| http://purl.uniprot.org/unirules/MF_01389#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:501701 up:source unirule:MF_01389 .
_:501702 up:source unirule:MF_01389 .
_:501703 up:source unirule:MF_01389 .
_:501704 up:source unirule:MF_01389 .
_:501705 up:source unirule:MF_01389 .
_:501706 up:source unirule:MF_01389 .
_:501707 up:source unirule:MF_01389 .
_:501708 up:source unirule:MF_01389 .
_:501709 up:source unirule:MF_01389 .
_:501710 up:source unirule:MF_01389 .
_:501711 up:source unirule:MF_01389 .
_:501712 up:source unirule:MF_01389 .
_:501713 up:source unirule:MF_01389 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005737 ,
GO:0016151 ,
keyword:143 ,
keyword:342 ,
keyword:547 ,
keyword:963 ,
keyword:996 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Urease accessory protein UreG' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ureG' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SIMIBI class G3E GTPase family. UreG subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:37565 .
_:501714 a rdf:Statement ;
up:attribution _:501701 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:501715 a rdf:Statement ;
up:attribution _:501702 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:501716 a rdf:Statement ;
up:attribution _:501703 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:501717 a rdf:Statement ;
up:attribution _:501704 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:501718 a rdf:Statement ;
up:attribution _:501705 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:501719 a rdf:Statement ;
up:attribution _:501706 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:143 .
_:501720 a rdf:Statement ;
up:attribution _:501707 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:501721 a rdf:Statement ;
up:attribution _:501708 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:501722 a rdf:Statement ;
up:attribution _:501709 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:996 .
_:501723 a rdf:Statement ;
up:attribution _:501710 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:501724 a rdf:Statement ;
up:attribution _:501711 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016151 .
_:501725 a rdf:Statement ;
up:attribution _:501712 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:501726 a rdf:Statement ;
up:source unirule:MF_01389 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:501727 a rdf:Statement ;
up:attribution _:501713 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01389
#Rule MF_01389 Created by:? on:2008-07-24 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon15 {taxon:201174 taxon:976 taxon:200795 taxon:1117 taxon:1297 taxon:1239 taxon:1224 taxon:162171 taxon:74201 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01389 .
?thisOrganism rdfs:subClassOf+ ?supertaxon15 .
BIND(URI(CONCAT(STR(?this), '#MF_01389a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01389a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01389a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01389a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch20 faldo:location ?templateMotifSequenceMatchRegionQ0906621 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0906623 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ09066MF_0138916 .
?templateMotifSequenceMatchRegionQ0906621 faldo:begin ?templateMotifSequenceMatchBeginQ0906622 .
?templateMotifSequenceMatchBeginQ0906622 faldo:position ?templateMotifSequenceMatchBeginPositionQ0906617 ;
faldo:reference isoform:Q09066-1 .
?templateMotifSequenceProfileAlignmentOperationQ0906623 edam:has_input signature:MF_01389 ;
rdf:type edam:operation_0300 .
?targetMotifMatch24 faldo:location ?targetMotifMatchRegionMatch25 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0138927 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ09066MF_0138918 .
?targetMotifMatchRegionMatch25 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0138926 .
?targetMotifMatchRegionMatchBeginMF_0138926 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0138919 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0138927 edam:has_input signature:MF_01389 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ09066MF_0138916, 1, (STRLEN(?templateMotifCigarQ09066MF_0138916) - STRLEN(REPLACE(?templateMotifCigarQ09066MF_0138916, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionQ0906617) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ09066MF_0138918, 1, (STRLEN(?targetMotifMatchCigarQ09066MF_0138918) - STRLEN(REPLACE(?targetMotifMatchCigarQ09066MF_0138918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ09066MF_0138918, 1, (STRLEN(?targetMotifMatchCigarQ09066MF_0138918) - STRLEN(REPLACE(?targetMotifMatchCigarQ09066MF_0138918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) .
BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0138919) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ09066MF_0138916, 1, (STRLEN(?templateMotifCigarQ09066MF_0138916) - STRLEN(REPLACE(?templateMotifCigarQ09066MF_0138916, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionQ0906617) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ09066MF_0138918, 1, (STRLEN(?targetMotifMatchCigarQ09066MF_0138918) - STRLEN(REPLACE(?targetMotifMatchCigarQ09066MF_0138918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ09066MF_0138918, 1, (STRLEN(?targetMotifMatchCigarQ09066MF_0138918) - STRLEN(REPLACE(?targetMotifMatchCigarQ09066MF_0138918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) .
BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0138919) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[GA][PR][VW][GA][STAP][GA][KR][TSHRM]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01389a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:209 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:209 .
})) .
BIND(?this AS ?case7) .
}
}
"xsd:string |
