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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-11 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-5 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-36 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-19 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-15 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-30 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-51 |
| http://purl.uniprot.org/unirules/MF_00977#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00977#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_00977#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00977#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00977#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00977#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00977#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00977#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:340301 up:source unirule:MF_00977 . _:340302 up:source unirule:MF_00977 . _:340303 up:source unirule:MF_00977 . _:340304 up:source unirule:MF_00977 . _:340305 up:source unirule:MF_00977 . _:340306 up:source unirule:MF_00977 . _:340307 up:source unirule:MF_00977 . _:340308 up:source unirule:MF_00977 . _:340309 up:source unirule:MF_00977 . _:340310 up:source unirule:MF_00977 . _:340311 up:source unirule:MF_00977 . _:340312 up:source unirule:MF_00977 . ?this up:annotation ?annotation1 , ?annotation2 ; up:classifiedWith GO:0004532 , keyword:269 , keyword:378 , keyword:540 ; up:recommendedName ?name0 . ?name0 up:ecName '3.1.13.-' ; up:fullName "3'-5' exoribonuclease" ; rdf:type up:Structured_Name . ?annotation1 a up:Function_Annotation ; rdfs:comment "Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA." . ?annotation2 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?case3 up:classifiedWith GO:0000287 , keyword:460 , keyword:479 . ?pfs4 up:annotation ?annotation5 . ?annotation5 faldo:begin ?pfsb6 ; faldo:end ?pfse7 ; up:ligand ?ligand8 ; rdf:type up:Binding_Site_Annotation . ?pfsb6 faldo:position ?thisPositionOn9 ; rdf:type faldo:ExactPosition . ?pfse7 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?ligand8 rdfs:subClassOf chebi:18420 . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; rdf:type up:Region_Annotation ; rdfs:comment 'RNA binding' . ?pfsb13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . _:340313 a rdf:Statement ; up:attribution _:340301 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:340314 a rdf:Statement ; up:attribution _:340302 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:340315 a rdf:Statement ; up:attribution _:340303 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:340316 a rdf:Statement ; up:attribution _:340304 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:269 . _:340317 a rdf:Statement ; up:attribution _:340305 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:340318 a rdf:Statement ; up:attribution _:340306 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:340319 a rdf:Statement ; up:attribution _:340307 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004532 . _:340320 a rdf:Statement ; up:attribution _:340308 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:340321 a rdf:Statement ; up:attribution _:340309 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:340322 a rdf:Statement ; up:attribution _:340310 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:340323 a rdf:Statement ; up:source unirule:MF_00977 ; rdf:subject ?pfs4 ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:340324 a rdf:Statement ; up:attribution _:340311 ; rdf:subject ?pfs4 ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:340325 a rdf:Statement ; up:source unirule:MF_00977 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:340326 a rdf:Statement ; up:attribution _:340312 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00977 #Rule MF_00977 Created by:? on:2013-11-25 Modified by:Catherine Rivoire on:2023-03-27 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00977 . ?thisOrganism rdfs:subClassOf+ taxon:201174 . BIND(URI(CONCAT(STR(?this), '#MF_00977a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00977a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00977a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionP9WJ7322 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJ7324 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJ73MF_0097717 . ?templateMotifSequenceMatchRegionP9WJ7322 faldo:begin ?templateMotifSequenceMatchBeginP9WJ7323 . ?templateMotifSequenceMatchBeginP9WJ7323 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJ7318 ; faldo:reference isoform:P9WJ73-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJ7324 edam:has_input signature:MF_00977 ; rdf:type edam:operation_0300 . ?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0097728 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJ73MF_0097719 . ?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0097727 . ?targetMotifMatchRegionMatchBeginMF_0097727 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0097720 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0097728 edam:has_input signature:MF_00977 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagMg) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJ73MF_0097717, 1, (STRLEN(?templateMotifCigarP9WJ73MF_0097717) - STRLEN(REPLACE(?templateMotifCigarP9WJ73MF_0097717, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionP9WJ7318) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJ73MF_0097719, 1, (STRLEN(?targetMotifMatchCigarP9WJ73MF_0097719) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJ73MF_0097719, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJ73MF_0097719, 1, (STRLEN(?targetMotifMatchCigarP9WJ73MF_0097719) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJ73MF_0097719, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) . BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0097720) - 1) AS ?thisPositionOn9) . BIND(?thisPositionOn9 AS ?thisPositionOn10) . BIND(?this AS ?pfs1t31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn9))) AS ?pfsb6) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfse7) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn9, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00977a5')) AS ?annotation5) . BIND(?this AS ?pfs4) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch36 faldo:location ?templateMotifSequenceMatchRegionP9WJ7337 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJ7339 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJ73MF_0097732 . ?templateMotifSequenceMatchRegionP9WJ7337 faldo:begin ?templateMotifSequenceMatchBeginP9WJ7338 . ?templateMotifSequenceMatchBeginP9WJ7338 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJ7333 ; faldo:reference isoform:P9WJ73-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJ7339 edam:has_input signature:MF_00977 ; rdf:type edam:operation_0300 . ?targetMotifMatch40 faldo:location ?targetMotifMatchRegionMatch41 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0097743 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJ73MF_0097734 . ?targetMotifMatchRegionMatch41 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0097742 . ?targetMotifMatchRegionMatchBeginMF_0097742 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0097735 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0097743 edam:has_input signature:MF_00977 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJ73MF_0097732, 1, (STRLEN(?templateMotifCigarP9WJ73MF_0097732) - STRLEN(REPLACE(?templateMotifCigarP9WJ73MF_0097732, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionP9WJ7333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJ73MF_0097734, 1, (STRLEN(?targetMotifMatchCigarP9WJ73MF_0097734) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJ73MF_0097734, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJ73MF_0097734, 1, (STRLEN(?targetMotifMatchCigarP9WJ73MF_0097734) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJ73MF_0097734, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), '')))), '[^-]', ''))) AS ?step245) . BIND(((?step245 + ?targetMotifMatchRegionMatchBeginPositionMF_0097735) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJ73MF_0097732, 1, (STRLEN(?templateMotifCigarP9WJ73MF_0097732) - STRLEN(REPLACE(?templateMotifCigarP9WJ73MF_0097732, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP9WJ7333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJ73MF_0097734, 1, (STRLEN(?targetMotifMatchCigarP9WJ73MF_0097734) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJ73MF_0097734, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJ73MF_0097734, 1, (STRLEN(?targetMotifMatchCigarP9WJ73MF_0097734) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJ73MF_0097734, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) . BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0097735) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs2t48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) . FILTER (REGEX('D[TS]EF', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) . BIND(URI(CONCAT(STR(?this), '#MF_00977a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag49) . } BIND(IF(BOUND(?tagMg), ?caseWithTag49, ?UNBOUND_VARIABLE) AS ?case3) . } "xsd:string |
| http://purl.uniprot.org/unirules/MF_00977 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00977#construct |