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http://purl.uniprot.org/unirules/MF_00958#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_00958#construct-where-list-0
http://purl.uniprot.org/unirules/MF_00958#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_00958#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00958#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:333382 up:source unirule:MF_00958 . _:333383 up:source unirule:MF_00958 . _:333384 up:source unirule:MF_00958 . _:333385 up:source unirule:MF_00958 . _:333386 up:source unirule:MF_00958 . _:333387 up:source unirule:MF_00958 . _:333388 up:source unirule:MF_00958 . _:333389 up:source unirule:MF_00958 . _:333390 up:source unirule:MF_00958 . _:333391 up:source unirule:MF_00958 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation4 ; up:classifiedWith GO:0010468 , GO:0045862 , keyword:346 ; up:recommendedName ?name0 . ?name0 up:fullName 'Regulator of RpoS' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'rssB' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co-degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation.' . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'Binds to RpoS.' . ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the RssB family.' . ?case5 up:classifiedWith keyword:597 . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment '4-aspartylphosphate' . ?pfsb8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . _:333392 a rdf:Statement ; up:attribution _:333382 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:333393 a rdf:Statement ; up:attribution _:333383 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:333394 a rdf:Statement ; up:attribution _:333384 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:333395 a rdf:Statement ; up:attribution _:333385 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:333396 a rdf:Statement ; up:attribution _:333386 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:333397 a rdf:Statement ; up:attribution _:333387 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:346 . _:333398 a rdf:Statement ; up:attribution _:333388 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0045862 . _:333399 a rdf:Statement ; up:attribution _:333389 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0010468 . _:333400 a rdf:Statement ; up:attribution _:333390 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:333401 a rdf:Statement ; up:source unirule:MF_00958 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:333402 a rdf:Statement ; up:attribution _:333391 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00958 #Rule MF_00958 Created by:? on:2013-04-26 Modified by:Edouard de Castro on:2019-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00958 . ?thisOrganism rdfs:subClassOf+ taxon:91347 . BIND(URI(CONCAT(STR(?this), '#MF_00958a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00958a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00958a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00958a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch16 faldo:location ?templateMotifSequenceMatchRegionP0AEV117 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEV119 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEV1MF_0095812 . ?templateMotifSequenceMatchRegionP0AEV117 faldo:begin ?templateMotifSequenceMatchBeginP0AEV118 . ?templateMotifSequenceMatchBeginP0AEV118 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEV113 ; faldo:reference isoform:P0AEV1-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEV119 edam:has_input signature:MF_00958 ; rdf:type edam:operation_0300 . ?targetMotifMatch20 faldo:location ?targetMotifMatchRegionMatch21 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0095823 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEV1MF_0095814 . ?targetMotifMatchRegionMatch21 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0095822 . ?targetMotifMatchRegionMatchBeginMF_0095822 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0095815 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0095823 edam:has_input signature:MF_00958 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagphospho) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEV1MF_0095812, 1, (STRLEN(?templateMotifCigarP0AEV1MF_0095812) - STRLEN(REPLACE(?templateMotifCigarP0AEV1MF_0095812, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP0AEV113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEV1MF_0095814, 1, (STRLEN(?targetMotifMatchCigarP0AEV1MF_0095814) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEV1MF_0095814, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEV1MF_0095814, 1, (STRLEN(?targetMotifMatchCigarP0AEV1MF_0095814) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEV1MF_0095814, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step124), '}'), '')))), '[^-]', ''))) AS ?step225) . BIND(((?step225 + ?targetMotifMatchRegionMatchBeginPositionMF_0095815) - 1) AS ?thisPositionOn10) . BIND(?thisPositionOn10 AS ?thisPositionOn11) . BIND(?this AS ?pfs1t26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00958a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag27) . } BIND(IF(BOUND(?tagphospho), ?caseWithTag27, ?UNBOUND_VARIABLE) AS ?case5) . } "xsd:string
http://purl.uniprot.org/unirules/MF_00958http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00958#construct
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