| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-5 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-3 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-18 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-33 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-4 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-14 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-63 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-64 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-36 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-66 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-68 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-11 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_01051#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01051#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_01051#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01051#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01051#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01051#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01051#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01051#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:369309 up:source unirule:MF_01051 .
_:369310 up:source unirule:MF_01051 .
_:369311 up:source unirule:MF_01051 .
_:369312 up:source unirule:MF_01051 .
_:369313 up:source unirule:MF_01051 .
_:369314 up:source unirule:MF_01051 .
_:369315 up:source unirule:MF_01051 .
_:369316 up:source unirule:MF_01051 .
_:369317 up:source unirule:MF_01051 .
_:369318 up:source unirule:MF_01051 .
_:369319 up:source unirule:MF_01051 .
_:369320 up:source unirule:MF_01051 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0009437 ,
GO:0016836 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.149' ;
up:fullName 'Carnitinyl-CoA dehydratase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Crotonobetainyl-CoA hydratase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'caiD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine metabolism; carnitine metabolism.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the enoyl-CoA hydratase/isomerase family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
_:369321 a rdf:Statement ;
up:attribution _:369309 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:369322 a rdf:Statement ;
up:attribution _:369310 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:369323 a rdf:Statement ;
up:attribution _:369311 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:369324 a rdf:Statement ;
up:attribution _:369312 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:369325 a rdf:Statement ;
up:attribution _:369313 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:369326 a rdf:Statement ;
up:attribution _:369314 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:369327 a rdf:Statement ;
up:attribution _:369315 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:369328 a rdf:Statement ;
up:attribution _:369316 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:369329 a rdf:Statement ;
up:attribution _:369317 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016836 .
_:369330 a rdf:Statement ;
up:attribution _:369318 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009437 .
_:369331 a rdf:Statement ;
up:source unirule:MF_01051 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:369332 a rdf:Statement ;
up:attribution _:369319 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:369333 a rdf:Statement ;
up:source unirule:MF_01051 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:369334 a rdf:Statement ;
up:attribution _:369320 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01051
#Rule MF_01051 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-03-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01051 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01051a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01051a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01051a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01051a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01051a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01051a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP3155125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3155127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31551MF_0105120 .
?templateMotifSequenceMatchRegionP3155125 faldo:begin ?templateMotifSequenceMatchBeginP3155126 .
?templateMotifSequenceMatchBeginP3155126 faldo:position ?templateMotifSequenceMatchBeginPositionP3155121 ;
faldo:reference isoform:P31551-1 .
?templateMotifSequenceProfileAlignmentOperationP3155127 edam:has_input signature:MF_01051 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0105131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31551MF_0105122 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0105130 .
?targetMotifMatchRegionMatchBeginMF_0105130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0105123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0105131 edam:has_input signature:MF_01051 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31551MF_0105120, 1, (STRLEN(?templateMotifCigarP31551MF_0105120) - STRLEN(REPLACE(?templateMotifCigarP31551MF_0105120, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionP3155121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31551MF_0105122, 1, (STRLEN(?targetMotifMatchCigarP31551MF_0105122) - STRLEN(REPLACE(?targetMotifMatchCigarP31551MF_0105122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31551MF_0105122, 1, (STRLEN(?targetMotifMatchCigarP31551MF_0105122) - STRLEN(REPLACE(?targetMotifMatchCigarP31551MF_0105122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0105123) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01051a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP3155140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3155142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31551MF_0105135 .
?templateMotifSequenceMatchRegionP3155140 faldo:begin ?templateMotifSequenceMatchBeginP3155141 .
?templateMotifSequenceMatchBeginP3155141 faldo:position ?templateMotifSequenceMatchBeginPositionP3155136 ;
faldo:reference isoform:P31551-1 .
?templateMotifSequenceProfileAlignmentOperationP3155142 edam:has_input signature:MF_01051 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0105146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31551MF_0105137 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0105145 .
?targetMotifMatchRegionMatchBeginMF_0105145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0105138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0105146 edam:has_input signature:MF_01051 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31551MF_0105135, 1, (STRLEN(?templateMotifCigarP31551MF_0105135) - STRLEN(REPLACE(?templateMotifCigarP31551MF_0105135, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP3155136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31551MF_0105137, 1, (STRLEN(?targetMotifMatchCigarP31551MF_0105137) - STRLEN(REPLACE(?targetMotifMatchCigarP31551MF_0105137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31551MF_0105137, 1, (STRLEN(?targetMotifMatchCigarP31551MF_0105137) - STRLEN(REPLACE(?targetMotifMatchCigarP31551MF_0105137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0105138) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01051a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
}
"xsd:string |
