| http://purl.uniprot.org/unirules/MF_00868#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:309869 up:source unirule:MF_00868 .
_:309870 up:source unirule:MF_00868 .
_:309871 up:source unirule:MF_00868 .
_:309872 up:source unirule:MF_00868 .
_:309873 up:source unirule:MF_00868 .
_:309874 up:source unirule:MF_00868 .
_:309875 up:source unirule:MF_00868 .
_:309876 up:source unirule:MF_00868 .
_:309877 up:source unirule:MF_00868 .
_:309878 up:source unirule:MF_00868 .
_:309879 up:source unirule:MF_00868 .
?this up:annotation ?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0005737 ,
GO:0019450 ,
GO:0030170 ,
keyword:456 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.4.1.1' ;
up:fullName 'L-cysteine desulfhydrase Cds1' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'cds1' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the cysteine synthase/cystathionine beta-synthase family. Cds1 subfamily.' .
?case5 up:classifiedWith keyword:663 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
_:309880 a rdf:Statement ;
up:attribution _:309869 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:309881 a rdf:Statement ;
up:attribution _:309870 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:309882 a rdf:Statement ;
up:attribution _:309871 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:309883 a rdf:Statement ;
up:attribution _:309872 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:309884 a rdf:Statement ;
up:attribution _:309873 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:309885 a rdf:Statement ;
up:attribution _:309874 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:309886 a rdf:Statement ;
up:attribution _:309875 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:309887 a rdf:Statement ;
up:attribution _:309876 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030170 .
_:309888 a rdf:Statement ;
up:attribution _:309877 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019450 .
_:309889 a rdf:Statement ;
up:attribution _:309878 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:309890 a rdf:Statement ;
up:source unirule:MF_00868 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:309891 a rdf:Statement ;
up:attribution _:309879 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00868
#Rule MF_00868 Created by:? on:2022-06-10 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00868 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00868a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00868a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00868a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionO6965219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6965221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO69652MF_0086814 .
?templateMotifSequenceMatchRegionO6965219 faldo:begin ?templateMotifSequenceMatchBeginO6965220 .
?templateMotifSequenceMatchBeginO6965220 faldo:position ?templateMotifSequenceMatchBeginPositionO6965215 ;
faldo:reference isoform:O69652-1 .
?templateMotifSequenceProfileAlignmentOperationO6965221 edam:has_input signature:MF_00868 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0086825 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO69652MF_0086816 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0086824 .
?targetMotifMatchRegionMatchBeginMF_0086824 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0086817 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0086825 edam:has_input signature:MF_00868 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO69652MF_0086814, 1, (STRLEN(?templateMotifCigarO69652MF_0086814) - STRLEN(REPLACE(?templateMotifCigarO69652MF_0086814, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionO6965215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO69652MF_0086816, 1, (STRLEN(?targetMotifMatchCigarO69652MF_0086816) - STRLEN(REPLACE(?targetMotifMatchCigarO69652MF_0086816, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO69652MF_0086816, 1, (STRLEN(?targetMotifMatchCigarO69652MF_0086816) - STRLEN(REPLACE(?targetMotifMatchCigarO69652MF_0086816, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0086817) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00868a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag29) .
}
BIND(IF(BOUND(?tagFT_1), ?caseWithTag29, ?UNBOUND_VARIABLE) AS ?case5) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:201174 .
})) .
BIND(?this AS ?case7) .
}
}
"xsd:string |
