| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-4 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-21 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-15 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-2 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-29 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_01178#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01178#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_01178#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01178#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01178#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01178#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01178#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01178#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:412035 up:source unirule:MF_01178 .
_:412036 up:source unirule:MF_01178 .
_:412037 up:source unirule:MF_01178 .
_:412038 up:source unirule:MF_01178 .
_:412039 up:source unirule:MF_01178 .
_:412040 up:source unirule:MF_01178 .
_:412041 up:source unirule:MF_01178 .
_:412042 up:source unirule:MF_01178 .
_:412043 up:source unirule:MF_01178 .
_:412044 up:source unirule:MF_01178 .
_:412045 up:source unirule:MF_01178 .
_:412046 up:source unirule:MF_01178 .
_:412047 up:source unirule:MF_01178 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005737 ,
GO:0045893 ,
keyword:10 ,
keyword:804 ,
keyword:805 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Sigma factor-binding protein Crl' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'crl' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Crl family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Essential for activity' .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?sam12 up:classifiedWith keyword:175 .
?coiledCoil13 faldo:begin ?coiledCoilb14 ;
faldo:end ?coiledCoile15 .
?coiledCoilb14 faldo:position ?coiledCoilbp16 .
?coiledCoile15 faldo:position ?coiledCoilep17 .
?keyword18 up:range ?coiledCoil13 .
_:412048 a rdf:Statement ;
up:attribution _:412035 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:412049 a rdf:Statement ;
up:attribution _:412036 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:412050 a rdf:Statement ;
up:attribution _:412037 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:412051 a rdf:Statement ;
up:attribution _:412038 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:412052 a rdf:Statement ;
up:attribution _:412039 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:412053 a rdf:Statement ;
up:attribution _:412040 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:412054 a rdf:Statement ;
up:attribution _:412041 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:10 .
_:412055 a rdf:Statement ;
up:attribution _:412042 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:412056 a rdf:Statement ;
up:attribution _:412043 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:412057 a rdf:Statement ;
up:attribution _:412044 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0045893 .
_:412058 a rdf:Statement ;
up:attribution _:412045 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:412059 a rdf:Statement ;
up:source unirule:MF_01178 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:412060 a rdf:Statement ;
up:attribution _:412046 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:412061 a rdf:Statement ;
up:attribution _:412047 ;
rdf:subject ?sam12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01178
#Rule MF_01178 Created by:? on:2006-11-24 Modified by:Catherine Rivoire on:2022-06-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01178 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01178a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01178a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01178a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01178a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch23 faldo:location ?templateMotifSequenceMatchRegionP2425124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2425126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24251MF_0117819 .
?templateMotifSequenceMatchRegionP2425124 faldo:begin ?templateMotifSequenceMatchBeginP2425125 .
?templateMotifSequenceMatchBeginP2425125 faldo:position ?templateMotifSequenceMatchBeginPositionP2425120 ;
faldo:reference isoform:P24251-1 .
?templateMotifSequenceProfileAlignmentOperationP2425126 edam:has_input signature:MF_01178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch27 faldo:location ?targetMotifMatchRegionMatch28 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0117830 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24251MF_0117821 .
?targetMotifMatchRegionMatch28 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0117829 .
?targetMotifMatchRegionMatchBeginMF_0117829 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117822 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0117830 edam:has_input signature:MF_01178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24251MF_0117819, 1, (STRLEN(?templateMotifCigarP24251MF_0117819) - STRLEN(REPLACE(?templateMotifCigarP24251MF_0117819, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP2425120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24251MF_0117821, 1, (STRLEN(?targetMotifMatchCigarP24251MF_0117821) - STRLEN(REPLACE(?targetMotifMatchCigarP24251MF_0117821, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24251MF_0117821, 1, (STRLEN(?targetMotifMatchCigarP24251MF_0117821) - STRLEN(REPLACE(?targetMotifMatchCigarP24251MF_0117821, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0117822) - 1) AS ?thisPositionOn10) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24251MF_0117819, 1, (STRLEN(?templateMotifCigarP24251MF_0117819) - STRLEN(REPLACE(?templateMotifCigarP24251MF_0117819, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP2425120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24251MF_0117821, 1, (STRLEN(?targetMotifMatchCigarP24251MF_0117821) - STRLEN(REPLACE(?targetMotifMatchCigarP24251MF_0117821, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24251MF_0117821, 1, (STRLEN(?targetMotifMatchCigarP24251MF_0117821) - STRLEN(REPLACE(?targetMotifMatchCigarP24251MF_0117821, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), '')))), '[^-]', ''))) AS ?step234) .
BIND(((?step234 + ?targetMotifMatchRegionMatchBeginPositionMF_0117822) - 1) AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER ((BOUND(?thisPositionOn10) && BOUND(?thisPositionOn11))) .
BIND(URI(CONCAT(STR(?this), '#MF_01178a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:annotation ?samcc36 ;
up:sequence ?thisSequence .
?samcc36 up:range ?samccr37 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr37 faldo:begin ?samccb38 ;
faldo:end ?samcce39 .
?samccb38 faldo:position ?samccbp40 ;
faldo:reference ?thisSequence .
?samcce39 faldo:position ?samccep41 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam12) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01178a18')) AS ?keyword18) .
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01178 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01178#construct |
