| http://purl.uniprot.org/unirules/MF_01411#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:510782 up:source unirule:MF_01411 .
_:510783 up:source unirule:MF_01411 .
_:510784 up:source unirule:MF_01411 .
_:510785 up:source unirule:MF_01411 .
_:510786 up:source unirule:MF_01411 .
_:510787 up:source unirule:MF_01411 .
_:510788 up:source unirule:MF_01411 .
_:510789 up:source unirule:MF_01411 .
_:510790 up:source unirule:MF_01411 .
_:510791 up:source unirule:MF_01411 .
_:510792 up:source unirule:MF_01411 .
_:510793 up:source unirule:MF_01411 .
_:510794 up:source unirule:MF_01411 .
?this up:annotation ?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0009279 ,
GO:0043165 ,
keyword:472 ,
keyword:732 ,
keyword:998 ;
up:recommendedName ?name0 .
?name0 up:fullName 'LPS-assembly protein LptD' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'lptD' .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the LptD family.' .
?case5 up:classifiedWith keyword:1015 .
?pfs8 up:annotation ?annotation9 ,
?annotation14 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?sam19 up:classifiedWith keyword:732 .
?signal20 faldo:begin ?signalb21 ;
faldo:end ?signale22 .
?signalb21 faldo:position ?signalbp23 .
?signale22 faldo:position ?signalep24 .
?keyword25 up:range ?signal20 .
_:510795 a rdf:Statement ;
up:attribution _:510782 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:510796 a rdf:Statement ;
up:attribution _:510783 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:510797 a rdf:Statement ;
up:attribution _:510784 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:510798 a rdf:Statement ;
up:attribution _:510785 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:510799 a rdf:Statement ;
up:attribution _:510786 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:998 .
_:510800 a rdf:Statement ;
up:attribution _:510787 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:510801 a rdf:Statement ;
up:attribution _:510788 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:510802 a rdf:Statement ;
up:attribution _:510789 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043165 .
_:510803 a rdf:Statement ;
up:attribution _:510790 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009279 .
_:510804 a rdf:Statement ;
up:attribution _:510791 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:510805 a rdf:Statement ;
up:source unirule:MF_01411 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:510806 a rdf:Statement ;
up:attribution _:510792 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:510807 a rdf:Statement ;
up:source unirule:MF_01411 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:510808 a rdf:Statement ;
up:attribution _:510793 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:510809 a rdf:Statement ;
up:attribution _:510794 ;
rdf:subject ?sam19 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01411
#Rule MF_01411 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-01-26
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01411 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01411a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01411a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01411a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionP3155431 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3155433 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31554MF_0141126 .
?templateMotifSequenceMatchRegionP3155431 faldo:begin ?templateMotifSequenceMatchBeginP3155432 .
?templateMotifSequenceMatchBeginP3155432 faldo:position ?templateMotifSequenceMatchBeginPositionP3155427 ;
faldo:reference isoform:P31554-1 .
?templateMotifSequenceProfileAlignmentOperationP3155433 edam:has_input signature:MF_01411 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0141137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31554MF_0141128 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0141136 .
?targetMotifMatchRegionMatchBeginMF_0141136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0141129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0141137 edam:has_input signature:MF_01411 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31554MF_0141126, 1, (STRLEN(?templateMotifCigarP31554MF_0141126) - STRLEN(REPLACE(?templateMotifCigarP31554MF_0141126, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP3155427) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31554MF_0141128, 1, (STRLEN(?targetMotifMatchCigarP31554MF_0141128) - STRLEN(REPLACE(?targetMotifMatchCigarP31554MF_0141128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31554MF_0141128, 1, (STRLEN(?targetMotifMatchCigarP31554MF_0141128) - STRLEN(REPLACE(?targetMotifMatchCigarP31554MF_0141128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0141129) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31554MF_0141126, 1, (STRLEN(?templateMotifCigarP31554MF_0141126) - STRLEN(REPLACE(?templateMotifCigarP31554MF_0141126, CONCAT('^(?:-*[^-]){', STR(((724 - ?templateMotifSequenceMatchBeginPositionP3155427) + 1)), '}'), '')))), '[a-z]', '')) AS ?step140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31554MF_0141128, 1, (STRLEN(?targetMotifMatchCigarP31554MF_0141128) - STRLEN(REPLACE(?targetMotifMatchCigarP31554MF_0141128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31554MF_0141128, 1, (STRLEN(?targetMotifMatchCigarP31554MF_0141128) - STRLEN(REPLACE(?targetMotifMatchCigarP31554MF_0141128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), '')))), '[^-]', ''))) AS ?step241) .
BIND(((?step241 + ?targetMotifMatchRegionMatchBeginPositionMF_0141129) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31554MF_0141126, 1, (STRLEN(?templateMotifCigarP31554MF_0141126) - STRLEN(REPLACE(?templateMotifCigarP31554MF_0141126, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP3155427) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31554MF_0141128, 1, (STRLEN(?targetMotifMatchCigarP31554MF_0141128) - STRLEN(REPLACE(?targetMotifMatchCigarP31554MF_0141128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31554MF_0141128, 1, (STRLEN(?targetMotifMatchCigarP31554MF_0141128) - STRLEN(REPLACE(?targetMotifMatchCigarP31554MF_0141128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0141129) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31554MF_0141126, 1, (STRLEN(?templateMotifCigarP31554MF_0141126) - STRLEN(REPLACE(?templateMotifCigarP31554MF_0141126, CONCAT('^(?:-*[^-]){', STR(((725 - ?templateMotifSequenceMatchBeginPositionP3155427) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31554MF_0141128, 1, (STRLEN(?targetMotifMatchCigarP31554MF_0141128) - STRLEN(REPLACE(?targetMotifMatchCigarP31554MF_0141128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31554MF_0141128, 1, (STRLEN(?targetMotifMatchCigarP31554MF_0141128) - STRLEN(REPLACE(?targetMotifMatchCigarP31554MF_0141128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0141129) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag48) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag48, ?UNBOUND_VARIABLE) AS ?case5) .
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon49 {taxon:1236 taxon:28216}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon49 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon50 {taxon:1236 taxon:28216}
?thisOrganism rdfs:subClassOf+ ?supertaxon50 .
})) .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this up:annotation ?samsignal51 ;
up:sequence ?thisSequence .
?samsignal51 up:range ?samsignalr52 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr52 faldo:begin ?samsignalb53 ;
faldo:end ?samsignale54 .
?samsignalb53 faldo:position ?samsignalbp55 ;
faldo:reference ?thisSequence .
?samsignale54 faldo:position ?samsignalep56 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam19) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01411a25')) AS ?keyword25) .
}
"xsd:string |
