| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-30 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-33 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-11 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-35 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-32 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-19 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-8 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-10 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-12 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-0 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-6 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_01543#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01543#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_01543#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01543#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01543#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01543#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01543#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01543#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:559644 up:source unirule:MF_01543 .
_:559645 up:source unirule:MF_01543 .
_:559646 up:source unirule:MF_01543 .
_:559647 up:source unirule:MF_01543 .
_:559648 up:source unirule:MF_01543 .
_:559649 up:source unirule:MF_01543 .
_:559650 up:source unirule:MF_01543 .
_:559651 up:source unirule:MF_01543 .
_:559652 up:source unirule:MF_01543 .
_:559653 up:source unirule:MF_01543 .
_:559654 up:source unirule:MF_01543 .
_:559655 up:source unirule:MF_01543 .
_:559656 up:source unirule:MF_01543 .
_:559657 up:source unirule:MF_01543 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0004329 ,
GO:0005524 ,
GO:0035999 ,
keyword:436 ,
keyword:547 ,
keyword:554 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.4.3' ;
up:fullName 'Formate--tetrahydrofolate ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Formyltetrahydrofolate synthetase' ;
up:shortName 'FHS' ,
'FTHFS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'fhs' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'One-carbon metabolism; tetrahydrofolate interconversion.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the formate--tetrahydrofolate ligase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:30616 .
_:559658 a rdf:Statement ;
up:attribution _:559644 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:559659 a rdf:Statement ;
up:attribution _:559645 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:559660 a rdf:Statement ;
up:attribution _:559646 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:559661 a rdf:Statement ;
up:attribution _:559647 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:559662 a rdf:Statement ;
up:attribution _:559648 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:559663 a rdf:Statement ;
up:attribution _:559649 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:559664 a rdf:Statement ;
up:attribution _:559650 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:559665 a rdf:Statement ;
up:attribution _:559651 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:559666 a rdf:Statement ;
up:attribution _:559652 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:559667 a rdf:Statement ;
up:attribution _:559653 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:554 .
_:559668 a rdf:Statement ;
up:attribution _:559654 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004329 .
_:559669 a rdf:Statement ;
up:attribution _:559655 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:559670 a rdf:Statement ;
up:attribution _:559656 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0035999 .
_:559671 a rdf:Statement ;
up:source unirule:MF_01543 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:559672 a rdf:Statement ;
up:attribution _:559657 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01543
#Rule MF_01543 Created by:? on:2005-11-15 Modified by:Catherine Rivoire on:2024-10-08
VALUES ?supertaxon14 {taxon:2 taxon:3366610}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01543 .
?thisOrganism rdfs:subClassOf+ ?supertaxon14 .
BIND(URI(CONCAT(STR(?this), '#MF_01543a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01543a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01543a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01543a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01543a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP2116420 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2116422 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21164MF_0154315 .
?templateMotifSequenceMatchRegionP2116420 faldo:begin ?templateMotifSequenceMatchBeginP2116421 .
?templateMotifSequenceMatchBeginP2116421 faldo:position ?templateMotifSequenceMatchBeginPositionP2116416 ;
faldo:reference isoform:P21164-1 .
?templateMotifSequenceProfileAlignmentOperationP2116422 edam:has_input signature:MF_01543 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0154326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21164MF_0154317 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0154325 .
?targetMotifMatchRegionMatchBeginMF_0154325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0154318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0154326 edam:has_input signature:MF_01543 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21164MF_0154315, 1, (STRLEN(?templateMotifCigarP21164MF_0154315) - STRLEN(REPLACE(?templateMotifCigarP21164MF_0154315, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP2116416) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21164MF_0154317, 1, (STRLEN(?targetMotifMatchCigarP21164MF_0154317) - STRLEN(REPLACE(?targetMotifMatchCigarP21164MF_0154317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21164MF_0154317, 1, (STRLEN(?targetMotifMatchCigarP21164MF_0154317) - STRLEN(REPLACE(?targetMotifMatchCigarP21164MF_0154317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0154318) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21164MF_0154315, 1, (STRLEN(?templateMotifCigarP21164MF_0154315) - STRLEN(REPLACE(?templateMotifCigarP21164MF_0154315, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionP2116416) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21164MF_0154317, 1, (STRLEN(?targetMotifMatchCigarP21164MF_0154317) - STRLEN(REPLACE(?targetMotifMatchCigarP21164MF_0154317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21164MF_0154317, 1, (STRLEN(?targetMotifMatchCigarP21164MF_0154317) - STRLEN(REPLACE(?targetMotifMatchCigarP21164MF_0154317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0154318) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('[TS][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G[EIV]GK[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01543a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01543 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01543#construct |
