| http://purl.uniprot.org/unirules/MF_01202#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:420472 up:source unirule:MF_01202 .
_:420473 up:source unirule:MF_01202 .
_:420474 up:source unirule:MF_01202 .
_:420475 up:source unirule:MF_01202 .
_:420476 up:source unirule:MF_01202 .
_:420477 up:source unirule:MF_01202 .
_:420478 up:source unirule:MF_01202 .
_:420479 up:source unirule:MF_01202 .
_:420480 up:source unirule:MF_01202 .
_:420481 up:source unirule:MF_01202 .
_:420482 up:source unirule:MF_01202 .
_:420483 up:source unirule:MF_01202 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0008718 ,
GO:0019478 ,
keyword:274 ,
keyword:285 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.4.99.-' ;
up:fullName 'D-amino acid dehydrogenase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dadA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Oxidative deamination of D-amino acids.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DadA oxidoreductase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:57692 .
_:420484 a rdf:Statement ;
up:attribution _:420472 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:420485 a rdf:Statement ;
up:attribution _:420473 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:420486 a rdf:Statement ;
up:attribution _:420474 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:420487 a rdf:Statement ;
up:attribution _:420475 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:420488 a rdf:Statement ;
up:attribution _:420476 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:420489 a rdf:Statement ;
up:attribution _:420477 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:420490 a rdf:Statement ;
up:attribution _:420478 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:420491 a rdf:Statement ;
up:attribution _:420479 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:420492 a rdf:Statement ;
up:attribution _:420480 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:420493 a rdf:Statement ;
up:attribution _:420481 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008718 .
_:420494 a rdf:Statement ;
up:attribution _:420482 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019478 .
_:420495 a rdf:Statement ;
up:source unirule:MF_01202 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:420496 a rdf:Statement ;
up:attribution _:420483 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01202
#Rule MF_01202 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01202 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01202a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01202a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01202a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01202a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01202a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP0A6J519 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6J521 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6J5MF_0120214 .
?templateMotifSequenceMatchRegionP0A6J519 faldo:begin ?templateMotifSequenceMatchBeginP0A6J520 .
?templateMotifSequenceMatchBeginP0A6J520 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6J515 ;
faldo:reference isoform:P0A6J5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6J521 edam:has_input signature:MF_01202 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0120225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6J5MF_0120216 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0120224 .
?targetMotifMatchRegionMatchBeginMF_0120224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0120217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0120225 edam:has_input signature:MF_01202 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6J5MF_0120214, 1, (STRLEN(?templateMotifCigarP0A6J5MF_0120214) - STRLEN(REPLACE(?templateMotifCigarP0A6J5MF_0120214, CONCAT('^(?:-*[^-]){', STR(((3 - ?templateMotifSequenceMatchBeginPositionP0A6J515) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6J5MF_0120216, 1, (STRLEN(?targetMotifMatchCigarP0A6J5MF_0120216) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6J5MF_0120216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6J5MF_0120216, 1, (STRLEN(?targetMotifMatchCigarP0A6J5MF_0120216) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6J5MF_0120216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0120217) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6J5MF_0120214, 1, (STRLEN(?templateMotifCigarP0A6J5MF_0120214) - STRLEN(REPLACE(?templateMotifCigarP0A6J5MF_0120214, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP0A6J515) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6J5MF_0120216, 1, (STRLEN(?targetMotifMatchCigarP0A6J5MF_0120216) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6J5MF_0120216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6J5MF_0120216, 1, (STRLEN(?targetMotifMatchCigarP0A6J5MF_0120216) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6J5MF_0120216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) .
BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0120217) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_01202a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
}
"xsd:string |
