| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-26 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-64 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-8 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-45 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-6 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-63 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-52 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-4 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-21 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-2 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-27 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_01081#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01081#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_01081#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01081#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01081#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01081#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01081#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01081#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:376457 up:source unirule:MF_01081 .
_:376458 up:source unirule:MF_01081 .
_:376459 up:source unirule:MF_01081 .
_:376460 up:source unirule:MF_01081 .
_:376461 up:source unirule:MF_01081 .
_:376462 up:source unirule:MF_01081 .
_:376463 up:source unirule:MF_01081 .
_:376464 up:source unirule:MF_01081 .
_:376465 up:source unirule:MF_01081 .
_:376466 up:source unirule:MF_01081 .
_:376467 up:source unirule:MF_01081 .
_:376468 up:source unirule:MF_01081 .
_:376469 up:source unirule:MF_01081 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0009982 ,
GO:0031119 ,
keyword:413 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.4.99.25' ;
up:fullName 'Probable tRNA pseudouridine synthase B' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'tRNA pseudouridine(55) synthase' ;
up:shortName 'Psi55 synthase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA pseudouridylate synthase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'tRNA-uridine isomerase' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'truB' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
_:376470 a rdf:Statement ;
up:attribution _:376457 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:376471 a rdf:Statement ;
up:attribution _:376458 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:376472 a rdf:Statement ;
up:attribution _:376459 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:376473 a rdf:Statement ;
up:attribution _:376460 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:376474 a rdf:Statement ;
up:attribution _:376461 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:376475 a rdf:Statement ;
up:attribution _:376462 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:376476 a rdf:Statement ;
up:attribution _:376463 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:376477 a rdf:Statement ;
up:attribution _:376464 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:376478 a rdf:Statement ;
up:attribution _:376465 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:376479 a rdf:Statement ;
up:attribution _:376466 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:376480 a rdf:Statement ;
up:attribution _:376467 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009982 .
_:376481 a rdf:Statement ;
up:attribution _:376468 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031119 .
_:376482 a rdf:Statement ;
up:source unirule:MF_01081 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:376483 a rdf:Statement ;
up:attribution _:376469 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01081
#Rule MF_01081 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01081 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01081a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01081a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01081a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01081a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01081a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01081a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01081a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionO3000120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3000122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30001MF_0108115 .
?templateMotifSequenceMatchRegionO3000120 faldo:begin ?templateMotifSequenceMatchBeginO3000121 .
?templateMotifSequenceMatchBeginO3000121 faldo:position ?templateMotifSequenceMatchBeginPositionO3000116 ;
faldo:reference isoform:O30001-1 .
?templateMotifSequenceProfileAlignmentOperationO3000122 edam:has_input signature:MF_01081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0108126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30001MF_0108117 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0108125 .
?targetMotifMatchRegionMatchBeginMF_0108125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0108126 edam:has_input signature:MF_01081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30001MF_0108115, 1, (STRLEN(?templateMotifCigarO30001MF_0108115) - STRLEN(REPLACE(?templateMotifCigarO30001MF_0108115, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionO3000116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30001MF_0108117, 1, (STRLEN(?targetMotifMatchCigarO30001MF_0108117) - STRLEN(REPLACE(?targetMotifMatchCigarO30001MF_0108117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30001MF_0108117, 1, (STRLEN(?targetMotifMatchCigarO30001MF_0108117) - STRLEN(REPLACE(?targetMotifMatchCigarO30001MF_0108117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0108118) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01081a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01081 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01081#construct |
