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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00298#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00298#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00298#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00298#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00298#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00298#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:121897 up:source unirule:MF_00298 . _:121898 up:source unirule:MF_00298 . _:121899 up:source unirule:MF_00298 . _:121900 up:source unirule:MF_00298 . _:121901 up:source unirule:MF_00298 . _:121902 up:source unirule:MF_00298 . _:121903 up:source unirule:MF_00298 . _:121904 up:source unirule:MF_00298 . _:121905 up:source unirule:MF_00298 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0016818 , keyword:378 ; up:recommendedName ?name0 . ?name0 up:ecName '3.6.1.-' ; up:fullName 'RNA pyrophosphohydrolase' ; rdf:type up:Structured_Name . ?name1 up:fullName '(Di)nucleoside polyphosphate hydrolase' ; rdf:type up:Structured_Name . ?gene2 skos:altLabel 'nudH' ; skos:prefLabel 'rppH' . ?annotation3 a up:Function_Annotation ; rdfs:comment "Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage." . ?annotation4 up:cofactor chebi:60240 ; rdf:type up:Cofactor_Annotation . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Nudix hydrolase family. RppH subfamily.' . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Nudix box' . ?pfsb8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . _:121906 a rdf:Statement ; up:attribution _:121897 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:121907 a rdf:Statement ; up:attribution _:121898 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:121908 a rdf:Statement ; up:attribution _:121899 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:121909 a rdf:Statement ; up:attribution _:121900 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:121910 a rdf:Statement ; up:attribution _:121901 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:121911 a rdf:Statement ; up:attribution _:121902 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:121912 a rdf:Statement ; up:attribution _:121903 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:121913 a rdf:Statement ; up:attribution _:121904 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016818 . _:121914 a rdf:Statement ; up:source unirule:MF_00298 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:121915 a rdf:Statement ; up:attribution _:121905 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00298 #Rule MF_00298 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-18 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00298 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00298a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00298a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00298a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00298a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00298a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch16 faldo:location ?templateMotifSequenceMatchRegionP0A77617 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A77619 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A776MF_0029812 . ?templateMotifSequenceMatchRegionP0A77617 faldo:begin ?templateMotifSequenceMatchBeginP0A77618 . ?templateMotifSequenceMatchBeginP0A77618 faldo:position ?templateMotifSequenceMatchBeginPositionP0A77613 ; faldo:reference isoform:P0A776-1 . ?templateMotifSequenceProfileAlignmentOperationP0A77619 edam:has_input signature:MF_00298 ; rdf:type edam:operation_0300 . ?targetMotifMatch20 faldo:location ?targetMotifMatchRegionMatch21 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0029823 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A776MF_0029814 . ?targetMotifMatchRegionMatch21 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0029822 . ?targetMotifMatchRegionMatchBeginMF_0029822 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0029815 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0029823 edam:has_input signature:MF_00298 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A776MF_0029812, 1, (STRLEN(?templateMotifCigarP0A776MF_0029812) - STRLEN(REPLACE(?templateMotifCigarP0A776MF_0029812, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP0A77613) + 1)), '}'), '')))), '[a-z]', '')) AS ?step124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A776MF_0029814, 1, (STRLEN(?targetMotifMatchCigarP0A776MF_0029814) - STRLEN(REPLACE(?targetMotifMatchCigarP0A776MF_0029814, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A776MF_0029814, 1, (STRLEN(?targetMotifMatchCigarP0A776MF_0029814) - STRLEN(REPLACE(?targetMotifMatchCigarP0A776MF_0029814, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step124), '}'), '')))), '[^-]', ''))) AS ?step225) . BIND(((?step225 + ?targetMotifMatchRegionMatchBeginPositionMF_0029815) - 1) AS ?thisPositionOn10) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A776MF_0029812, 1, (STRLEN(?templateMotifCigarP0A776MF_0029812) - STRLEN(REPLACE(?templateMotifCigarP0A776MF_0029812, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP0A77613) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A776MF_0029814, 1, (STRLEN(?targetMotifMatchCigarP0A776MF_0029814) - STRLEN(REPLACE(?targetMotifMatchCigarP0A776MF_0029814, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A776MF_0029814, 1, (STRLEN(?targetMotifMatchCigarP0A776MF_0029814) - STRLEN(REPLACE(?targetMotifMatchCigarP0A776MF_0029814, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) . BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0029815) - 1) AS ?thisPositionOn11) . BIND(?this AS ?pfs1t28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) . FILTER ((BOUND(?thisPositionOn10) && BOUND(?thisPositionOn11))) . BIND(URI(CONCAT(STR(?this), '#MF_00298a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_00298 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00298#construct |