| http://purl.uniprot.org/unirules/MF_01122#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01122#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_01122#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01122#construct-template-17 |
| http://purl.uniprot.org/unirules/MF_01122#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01122#construct-template-37 |
| http://purl.uniprot.org/unirules/MF_01122#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01122#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_01122#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01122#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_01122#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01122#construct-template-45 |
| http://purl.uniprot.org/unirules/MF_01122#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01122#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_01122#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01122#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_01122#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01122#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_01122#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01122#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01122#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01122#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01122#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01122#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:390477 up:source unirule:MF_01122 .
_:390478 up:source unirule:MF_01122 .
_:390479 up:source unirule:MF_01122 .
_:390480 up:source unirule:MF_01122 .
_:390481 up:source unirule:MF_01122 .
_:390482 up:source unirule:MF_01122 .
_:390483 up:source unirule:MF_01122 .
_:390484 up:source unirule:MF_01122 .
_:390485 up:source unirule:MF_01122 .
_:390486 up:source unirule:MF_01122 .
_:390487 up:source unirule:MF_01122 .
_:390488 up:source unirule:MF_01122 .
_:390489 up:source unirule:MF_01122 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation6 ;
up:classifiedWith GO:0003690 ,
GO:0005737 ,
keyword:158 ,
keyword:226 ,
keyword:238 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'DNA/RNA-binding protein Alba' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'albA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Binds double-stranded DNA tightly but without sequence specificity. Involved in DNA compaction.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation3li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the histone-like Alba family.' .
?case7 up:classifiedWith keyword:7 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
_:390490 a rdf:Statement ;
up:attribution _:390477 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:390491 a rdf:Statement ;
up:attribution _:390478 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:390492 a rdf:Statement ;
up:attribution _:390479 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:390493 a rdf:Statement ;
up:attribution _:390480 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:390494 a rdf:Statement ;
up:attribution _:390481 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:390495 a rdf:Statement ;
up:attribution _:390482 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:158 .
_:390496 a rdf:Statement ;
up:attribution _:390483 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:390497 a rdf:Statement ;
up:attribution _:390484 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:390498 a rdf:Statement ;
up:attribution _:390485 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:226 .
_:390499 a rdf:Statement ;
up:attribution _:390486 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003690 .
_:390500 a rdf:Statement ;
up:attribution _:390487 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:390501 a rdf:Statement ;
up:attribution _:390488 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:390502 a rdf:Statement ;
up:source unirule:MF_01122 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:390503 a rdf:Statement ;
up:attribution _:390489 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01122
#Rule MF_01122 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2023-11-15
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01122 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01122a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01122a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01122a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01122a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP6084919 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6084921 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60849MF_0112214 .
?templateMotifSequenceMatchRegionP6084919 faldo:begin ?templateMotifSequenceMatchBeginP6084920 .
?templateMotifSequenceMatchBeginP6084920 faldo:position ?templateMotifSequenceMatchBeginPositionP6084915 ;
faldo:reference isoform:P60849-1 .
?templateMotifSequenceProfileAlignmentOperationP6084921 edam:has_input signature:MF_01122 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0112225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60849MF_0112216 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0112224 .
?targetMotifMatchRegionMatchBeginMF_0112224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0112217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0112225 edam:has_input signature:MF_01122 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?taglys16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60849MF_0112214, 1, (STRLEN(?templateMotifCigarP60849MF_0112214) - STRLEN(REPLACE(?templateMotifCigarP60849MF_0112214, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP6084915) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60849MF_0112216, 1, (STRLEN(?targetMotifMatchCigarP60849MF_0112216) - STRLEN(REPLACE(?targetMotifMatchCigarP60849MF_0112216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60849MF_0112216, 1, (STRLEN(?targetMotifMatchCigarP60849MF_0112216) - STRLEN(REPLACE(?targetMotifMatchCigarP60849MF_0112216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0112217) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01122a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag29) .
}
BIND(IF(BOUND(?taglys16), ?caseWithTag29, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01122 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01122#construct |
