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http://purl.uniprot.org/unirules/MF_01325#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_01325#construct-template-list-0
http://purl.uniprot.org/unirules/MF_01325#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:475959 up:source unirule:MF_01325 . _:475960 up:source unirule:MF_01325 . _:475961 up:source unirule:MF_01325 . _:475962 up:source unirule:MF_01325 . _:475963 up:source unirule:MF_01325 . _:475964 up:source unirule:MF_01325 . _:475965 up:source unirule:MF_01325 . _:475966 up:source unirule:MF_01325 . _:475967 up:source unirule:MF_01325 . _:475968 up:source unirule:MF_01325 . _:475969 up:source unirule:MF_01325 . ?this up:annotation ?annotation0 , ?annotation1 ; up:classifiedWith GO:0006412 , GO:0019843 , keyword:687 , keyword:689 , keyword:694 , keyword:699 . ?annotation0 a up:Function_Annotation ; rdfs:comment "One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit." . ?annotation1 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the universal ribosomal protein uL3 family.' . ?case2 up:classifiedWith keyword:488 . ?case3 up:classifiedWith GO:0009507 . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N5-methylglutamine' . ?pfsb12 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . _:475970 a rdf:Statement ; up:attribution _:475959 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:475971 a rdf:Statement ; up:attribution _:475960 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:475972 a rdf:Statement ; up:attribution _:475961 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:687 . _:475973 a rdf:Statement ; up:attribution _:475962 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:689 . _:475974 a rdf:Statement ; up:attribution _:475963 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:475975 a rdf:Statement ; up:attribution _:475964 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:699 . _:475976 a rdf:Statement ; up:attribution _:475965 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019843 . _:475977 a rdf:Statement ; up:attribution _:475966 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006412 . _:475978 a rdf:Statement ; up:attribution _:475967 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object keyword:488 . _:475979 a rdf:Statement ; up:attribution _:475968 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009507 . _:475980 a rdf:Statement ; up:source unirule:MF_01325 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:475981 a rdf:Statement ; up:attribution _:475969 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01325 #Rule MF_01325 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2023-09-22 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01325_B . ?thisOrganism rdfs:subClassOf+ taxon:2 . } UNION { ?this rdfs:seeAlso signature:MF_01325_B . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01325_A . ?thisOrganism rdfs:subClassOf+ taxon:2157 . } BIND(URI(CONCAT(STR(?this), '#MF_01325a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_01325a1')) AS ?annotation1) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch20 faldo:location ?templateMotifSequenceMatchRegionP6043821 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6043823 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP60438MF_01325_B16 . ?templateMotifSequenceMatchRegionP6043821 faldo:begin ?templateMotifSequenceMatchBeginP6043822 . ?templateMotifSequenceMatchBeginP6043822 faldo:position ?templateMotifSequenceMatchBeginPositionP6043817 ; faldo:reference isoform:P60438-1 . ?templateMotifSequenceProfileAlignmentOperationP6043823 edam:has_input signature:MF_01325_B ; rdf:type edam:operation_0300 . ?targetMotifMatch24 faldo:location ?targetMotifMatchRegionMatch25 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01325_B27 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP60438MF_01325_B18 . ?targetMotifMatchRegionMatch25 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01325_B26 . ?targetMotifMatchRegionMatchBeginMF_01325_B26 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01325_B19 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01325_B27 edam:has_input signature:MF_01325_B ; rdf:type edam:operation_0300 . BIND(?this AS ?tagMethylation) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60438MF_01325_B16, 1, (STRLEN(?templateMotifCigarP60438MF_01325_B16) - STRLEN(REPLACE(?templateMotifCigarP60438MF_01325_B16, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP6043817) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60438MF_01325_B18, 1, (STRLEN(?targetMotifMatchCigarP60438MF_01325_B18) - STRLEN(REPLACE(?targetMotifMatchCigarP60438MF_01325_B18, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60438MF_01325_B18, 1, (STRLEN(?targetMotifMatchCigarP60438MF_01325_B18) - STRLEN(REPLACE(?targetMotifMatchCigarP60438MF_01325_B18, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) . BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_01325_B19) - 1) AS ?thisPositionOn14) . BIND(?thisPositionOn14 AS ?thisPositionOn15) . BIND(?this AS ?pfs1t30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_01325a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag31) . } BIND(IF(BOUND(?tagMethylation), ?caseWithTag31, ?UNBOUND_VARIABLE) AS ?case2) . OPTIONAL { ?this a up:Protein . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case3) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1117 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(?this AS ?caseWithTag32) . } BIND(IF(BOUND(?tagMethylation), ?caseWithTag32, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } FILTER (! (EXISTS { VALUES ?supertaxon33 {taxon:2157 taxon:2} ?thisOrganism rdfs:subClassOf+ ?supertaxon33 . })) . BIND(?this AS ?case9) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_01325http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_01325#construct
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