| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-27 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-29 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-23 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-26 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-25 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-24 |
| http://purl.uniprot.org/unirules/MF_00390#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00390#construct-template-63 |
| http://purl.uniprot.org/unirules/MF_00390#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00390#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00390#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00390#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00390#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00390#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:153648 up:source unirule:MF_00390 .
_:153649 up:source unirule:MF_00390 .
_:153650 up:source unirule:MF_00390 .
_:153651 up:source unirule:MF_00390 .
_:153652 up:source unirule:MF_00390 .
_:153653 up:source unirule:MF_00390 .
_:153654 up:source unirule:MF_00390 .
_:153655 up:source unirule:MF_00390 .
_:153656 up:source unirule:MF_00390 .
_:153657 up:source unirule:MF_00390 .
_:153658 up:source unirule:MF_00390 .
_:153659 up:source unirule:MF_00390 .
_:153660 up:source unirule:MF_00390 .
_:153661 up:source unirule:MF_00390 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005737 ,
GO:0008033 ,
GO:0016783 ,
keyword:808 ,
keyword:819 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.8.1.-' ;
up:fullName 'Sulfurtransferase TusD' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'tRNA 2-thiouridine synthesizing protein D' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'tusD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Heterohexamer, formed by a dimer of trimers. The hexameric TusBCD complex contains 2 copies each of TusB, TusC and TusD. The TusBCD complex interacts with TusE.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DsrE/TusD family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Cysteine persulfide intermediate' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
_:153662 a rdf:Statement ;
up:attribution _:153648 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:153663 a rdf:Statement ;
up:attribution _:153649 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:153664 a rdf:Statement ;
up:attribution _:153650 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:153665 a rdf:Statement ;
up:attribution _:153651 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:153666 a rdf:Statement ;
up:attribution _:153652 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:153667 a rdf:Statement ;
up:attribution _:153653 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:153668 a rdf:Statement ;
up:attribution _:153654 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:153669 a rdf:Statement ;
up:attribution _:153655 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:153670 a rdf:Statement ;
up:attribution _:153656 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:153671 a rdf:Statement ;
up:attribution _:153657 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:153672 a rdf:Statement ;
up:attribution _:153658 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016783 .
_:153673 a rdf:Statement ;
up:attribution _:153659 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008033 .
_:153674 a rdf:Statement ;
up:attribution _:153660 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:153675 a rdf:Statement ;
up:source unirule:MF_00390 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:153676 a rdf:Statement ;
up:attribution _:153661 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00390
#Rule MF_00390 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00390 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_00390a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00390a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00390a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00390a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00390a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00390a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP4553219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4553221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45532MF_0039014 .
?templateMotifSequenceMatchRegionP4553219 faldo:begin ?templateMotifSequenceMatchBeginP4553220 .
?templateMotifSequenceMatchBeginP4553220 faldo:position ?templateMotifSequenceMatchBeginPositionP4553215 ;
faldo:reference isoform:P45532-1 .
?templateMotifSequenceProfileAlignmentOperationP4553221 edam:has_input signature:MF_00390 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0039025 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45532MF_0039016 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0039024 .
?targetMotifMatchRegionMatchBeginMF_0039024 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0039017 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0039025 edam:has_input signature:MF_00390 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45532MF_0039014, 1, (STRLEN(?templateMotifCigarP45532MF_0039014) - STRLEN(REPLACE(?templateMotifCigarP45532MF_0039014, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP4553215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45532MF_0039016, 1, (STRLEN(?targetMotifMatchCigarP45532MF_0039016) - STRLEN(REPLACE(?targetMotifMatchCigarP45532MF_0039016, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45532MF_0039016, 1, (STRLEN(?targetMotifMatchCigarP45532MF_0039016) - STRLEN(REPLACE(?targetMotifMatchCigarP45532MF_0039016, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0039017) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00390a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00390 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00390#construct |
