| http://purl.uniprot.org/unirules/MF_01330#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:477541 up:source unirule:MF_01330 .
_:477542 up:source unirule:MF_01330 .
_:477543 up:source unirule:MF_01330 .
_:477544 up:source unirule:MF_01330 .
_:477545 up:source unirule:MF_01330 .
_:477546 up:source unirule:MF_01330 .
_:477547 up:source unirule:MF_01330 .
_:477548 up:source unirule:MF_01330 .
_:477549 up:source unirule:MF_01330 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith keyword:547 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Protein Ycf2' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ycf2' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Probable ATPase of unknown function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Ycf2 family.' .
?case6 up:classifiedWith GO:0009570 .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:30616 .
_:477550 a rdf:Statement ;
up:attribution _:477541 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:477551 a rdf:Statement ;
up:attribution _:477542 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:477552 a rdf:Statement ;
up:attribution _:477543 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:477553 a rdf:Statement ;
up:attribution _:477544 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:477554 a rdf:Statement ;
up:attribution _:477545 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:477555 a rdf:Statement ;
up:attribution _:477546 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:477556 a rdf:Statement ;
up:attribution _:477547 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:477557 a rdf:Statement ;
up:attribution _:477548 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009570 .
_:477558 a rdf:Statement ;
up:source unirule:MF_01330 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:477559 a rdf:Statement ;
up:attribution _:477549 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01330
#Rule MF_01330 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2022-11-19
{
?this rdfs:seeAlso signature:MF_01330 .
} UNION {
?this rdfs:seeAlso signature:MF_01330 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_01330a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01330a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01330a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01330a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP0997619 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0997621 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP09976MF_0133014 .
?templateMotifSequenceMatchRegionP0997619 faldo:begin ?templateMotifSequenceMatchBeginP0997620 .
?templateMotifSequenceMatchBeginP0997620 faldo:position ?templateMotifSequenceMatchBeginPositionP0997615 ;
faldo:reference isoform:P09976-1 .
?templateMotifSequenceProfileAlignmentOperationP0997621 edam:has_input signature:MF_01330 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0133025 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP09976MF_0133016 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0133024 .
?targetMotifMatchRegionMatchBeginMF_0133024 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0133017 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0133025 edam:has_input signature:MF_01330 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP09976MF_0133014, 1, (STRLEN(?templateMotifCigarP09976MF_0133014) - STRLEN(REPLACE(?templateMotifCigarP09976MF_0133014, CONCAT('^(?:-*[^-]){', STR(((1631 - ?templateMotifSequenceMatchBeginPositionP0997615) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP09976MF_0133016, 1, (STRLEN(?targetMotifMatchCigarP09976MF_0133016) - STRLEN(REPLACE(?targetMotifMatchCigarP09976MF_0133016, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP09976MF_0133016, 1, (STRLEN(?targetMotifMatchCigarP09976MF_0133016) - STRLEN(REPLACE(?targetMotifMatchCigarP09976MF_0133016, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0133017) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP09976MF_0133014, 1, (STRLEN(?templateMotifCigarP09976MF_0133014) - STRLEN(REPLACE(?templateMotifCigarP09976MF_0133014, CONCAT('^(?:-*[^-]){', STR(((1638 - ?templateMotifSequenceMatchBeginPositionP0997615) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP09976MF_0133016, 1, (STRLEN(?targetMotifMatchCigarP09976MF_0133016) - STRLEN(REPLACE(?targetMotifMatchCigarP09976MF_0133016, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP09976MF_0133016, 1, (STRLEN(?targetMotifMatchCigarP09976MF_0133016) - STRLEN(REPLACE(?targetMotifMatchCigarP09976MF_0133016, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) .
BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0133017) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)G[KR]S', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01330a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case6) .
}
}
"xsd:string |
