| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-9 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-0 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-23 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-2 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-31 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-4 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_01175#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01175#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_01175#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01175#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01175#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01175#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01175#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01175#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:411063 up:source unirule:MF_01175 .
_:411064 up:source unirule:MF_01175 .
_:411065 up:source unirule:MF_01175 .
_:411066 up:source unirule:MF_01175 .
_:411067 up:source unirule:MF_01175 .
_:411068 up:source unirule:MF_01175 .
_:411069 up:source unirule:MF_01175 .
_:411070 up:source unirule:MF_01175 .
_:411071 up:source unirule:MF_01175 .
_:411072 up:source unirule:MF_01175 .
_:411073 up:source unirule:MF_01175 .
_:411074 up:source unirule:MF_01175 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0005542 ,
GO:0005737 ,
GO:0008033 ,
keyword:290 ,
keyword:819 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'tRNA-modifying protein YgfZ' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Folate-binding protein involved in regulating the level of ATP-DnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication.' .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the tRNA-modifying YgfZ family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
up:ligand ?ligand10 ;
rdf:type up:Binding_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?ligand10 rdfs:subClassOf chebi:62501 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:62501 .
_:411075 a rdf:Statement ;
up:attribution _:411063 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:411076 a rdf:Statement ;
up:attribution _:411064 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:411077 a rdf:Statement ;
up:attribution _:411065 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:411078 a rdf:Statement ;
up:attribution _:411066 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:411079 a rdf:Statement ;
up:attribution _:411067 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:411080 a rdf:Statement ;
up:attribution _:411068 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:290 .
_:411081 a rdf:Statement ;
up:attribution _:411069 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:411082 a rdf:Statement ;
up:attribution _:411070 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005542 .
_:411083 a rdf:Statement ;
up:attribution _:411071 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008033 .
_:411084 a rdf:Statement ;
up:attribution _:411072 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:411085 a rdf:Statement ;
up:source unirule:MF_01175 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:411086 a rdf:Statement ;
up:attribution _:411073 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:411087 a rdf:Statement ;
up:source unirule:MF_01175 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:411088 a rdf:Statement ;
up:attribution _:411074 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01175
#Rule MF_01175 Created by:? on:2006-11-14 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01175 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01175a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01175a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01175a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01175a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP0ADE825 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ADE827 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ADE8MF_0117520 .
?templateMotifSequenceMatchRegionP0ADE825 faldo:begin ?templateMotifSequenceMatchBeginP0ADE826 .
?templateMotifSequenceMatchBeginP0ADE826 faldo:position ?templateMotifSequenceMatchBeginPositionP0ADE821 ;
faldo:reference isoform:P0ADE8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ADE827 edam:has_input signature:MF_01175 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0117531 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ADE8MF_0117522 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0117530 .
?targetMotifMatchRegionMatchBeginMF_0117530 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117523 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0117531 edam:has_input signature:MF_01175 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ADE8MF_0117520, 1, (STRLEN(?templateMotifCigarP0ADE8MF_0117520) - STRLEN(REPLACE(?templateMotifCigarP0ADE8MF_0117520, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP0ADE821) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ADE8MF_0117522, 1, (STRLEN(?targetMotifMatchCigarP0ADE8MF_0117522) - STRLEN(REPLACE(?targetMotifMatchCigarP0ADE8MF_0117522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ADE8MF_0117522, 1, (STRLEN(?targetMotifMatchCigarP0ADE8MF_0117522) - STRLEN(REPLACE(?targetMotifMatchCigarP0ADE8MF_0117522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0117523) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_01175a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP0ADE840 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ADE842 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ADE8MF_0117535 .
?templateMotifSequenceMatchRegionP0ADE840 faldo:begin ?templateMotifSequenceMatchBeginP0ADE841 .
?templateMotifSequenceMatchBeginP0ADE841 faldo:position ?templateMotifSequenceMatchBeginPositionP0ADE836 ;
faldo:reference isoform:P0ADE8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ADE842 edam:has_input signature:MF_01175 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0117546 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ADE8MF_0117537 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0117545 .
?targetMotifMatchRegionMatchBeginMF_0117545 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117538 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0117546 edam:has_input signature:MF_01175 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ADE8MF_0117535, 1, (STRLEN(?templateMotifCigarP0ADE8MF_0117535) - STRLEN(REPLACE(?templateMotifCigarP0ADE8MF_0117535, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP0ADE836) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ADE8MF_0117537, 1, (STRLEN(?targetMotifMatchCigarP0ADE8MF_0117537) - STRLEN(REPLACE(?targetMotifMatchCigarP0ADE8MF_0117537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ADE8MF_0117537, 1, (STRLEN(?targetMotifMatchCigarP0ADE8MF_0117537) - STRLEN(REPLACE(?targetMotifMatchCigarP0ADE8MF_0117537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0117538) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_01175a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon50 {taxon:561 taxon:620 taxon:590}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon50 .
BIND(?this AS ?case5) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01175 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01175#construct |
