| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-6 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-67 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-32 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-25 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-11 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-36 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-39 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-51 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_01030#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01030#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_01030#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01030#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01030#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01030#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01030#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01030#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:361049 up:source unirule:MF_01030 .
_:361050 up:source unirule:MF_01030 .
_:361051 up:source unirule:MF_01030 .
_:361052 up:source unirule:MF_01030 .
_:361053 up:source unirule:MF_01030 .
_:361054 up:source unirule:MF_01030 .
_:361055 up:source unirule:MF_01030 .
_:361056 up:source unirule:MF_01030 .
_:361057 up:source unirule:MF_01030 .
_:361058 up:source unirule:MF_01030 .
_:361059 up:source unirule:MF_01030 .
_:361060 up:source unirule:MF_01030 .
_:361061 up:source unirule:MF_01030 .
?this up:annotation ?annotation1 ,
?annotation3 ,
?annotation4 ;
up:classifiedWith GO:0016836 ,
GO:0046416 ,
keyword:456 ,
keyword:663 .
?gene0 skos:prefLabel 'dsdA' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the serine/threonine dehydratase family. DsdA subfamily.' .
?case5 up:alternativeName ?name7 ;
up:recommendedName ?name6 .
?name6 up:ecName '4.3.1.18' ;
up:fullName 'D-serine dehydratase' ;
rdf:type up:Structured_Name .
?name7 up:fullName 'D-serine deaminase' ;
up:shortName 'DSD' ;
rdf:type up:Structured_Name .
?case8 up:alternativeName ?name10 ;
up:recommendedName ?name9 .
?name9 up:ecName '4.3.1.18' ;
up:fullName 'Probable D-serine dehydratase' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'D-serine deaminase' ;
up:shortName 'DSD' ;
rdf:type up:Structured_Name .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
_:361062 a rdf:Statement ;
up:attribution _:361049 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:361063 a rdf:Statement ;
up:attribution _:361050 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:361064 a rdf:Statement ;
up:attribution _:361051 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:361065 a rdf:Statement ;
up:attribution _:361052 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:361066 a rdf:Statement ;
up:attribution _:361053 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:361067 a rdf:Statement ;
up:attribution _:361054 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:361068 a rdf:Statement ;
up:attribution _:361055 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016836 .
_:361069 a rdf:Statement ;
up:attribution _:361056 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046416 .
_:361070 a rdf:Statement ;
up:attribution _:361057 ;
rdf:subject ?case5 ;
rdf:predicate up:recommendedName ;
rdf:object ?name6 .
_:361071 a rdf:Statement ;
up:attribution _:361058 ;
rdf:subject ?case5 ;
rdf:predicate up:alternativeName ;
rdf:object ?name7 .
_:361072 a rdf:Statement ;
up:attribution _:361059 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:361073 a rdf:Statement ;
up:attribution _:361060 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:361074 a rdf:Statement ;
up:source unirule:MF_01030 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:361075 a rdf:Statement ;
up:attribution _:361061 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01030
#Rule MF_01030 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01030 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01030a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01030a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01030a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionP0092622 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0092624 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00926MF_0103017 .
?templateMotifSequenceMatchRegionP0092622 faldo:begin ?templateMotifSequenceMatchBeginP0092623 .
?templateMotifSequenceMatchBeginP0092623 faldo:position ?templateMotifSequenceMatchBeginPositionP0092618 ;
faldo:reference isoform:P00926-1 .
?templateMotifSequenceProfileAlignmentOperationP0092624 edam:has_input signature:MF_01030 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0103028 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00926MF_0103019 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0103027 .
?targetMotifMatchRegionMatchBeginMF_0103027 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0103020 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0103028 edam:has_input signature:MF_01030 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00926MF_0103017, 1, (STRLEN(?templateMotifCigarP00926MF_0103017) - STRLEN(REPLACE(?templateMotifCigarP00926MF_0103017, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP0092618) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00926MF_0103019, 1, (STRLEN(?targetMotifMatchCigarP00926MF_0103019) - STRLEN(REPLACE(?targetMotifMatchCigarP00926MF_0103019, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00926MF_0103019, 1, (STRLEN(?targetMotifMatchCigarP00926MF_0103019) - STRLEN(REPLACE(?targetMotifMatchCigarP00926MF_0103019, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0103020) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01030a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case5) .
BIND(URI(CONCAT(STR(?this), '#MF_01030a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_01030a7')) AS ?name7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:91347 .
})) .
BIND(?this AS ?case8) .
BIND(URI(CONCAT(STR(?this), '#MF_01030a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_01030a10')) AS ?name10) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01030 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01030#construct |
