Home | Contact

Results

RDF/XMLNTriplesTurtleShow queryShare ◀
SubjectPredicateObject
http://purl.uniprot.org/unirules/MF_01607#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:581166 up:source unirule:MF_01607 . _:581167 up:source unirule:MF_01607 . _:581168 up:source unirule:MF_01607 . _:581169 up:source unirule:MF_01607 . _:581170 up:source unirule:MF_01607 . _:581171 up:source unirule:MF_01607 . _:581172 up:source unirule:MF_01607 . _:581173 up:source unirule:MF_01607 . _:581174 up:source unirule:MF_01607 . _:581175 up:source unirule:MF_01607 . ?this up:annotation ?annotation2 , ?annotation3 ; up:classifiedWith GO:0003700 , GO:0006355 , keyword:238 , keyword:804 , keyword:805 ; up:recommendedName ?name0 . ?name0 up:fullName 'HTH-type transcriptional regulator YidZ' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'yidZ' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Involved in anaerobic NO protection.' . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the LysR transcriptional regulatory family.' . ?pfs4 up:annotation ?annotation5 . ?annotation5 faldo:begin ?pfsb6 ; faldo:end ?pfse7 ; rdf:type up:Nucleotide_Binding_Annotation ; rdfs:comment 'H-T-H motif' . ?pfsb6 faldo:position ?thisPositionOn8 ; rdf:type faldo:ExactPosition . ?pfse7 faldo:position ?thisPositionOn9 ; rdf:type faldo:ExactPosition . _:581176 a rdf:Statement ; up:attribution _:581166 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:581177 a rdf:Statement ; up:attribution _:581167 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:581178 a rdf:Statement ; up:attribution _:581168 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:581179 a rdf:Statement ; up:attribution _:581169 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:581180 a rdf:Statement ; up:attribution _:581170 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:581181 a rdf:Statement ; up:attribution _:581171 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:581182 a rdf:Statement ; up:attribution _:581172 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:581183 a rdf:Statement ; up:attribution _:581173 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003700 . _:581184 a rdf:Statement ; up:attribution _:581174 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006355 . _:581185 a rdf:Statement ; up:source unirule:MF_01607 ; rdf:subject ?pfs4 ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:581186 a rdf:Statement ; up:attribution _:581175 ; rdf:subject ?pfs4 ; rdf:predicate up:annotation ; rdf:object ?annotation5 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01607 #Rule MF_01607 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2022-06-28 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01607 . ?thisOrganism rdfs:subClassOf+ taxon:91347 . BIND(URI(CONCAT(STR(?this), '#MF_01607a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01607a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01607a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch14 faldo:location ?templateMotifSequenceMatchRegionP3146315 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3146317 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP31463MF_0160710 . ?templateMotifSequenceMatchRegionP3146315 faldo:begin ?templateMotifSequenceMatchBeginP3146316 . ?templateMotifSequenceMatchBeginP3146316 faldo:position ?templateMotifSequenceMatchBeginPositionP3146311 ; faldo:reference isoform:P31463-1 . ?templateMotifSequenceProfileAlignmentOperationP3146317 edam:has_input signature:MF_01607 ; rdf:type edam:operation_0300 . ?targetMotifMatch18 faldo:location ?targetMotifMatchRegionMatch19 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0160721 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP31463MF_0160712 . ?targetMotifMatchRegionMatch19 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0160720 . ?targetMotifMatchRegionMatchBeginMF_0160720 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0160713 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0160721 edam:has_input signature:MF_01607 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31463MF_0160710, 1, (STRLEN(?templateMotifCigarP31463MF_0160710) - STRLEN(REPLACE(?templateMotifCigarP31463MF_0160710, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP3146311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step122) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31463MF_0160712, 1, (STRLEN(?targetMotifMatchCigarP31463MF_0160712) - STRLEN(REPLACE(?targetMotifMatchCigarP31463MF_0160712, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31463MF_0160712, 1, (STRLEN(?targetMotifMatchCigarP31463MF_0160712) - STRLEN(REPLACE(?targetMotifMatchCigarP31463MF_0160712, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step122), '}'), '')))), '[^-]', ''))) AS ?step223) . BIND(((?step223 + ?targetMotifMatchRegionMatchBeginPositionMF_0160713) - 1) AS ?thisPositionOn8) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31463MF_0160710, 1, (STRLEN(?templateMotifCigarP31463MF_0160710) - STRLEN(REPLACE(?templateMotifCigarP31463MF_0160710, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP3146311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31463MF_0160712, 1, (STRLEN(?targetMotifMatchCigarP31463MF_0160712) - STRLEN(REPLACE(?targetMotifMatchCigarP31463MF_0160712, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31463MF_0160712, 1, (STRLEN(?targetMotifMatchCigarP31463MF_0160712) - STRLEN(REPLACE(?targetMotifMatchCigarP31463MF_0160712, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step124), '}'), '')))), '[^-]', ''))) AS ?step225) . BIND(((?step225 + ?targetMotifMatchRegionMatchBeginPositionMF_0160713) - 1) AS ?thisPositionOn9) . BIND(?this AS ?pfs1t26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn8))) AS ?pfsb6) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn9))) AS ?pfse7) . FILTER (REGEX('VTKAAKR[MI]NVTPSAVSKSLA', SUBSTR(?thisSequenceValue, ?thisPositionOn8, (?thisPositionOn9 - ?thisPositionOn8)))) . BIND(URI(CONCAT(STR(?this), '#MF_01607a5')) AS ?annotation5) . BIND(?this AS ?pfs4) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_01607http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_01607#construct
◀