| http://purl.uniprot.org/unirules/MF_00670#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:254189 up:source unirule:MF_00670 .
_:254190 up:source unirule:MF_00670 .
_:254191 up:source unirule:MF_00670 .
_:254192 up:source unirule:MF_00670 .
_:254193 up:source unirule:MF_00670 .
_:254194 up:source unirule:MF_00670 .
_:254195 up:source unirule:MF_00670 .
_:254196 up:source unirule:MF_00670 .
_:254197 up:source unirule:MF_00670 .
_:254198 up:source unirule:MF_00670 .
_:254199 up:source unirule:MF_00670 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0009026 ,
keyword:520 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.58' ;
up:fullName 'Altronate oxidoreductase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Tagaturonate dehydrogenase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Tagaturonate reductase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'uxaB' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate metabolism; pentose and glucuronate interconversion.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the mannitol dehydrogenase family. UxaB subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:57540 .
_:254200 a rdf:Statement ;
up:attribution _:254189 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:254201 a rdf:Statement ;
up:attribution _:254190 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:254202 a rdf:Statement ;
up:attribution _:254191 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:254203 a rdf:Statement ;
up:attribution _:254192 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:254204 a rdf:Statement ;
up:attribution _:254193 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:254205 a rdf:Statement ;
up:attribution _:254194 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:254206 a rdf:Statement ;
up:attribution _:254195 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:254207 a rdf:Statement ;
up:attribution _:254196 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:254208 a rdf:Statement ;
up:attribution _:254197 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:254209 a rdf:Statement ;
up:attribution _:254198 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009026 .
_:254210 a rdf:Statement ;
up:source unirule:MF_00670 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:254211 a rdf:Statement ;
up:attribution _:254199 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00670
#Rule MF_00670 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00670 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00670a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00670a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00670a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00670a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00670a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00670a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP0A6L720 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6L722 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6L7MF_0067015 .
?templateMotifSequenceMatchRegionP0A6L720 faldo:begin ?templateMotifSequenceMatchBeginP0A6L721 .
?templateMotifSequenceMatchBeginP0A6L721 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6L716 ;
faldo:reference isoform:P0A6L7-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6L722 edam:has_input signature:MF_00670 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0067026 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6L7MF_0067017 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0067025 .
?targetMotifMatchRegionMatchBeginMF_0067025 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0067018 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0067026 edam:has_input signature:MF_00670 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6L7MF_0067015, 1, (STRLEN(?templateMotifCigarP0A6L7MF_0067015) - STRLEN(REPLACE(?templateMotifCigarP0A6L7MF_0067015, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP0A6L716) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6L7MF_0067017, 1, (STRLEN(?targetMotifMatchCigarP0A6L7MF_0067017) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L7MF_0067017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6L7MF_0067017, 1, (STRLEN(?targetMotifMatchCigarP0A6L7MF_0067017) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L7MF_0067017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0067018) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6L7MF_0067015, 1, (STRLEN(?templateMotifCigarP0A6L7MF_0067015) - STRLEN(REPLACE(?templateMotifCigarP0A6L7MF_0067015, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP0A6L716) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6L7MF_0067017, 1, (STRLEN(?targetMotifMatchCigarP0A6L7MF_0067017) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L7MF_0067017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6L7MF_0067017, 1, (STRLEN(?targetMotifMatchCigarP0A6L7MF_0067017) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L7MF_0067017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0067018) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[LIV]{2)QFGEGNFLR[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00670a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
}
"xsd:string |
