| http://purl.uniprot.org/unirules/MF_00976#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:340063 up:source unirule:MF_00976 .
_:340064 up:source unirule:MF_00976 .
_:340065 up:source unirule:MF_00976 .
_:340066 up:source unirule:MF_00976 .
_:340067 up:source unirule:MF_00976 .
_:340068 up:source unirule:MF_00976 .
_:340069 up:source unirule:MF_00976 .
_:340070 up:source unirule:MF_00976 .
_:340071 up:source unirule:MF_00976 .
_:340072 up:source unirule:MF_00976 .
_:340073 up:source unirule:MF_00976 .
_:340074 up:source unirule:MF_00976 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0007165 ,
GO:0031241 ,
keyword:472 ,
keyword:998 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Outer membrane lipoprotein RcsF' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'rcsF' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RcsF family.' .
?case6 up:classifiedWith keyword:1015 .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
_:340075 a rdf:Statement ;
up:attribution _:340063 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:340076 a rdf:Statement ;
up:attribution _:340064 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:340077 a rdf:Statement ;
up:attribution _:340065 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:340078 a rdf:Statement ;
up:attribution _:340066 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:340079 a rdf:Statement ;
up:attribution _:340067 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:340080 a rdf:Statement ;
up:attribution _:340068 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:998 .
_:340081 a rdf:Statement ;
up:attribution _:340069 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:340082 a rdf:Statement ;
up:attribution _:340070 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007165 .
_:340083 a rdf:Statement ;
up:attribution _:340071 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031241 .
_:340084 a rdf:Statement ;
up:attribution _:340072 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:340085 a rdf:Statement ;
up:source unirule:MF_00976 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:340086 a rdf:Statement ;
up:attribution _:340073 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:340087 a rdf:Statement ;
up:source unirule:MF_00976 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:340088 a rdf:Statement ;
up:attribution _:340074 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00976
#Rule MF_00976 Created by:? on:2013-11-14 Modified by:Catherine Rivoire on:2022-09-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00976 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_00976a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00976a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00976a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00976a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch23 faldo:location ?templateMotifSequenceMatchRegionP6941124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6941126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69411MF_0097619 .
?templateMotifSequenceMatchRegionP6941124 faldo:begin ?templateMotifSequenceMatchBeginP6941125 .
?templateMotifSequenceMatchBeginP6941125 faldo:position ?templateMotifSequenceMatchBeginPositionP6941120 ;
faldo:reference isoform:P69411-1 .
?templateMotifSequenceProfileAlignmentOperationP6941126 edam:has_input signature:MF_00976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch27 faldo:location ?targetMotifMatchRegionMatch28 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0097630 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69411MF_0097621 .
?targetMotifMatchRegionMatch28 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0097629 .
?targetMotifMatchRegionMatchBeginMF_0097629 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0097622 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0097630 edam:has_input signature:MF_00976 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulf) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69411MF_0097619, 1, (STRLEN(?templateMotifCigarP69411MF_0097619) - STRLEN(REPLACE(?templateMotifCigarP69411MF_0097619, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP6941120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69411MF_0097621, 1, (STRLEN(?targetMotifMatchCigarP69411MF_0097621) - STRLEN(REPLACE(?targetMotifMatchCigarP69411MF_0097621, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69411MF_0097621, 1, (STRLEN(?targetMotifMatchCigarP69411MF_0097621) - STRLEN(REPLACE(?targetMotifMatchCigarP69411MF_0097621, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0097622) - 1) AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69411MF_0097619, 1, (STRLEN(?templateMotifCigarP69411MF_0097619) - STRLEN(REPLACE(?templateMotifCigarP69411MF_0097619, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP6941120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69411MF_0097621, 1, (STRLEN(?targetMotifMatchCigarP69411MF_0097621) - STRLEN(REPLACE(?targetMotifMatchCigarP69411MF_0097621, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69411MF_0097621, 1, (STRLEN(?targetMotifMatchCigarP69411MF_0097621) - STRLEN(REPLACE(?targetMotifMatchCigarP69411MF_0097621, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), '')))), '[^-]', ''))) AS ?step234) .
BIND(((?step234 + ?targetMotifMatchRegionMatchBeginPositionMF_0097622) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00976a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionP6941141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6941143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69411MF_0097636 .
?templateMotifSequenceMatchRegionP6941141 faldo:begin ?templateMotifSequenceMatchBeginP6941142 .
?templateMotifSequenceMatchBeginP6941142 faldo:position ?templateMotifSequenceMatchBeginPositionP6941137 ;
faldo:reference isoform:P69411-1 .
?templateMotifSequenceProfileAlignmentOperationP6941143 edam:has_input signature:MF_00976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0097647 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69411MF_0097638 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0097646 .
?targetMotifMatchRegionMatchBeginMF_0097646 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0097639 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0097647 edam:has_input signature:MF_00976 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulf) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69411MF_0097636, 1, (STRLEN(?templateMotifCigarP69411MF_0097636) - STRLEN(REPLACE(?templateMotifCigarP69411MF_0097636, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP6941137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69411MF_0097638, 1, (STRLEN(?targetMotifMatchCigarP69411MF_0097638) - STRLEN(REPLACE(?targetMotifMatchCigarP69411MF_0097638, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69411MF_0097638, 1, (STRLEN(?targetMotifMatchCigarP69411MF_0097638) - STRLEN(REPLACE(?targetMotifMatchCigarP69411MF_0097638, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0097639) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69411MF_0097636, 1, (STRLEN(?templateMotifCigarP69411MF_0097636) - STRLEN(REPLACE(?templateMotifCigarP69411MF_0097636, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP6941137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69411MF_0097638, 1, (STRLEN(?targetMotifMatchCigarP69411MF_0097638) - STRLEN(REPLACE(?targetMotifMatchCigarP69411MF_0097638, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69411MF_0097638, 1, (STRLEN(?targetMotifMatchCigarP69411MF_0097638) - STRLEN(REPLACE(?targetMotifMatchCigarP69411MF_0097638, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0097639) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00976a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag53) .
}
BIND(IF(BOUND(?tagdisulf), ?caseWithTag53, ?UNBOUND_VARIABLE) AS ?case6) .
}
"xsd:string |
