Home | Contact

Results

RDF/XMLNTriplesTurtleShow queryShare ◀
SubjectPredicateObject
http://purl.uniprot.org/unirules/MF_00656#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_00656#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00656#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:249619 up:source unirule:MF_00656 . _:249620 up:source unirule:MF_00656 . _:249621 up:source unirule:MF_00656 . _:249622 up:source unirule:MF_00656 . _:249623 up:source unirule:MF_00656 . _:249624 up:source unirule:MF_00656 . _:249625 up:source unirule:MF_00656 . _:249626 up:source unirule:MF_00656 . _:249627 up:source unirule:MF_00656 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0018189 , keyword:884 ; up:recommendedName ?name0 . ?name0 up:fullName 'Coenzyme PQQ synthesis protein A' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Pyrroloquinoline quinone biosynthesis protein A' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'pqqA' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis. PQQ is probably formed by cross-linking a specific glutamate to a specific tyrosine residue and excising these residues from the peptide.' . ?annotation4 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; pyrroloquinoline quinone biosynthesis.' . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the PqqA family.' . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; rdf:type up:Cross-link_Annotation ; rdfs:comment 'Pyrroloquinoline quinone (Glu-Tyr)' . ?pfsb8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . _:249628 a rdf:Statement ; up:attribution _:249619 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:249629 a rdf:Statement ; up:attribution _:249620 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:249630 a rdf:Statement ; up:attribution _:249621 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:249631 a rdf:Statement ; up:attribution _:249622 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:249632 a rdf:Statement ; up:attribution _:249623 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:249633 a rdf:Statement ; up:attribution _:249624 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:249634 a rdf:Statement ; up:attribution _:249625 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:884 . _:249635 a rdf:Statement ; up:attribution _:249626 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0018189 . _:249636 a rdf:Statement ; up:source unirule:MF_00656 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:249637 a rdf:Statement ; up:attribution _:249627 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00656 #Rule MF_00656 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00656 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00656a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00656a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00656a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00656a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00656a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch16 faldo:location ?templateMotifSequenceMatchRegionP2753217 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2753219 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP27532MF_0065612 . ?templateMotifSequenceMatchRegionP2753217 faldo:begin ?templateMotifSequenceMatchBeginP2753218 . ?templateMotifSequenceMatchBeginP2753218 faldo:position ?templateMotifSequenceMatchBeginPositionP2753213 ; faldo:reference isoform:P27532-1 . ?templateMotifSequenceProfileAlignmentOperationP2753219 edam:has_input signature:MF_00656 ; rdf:type edam:operation_0300 . ?targetMotifMatch20 faldo:location ?targetMotifMatchRegionMatch21 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0065623 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP27532MF_0065614 . ?targetMotifMatchRegionMatch21 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0065622 . ?targetMotifMatchRegionMatchBeginMF_0065622 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0065615 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0065623 edam:has_input signature:MF_00656 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27532MF_0065612, 1, (STRLEN(?templateMotifCigarP27532MF_0065612) - STRLEN(REPLACE(?templateMotifCigarP27532MF_0065612, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP2753213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27532MF_0065614, 1, (STRLEN(?targetMotifMatchCigarP27532MF_0065614) - STRLEN(REPLACE(?targetMotifMatchCigarP27532MF_0065614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27532MF_0065614, 1, (STRLEN(?targetMotifMatchCigarP27532MF_0065614) - STRLEN(REPLACE(?targetMotifMatchCigarP27532MF_0065614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step124), '}'), '')))), '[^-]', ''))) AS ?step225) . BIND(((?step225 + ?targetMotifMatchRegionMatchBeginPositionMF_0065615) - 1) AS ?thisPositionOn10) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27532MF_0065612, 1, (STRLEN(?templateMotifCigarP27532MF_0065612) - STRLEN(REPLACE(?templateMotifCigarP27532MF_0065612, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionP2753213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27532MF_0065614, 1, (STRLEN(?targetMotifMatchCigarP27532MF_0065614) - STRLEN(REPLACE(?targetMotifMatchCigarP27532MF_0065614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27532MF_0065614, 1, (STRLEN(?targetMotifMatchCigarP27532MF_0065614) - STRLEN(REPLACE(?targetMotifMatchCigarP27532MF_0065614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) . BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0065615) - 1) AS ?thisPositionOn11) . BIND(?this AS ?pfs1t28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) . FILTER (REGEX('E[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]Y', SUBSTR(?thisSequenceValue, ?thisPositionOn10, (?thisPositionOn11 - ?thisPositionOn10)))) . BIND(URI(CONCAT(STR(?this), '#MF_00656a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_00656http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00656#construct
◀