| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-10 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-38 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-4 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-14 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-23 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-64 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-12 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-33 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_00733#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00733#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_00733#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00733#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00733#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00733#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00733#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00733#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:269095 up:source unirule:MF_00733 .
_:269096 up:source unirule:MF_00733 .
_:269097 up:source unirule:MF_00733 .
_:269098 up:source unirule:MF_00733 .
_:269099 up:source unirule:MF_00733 .
_:269100 up:source unirule:MF_00733 .
_:269101 up:source unirule:MF_00733 .
_:269102 up:source unirule:MF_00733 .
_:269103 up:source unirule:MF_00733 .
_:269104 up:source unirule:MF_00733 .
_:269105 up:source unirule:MF_00733 .
_:269106 up:source unirule:MF_00733 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0003842 ,
GO:0006537 ,
keyword:520 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.2.1.88' ;
up:fullName '1-pyrroline-5-carboxylate dehydrogenase' ;
up:shortName 'P5C dehydrogenase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'L-glutamate gamma-semialdehyde dehydrogenase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rocA' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-proline degradation into L-glutamate; L-glutamate from L-proline: step 2/2.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aldehyde dehydrogenase family. RocA subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
_:269107 a rdf:Statement ;
up:attribution _:269095 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:269108 a rdf:Statement ;
up:attribution _:269096 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:269109 a rdf:Statement ;
up:attribution _:269097 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:269110 a rdf:Statement ;
up:attribution _:269098 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:269111 a rdf:Statement ;
up:attribution _:269099 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:269112 a rdf:Statement ;
up:attribution _:269100 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:269113 a rdf:Statement ;
up:attribution _:269101 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:269114 a rdf:Statement ;
up:attribution _:269102 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:269115 a rdf:Statement ;
up:attribution _:269103 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003842 .
_:269116 a rdf:Statement ;
up:attribution _:269104 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006537 .
_:269117 a rdf:Statement ;
up:source unirule:MF_00733 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:269118 a rdf:Statement ;
up:attribution _:269105 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:269119 a rdf:Statement ;
up:source unirule:MF_00733 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:269120 a rdf:Statement ;
up:attribution _:269106 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00733
#Rule MF_00733 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-09-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00733 .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(URI(CONCAT(STR(?this), '#MF_00733a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00733a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00733a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00733a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00733a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch23 faldo:location ?templateMotifSequenceMatchRegionP3963424 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3963426 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39634MF_0073319 .
?templateMotifSequenceMatchRegionP3963424 faldo:begin ?templateMotifSequenceMatchBeginP3963425 .
?templateMotifSequenceMatchBeginP3963425 faldo:position ?templateMotifSequenceMatchBeginPositionP3963420 ;
faldo:reference isoform:P39634-1 .
?templateMotifSequenceProfileAlignmentOperationP3963426 edam:has_input signature:MF_00733 ;
rdf:type edam:operation_0300 .
?targetMotifMatch27 faldo:location ?targetMotifMatchRegionMatch28 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0073330 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39634MF_0073321 .
?targetMotifMatchRegionMatch28 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0073329 .
?targetMotifMatchRegionMatchBeginMF_0073329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0073322 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0073330 edam:has_input signature:MF_00733 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39634MF_0073319, 1, (STRLEN(?templateMotifCigarP39634MF_0073319) - STRLEN(REPLACE(?templateMotifCigarP39634MF_0073319, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP3963420) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39634MF_0073321, 1, (STRLEN(?targetMotifMatchCigarP39634MF_0073321) - STRLEN(REPLACE(?targetMotifMatchCigarP39634MF_0073321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39634MF_0073321, 1, (STRLEN(?targetMotifMatchCigarP39634MF_0073321) - STRLEN(REPLACE(?targetMotifMatchCigarP39634MF_0073321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0073322) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00733a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch38 faldo:location ?templateMotifSequenceMatchRegionP3963439 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3963441 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39634MF_0073334 .
?templateMotifSequenceMatchRegionP3963439 faldo:begin ?templateMotifSequenceMatchBeginP3963440 .
?templateMotifSequenceMatchBeginP3963440 faldo:position ?templateMotifSequenceMatchBeginPositionP3963435 ;
faldo:reference isoform:P39634-1 .
?templateMotifSequenceProfileAlignmentOperationP3963441 edam:has_input signature:MF_00733 ;
rdf:type edam:operation_0300 .
?targetMotifMatch42 faldo:location ?targetMotifMatchRegionMatch43 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0073345 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39634MF_0073336 .
?targetMotifMatchRegionMatch43 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0073344 .
?targetMotifMatchRegionMatchBeginMF_0073344 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0073337 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0073345 edam:has_input signature:MF_00733 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39634MF_0073334, 1, (STRLEN(?templateMotifCigarP39634MF_0073334) - STRLEN(REPLACE(?templateMotifCigarP39634MF_0073334, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionP3963435) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39634MF_0073336, 1, (STRLEN(?targetMotifMatchCigarP39634MF_0073336) - STRLEN(REPLACE(?targetMotifMatchCigarP39634MF_0073336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39634MF_0073336, 1, (STRLEN(?targetMotifMatchCigarP39634MF_0073336) - STRLEN(REPLACE(?targetMotifMatchCigarP39634MF_0073336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) .
BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0073337) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00733a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00733 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00733#construct |
