| http://purl.uniprot.org/unirules/MF_01832#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:640332 up:source unirule:MF_01832 .
_:640333 up:source unirule:MF_01832 .
_:640334 up:source unirule:MF_01832 .
_:640335 up:source unirule:MF_01832 .
_:640336 up:source unirule:MF_01832 .
_:640337 up:source unirule:MF_01832 .
_:640338 up:source unirule:MF_01832 .
_:640339 up:source unirule:MF_01832 .
_:640340 up:source unirule:MF_01832 .
_:640341 up:source unirule:MF_01832 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005737 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Cysteine desulfuration protein SufE' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'sufE' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Participates in cysteine desulfuration mediated by SufS. Cysteine desulfuration mobilizes sulfur from L-cysteine to yield L-alanine and constitutes an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Functions as a sulfur acceptor for SufS, by mediating the direct transfer of the sulfur atom from the S-sulfanylcysteine of SufS, an intermediate product of cysteine desulfuration process.' .
?annotation3 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; iron-sulfur cluster biosynthesis.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer. Interacts with SufS.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SufE family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Cysteine persulfide intermediate' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
_:640342 a rdf:Statement ;
up:attribution _:640332 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:640343 a rdf:Statement ;
up:attribution _:640333 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:640344 a rdf:Statement ;
up:attribution _:640334 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:640345 a rdf:Statement ;
up:attribution _:640335 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:640346 a rdf:Statement ;
up:attribution _:640336 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:640347 a rdf:Statement ;
up:attribution _:640337 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:640348 a rdf:Statement ;
up:attribution _:640338 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:640349 a rdf:Statement ;
up:attribution _:640339 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:640350 a rdf:Statement ;
up:attribution _:640340 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:640351 a rdf:Statement ;
up:source unirule:MF_01832 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:640352 a rdf:Statement ;
up:attribution _:640341 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01832
#Rule MF_01832 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01832 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01832a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01832a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01832a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01832a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01832a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01832a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP7619419 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7619421 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76194MF_0183214 .
?templateMotifSequenceMatchRegionP7619419 faldo:begin ?templateMotifSequenceMatchBeginP7619420 .
?templateMotifSequenceMatchBeginP7619420 faldo:position ?templateMotifSequenceMatchBeginPositionP7619415 ;
faldo:reference isoform:P76194-1 .
?templateMotifSequenceProfileAlignmentOperationP7619421 edam:has_input signature:MF_01832 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0183225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76194MF_0183216 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0183224 .
?targetMotifMatchRegionMatchBeginMF_0183224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0183217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0183225 edam:has_input signature:MF_01832 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76194MF_0183214, 1, (STRLEN(?templateMotifCigarP76194MF_0183214) - STRLEN(REPLACE(?templateMotifCigarP76194MF_0183214, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP7619415) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76194MF_0183216, 1, (STRLEN(?targetMotifMatchCigarP76194MF_0183216) - STRLEN(REPLACE(?targetMotifMatchCigarP76194MF_0183216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76194MF_0183216, 1, (STRLEN(?targetMotifMatchCigarP76194MF_0183216) - STRLEN(REPLACE(?targetMotifMatchCigarP76194MF_0183216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0183217) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01832a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
}
"xsd:string |
