| http://purl.uniprot.org/unirules/MF_01817#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01817#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_01817#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01817#construct-template-5 |
| http://purl.uniprot.org/unirules/MF_01817#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01817#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_01817#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01817#construct-template-38 |
| http://purl.uniprot.org/unirules/MF_01817#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01817#construct-template-14 |
| http://purl.uniprot.org/unirules/MF_01817#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01817#construct-template-20 |
| http://purl.uniprot.org/unirules/MF_01817#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01817#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_01817#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01817#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_01817#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01817#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01817#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01817#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01817#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01817#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:637049 up:source unirule:MF_01817 .
_:637050 up:source unirule:MF_01817 .
_:637051 up:source unirule:MF_01817 .
_:637052 up:source unirule:MF_01817 .
_:637053 up:source unirule:MF_01817 .
_:637054 up:source unirule:MF_01817 .
_:637055 up:source unirule:MF_01817 .
_:637056 up:source unirule:MF_01817 .
_:637057 up:source unirule:MF_01817 .
_:637058 up:source unirule:MF_01817 .
_:637059 up:source unirule:MF_01817 .
_:637060 up:source unirule:MF_01817 .
_:637061 up:source unirule:MF_01817 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0005737 ,
GO:0006310 ,
GO:0006313 ,
GO:0009037 ,
keyword:229 ,
keyword:233 ,
keyword:238 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Tyrosine recombinase XerD-like' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site.' .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the 'phage' integrase family. XerD-like subfamily." .
?pfs5 up:annotation ?annotation6 .
?annotation6 faldo:begin ?pfsb7 ;
faldo:end ?pfse8 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment "O-(3'-phospho-DNA)-tyrosine intermediate" .
?pfsb7 faldo:position ?thisPositionOn9 ;
rdf:type faldo:ExactPosition .
?pfse8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
_:637062 a rdf:Statement ;
up:attribution _:637049 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:637063 a rdf:Statement ;
up:attribution _:637050 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:637064 a rdf:Statement ;
up:attribution _:637051 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:637065 a rdf:Statement ;
up:attribution _:637052 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:637066 a rdf:Statement ;
up:attribution _:637053 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:637067 a rdf:Statement ;
up:attribution _:637054 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:233 .
_:637068 a rdf:Statement ;
up:attribution _:637055 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:229 .
_:637069 a rdf:Statement ;
up:attribution _:637056 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:637070 a rdf:Statement ;
up:attribution _:637057 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009037 .
_:637071 a rdf:Statement ;
up:attribution _:637058 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006310 .
_:637072 a rdf:Statement ;
up:attribution _:637059 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006313 .
_:637073 a rdf:Statement ;
up:attribution _:637060 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:637074 a rdf:Statement ;
up:source unirule:MF_01817 ;
rdf:subject ?pfs5 ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:637075 a rdf:Statement ;
up:attribution _:637061 ;
rdf:subject ?pfs5 ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01817
#Rule MF_01817 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2023-03-27
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01817 .
?thisOrganism rdfs:subClassOf+ taxon:1300 .
BIND(URI(CONCAT(STR(?this), '#MF_01817a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01817a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01817a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01817a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch15 faldo:location ?templateMotifSequenceMatchRegionQ9CG3216 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9CG3218 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9CG32MF_0181711 .
?templateMotifSequenceMatchRegionQ9CG3216 faldo:begin ?templateMotifSequenceMatchBeginQ9CG3217 .
?templateMotifSequenceMatchBeginQ9CG3217 faldo:position ?templateMotifSequenceMatchBeginPositionQ9CG3212 ;
faldo:reference isoform:Q9CG32-1 .
?templateMotifSequenceProfileAlignmentOperationQ9CG3218 edam:has_input signature:MF_01817 ;
rdf:type edam:operation_0300 .
?targetMotifMatch19 faldo:location ?targetMotifMatchRegionMatch20 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0181722 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9CG32MF_0181713 .
?targetMotifMatchRegionMatch20 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0181721 .
?targetMotifMatchRegionMatchBeginMF_0181721 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0181714 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0181722 edam:has_input signature:MF_01817 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9CG32MF_0181711, 1, (STRLEN(?templateMotifCigarQ9CG32MF_0181711) - STRLEN(REPLACE(?templateMotifCigarQ9CG32MF_0181711, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionQ9CG3212) + 1)), '}'), '')))), '[a-z]', '')) AS ?step123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9CG32MF_0181713, 1, (STRLEN(?targetMotifMatchCigarQ9CG32MF_0181713) - STRLEN(REPLACE(?targetMotifMatchCigarQ9CG32MF_0181713, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9CG32MF_0181713, 1, (STRLEN(?targetMotifMatchCigarQ9CG32MF_0181713) - STRLEN(REPLACE(?targetMotifMatchCigarQ9CG32MF_0181713, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step123), '}'), '')))), '[^-]', ''))) AS ?step224) .
BIND(((?step224 + ?targetMotifMatchRegionMatchBeginPositionMF_0181714) - 1) AS ?thisPositionOn9) .
BIND(?thisPositionOn9 AS ?thisPositionOn10) .
BIND(?this AS ?pfs1t25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn9))) AS ?pfsb7) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfse8) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn9, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01817a6')) AS ?annotation6) .
BIND(?this AS ?pfs5) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01817 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01817#construct |
