| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-45 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_01587#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01587#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_01587#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01587#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01587#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01587#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01587#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01587#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:573878 up:source unirule:MF_01587 .
_:573879 up:source unirule:MF_01587 .
_:573880 up:source unirule:MF_01587 .
_:573881 up:source unirule:MF_01587 .
_:573882 up:source unirule:MF_01587 .
_:573883 up:source unirule:MF_01587 .
_:573884 up:source unirule:MF_01587 .
_:573885 up:source unirule:MF_01587 .
_:573886 up:source unirule:MF_01587 .
_:573887 up:source unirule:MF_01587 .
_:573888 up:source unirule:MF_01587 .
_:573889 up:source unirule:MF_01587 .
_:573890 up:source unirule:MF_01587 .
_:573891 up:source unirule:MF_01587 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0003911 ,
GO:0006259 ,
keyword:227 ,
keyword:234 ,
keyword:235 ,
keyword:436 ,
keyword:520 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.5.1.2' ;
up:fullName 'DNA ligase B' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Polydeoxyribonucleotide synthase [NAD(+)] B' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'ligB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NAD-dependent DNA ligase family. LigB subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'N6-AMP-lysine intermediate' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
_:573892 a rdf:Statement ;
up:attribution _:573878 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:573893 a rdf:Statement ;
up:attribution _:573879 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:573894 a rdf:Statement ;
up:attribution _:573880 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:573895 a rdf:Statement ;
up:attribution _:573881 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:573896 a rdf:Statement ;
up:attribution _:573882 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:573897 a rdf:Statement ;
up:attribution _:573883 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:573898 a rdf:Statement ;
up:attribution _:573884 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:573899 a rdf:Statement ;
up:attribution _:573885 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:573900 a rdf:Statement ;
up:attribution _:573886 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:573901 a rdf:Statement ;
up:attribution _:573887 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:573902 a rdf:Statement ;
up:attribution _:573888 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:573903 a rdf:Statement ;
up:attribution _:573889 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003911 .
_:573904 a rdf:Statement ;
up:attribution _:573890 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006259 .
_:573905 a rdf:Statement ;
up:source unirule:MF_01587 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:573906 a rdf:Statement ;
up:attribution _:573891 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01587
#Rule MF_01587 Created by:? on:2007-11-15 Modified by:Edouard de Castro on:2022-04-28
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01587 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01587a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01587a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01587a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01587a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01587a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch17 faldo:location ?templateMotifSequenceMatchRegionP2577218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2577220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP25772MF_0158713 .
?templateMotifSequenceMatchRegionP2577218 faldo:begin ?templateMotifSequenceMatchBeginP2577219 .
?templateMotifSequenceMatchBeginP2577219 faldo:position ?templateMotifSequenceMatchBeginPositionP2577214 ;
faldo:reference isoform:P25772-1 .
?templateMotifSequenceProfileAlignmentOperationP2577220 edam:has_input signature:MF_01587 ;
rdf:type edam:operation_0300 .
?targetMotifMatch21 faldo:location ?targetMotifMatchRegionMatch22 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0158724 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP25772MF_0158715 .
?targetMotifMatchRegionMatch22 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0158723 .
?targetMotifMatchRegionMatchBeginMF_0158723 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0158716 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0158724 edam:has_input signature:MF_01587 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25772MF_0158713, 1, (STRLEN(?templateMotifCigarP25772MF_0158713) - STRLEN(REPLACE(?templateMotifCigarP25772MF_0158713, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP2577214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25772MF_0158715, 1, (STRLEN(?targetMotifMatchCigarP25772MF_0158715) - STRLEN(REPLACE(?targetMotifMatchCigarP25772MF_0158715, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25772MF_0158715, 1, (STRLEN(?targetMotifMatchCigarP25772MF_0158715) - STRLEN(REPLACE(?targetMotifMatchCigarP25772MF_0158715, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), '')))), '[^-]', ''))) AS ?step226) .
BIND(((?step226 + ?targetMotifMatchRegionMatchBeginPositionMF_0158716) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01587a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01587 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01587#construct |
