| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-0 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-37 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-35 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-52 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-16 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-31 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_01215#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01215#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_01215#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01215#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01215#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01215#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01215#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01215#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:427632 up:source unirule:MF_01215 .
_:427633 up:source unirule:MF_01215 .
_:427634 up:source unirule:MF_01215 .
_:427635 up:source unirule:MF_01215 .
_:427636 up:source unirule:MF_01215 .
_:427637 up:source unirule:MF_01215 .
_:427638 up:source unirule:MF_01215 .
_:427639 up:source unirule:MF_01215 .
_:427640 up:source unirule:MF_01215 .
_:427641 up:source unirule:MF_01215 .
_:427642 up:source unirule:MF_01215 .
_:427643 up:source unirule:MF_01215 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0004590 ,
GO:0044205 ,
keyword:210 ,
keyword:456 ,
keyword:665 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.23' ;
up:fullName "Orotidine 5'-phosphate decarboxylase" ;
rdf:type up:Structured_Name .
?name1 up:fullName 'OMP decarboxylase' ;
up:shortName 'OMPDCase' ,
'OMPdecase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pyrF' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the OMP decarboxylase family. Type 2 subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
_:427644 a rdf:Statement ;
up:attribution _:427632 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:427645 a rdf:Statement ;
up:attribution _:427633 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:427646 a rdf:Statement ;
up:attribution _:427634 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:427647 a rdf:Statement ;
up:attribution _:427635 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:427648 a rdf:Statement ;
up:attribution _:427636 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:427649 a rdf:Statement ;
up:attribution _:427637 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:427650 a rdf:Statement ;
up:attribution _:427638 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:427651 a rdf:Statement ;
up:attribution _:427639 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:210 .
_:427652 a rdf:Statement ;
up:attribution _:427640 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:665 .
_:427653 a rdf:Statement ;
up:attribution _:427641 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004590 .
_:427654 a rdf:Statement ;
up:attribution _:427642 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044205 .
_:427655 a rdf:Statement ;
up:source unirule:MF_01215 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:427656 a rdf:Statement ;
up:attribution _:427643 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01215
#Rule MF_01215 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon13 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01215 .
?thisOrganism rdfs:subClassOf+ ?supertaxon13 .
BIND(URI(CONCAT(STR(?this), '#MF_01215a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01215a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01215a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01215a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01215a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionQ9RSC519 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9RSC521 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9RSC5MF_0121514 .
?templateMotifSequenceMatchRegionQ9RSC519 faldo:begin ?templateMotifSequenceMatchBeginQ9RSC520 .
?templateMotifSequenceMatchBeginQ9RSC520 faldo:position ?templateMotifSequenceMatchBeginPositionQ9RSC515 ;
faldo:reference isoform:Q9RSC5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9RSC521 edam:has_input signature:MF_01215 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0121525 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9RSC5MF_0121516 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0121524 .
?targetMotifMatchRegionMatchBeginMF_0121524 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0121517 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0121525 edam:has_input signature:MF_01215 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9RSC5MF_0121514, 1, (STRLEN(?templateMotifCigarQ9RSC5MF_0121514) - STRLEN(REPLACE(?templateMotifCigarQ9RSC5MF_0121514, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionQ9RSC515) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9RSC5MF_0121516, 1, (STRLEN(?targetMotifMatchCigarQ9RSC5MF_0121516) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RSC5MF_0121516, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9RSC5MF_0121516, 1, (STRLEN(?targetMotifMatchCigarQ9RSC5MF_0121516) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RSC5MF_0121516, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0121517) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01215a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01215 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01215#construct |
