| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-21 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-30 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-35 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-51 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-39 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-13 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_02026#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02026#construct-template-52 |
| http://purl.uniprot.org/unirules/MF_02026#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_02026#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_02026#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_02026#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_02026#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_02026#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:713931 up:source unirule:MF_02026 .
_:713932 up:source unirule:MF_02026 .
_:713933 up:source unirule:MF_02026 .
_:713934 up:source unirule:MF_02026 .
_:713935 up:source unirule:MF_02026 .
_:713936 up:source unirule:MF_02026 .
_:713937 up:source unirule:MF_02026 .
_:713938 up:source unirule:MF_02026 .
_:713939 up:source unirule:MF_02026 .
_:713940 up:source unirule:MF_02026 .
_:713941 up:source unirule:MF_02026 .
_:713942 up:source unirule:MF_02026 .
_:713943 up:source unirule:MF_02026 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0009246 ,
GO:0019180 ,
GO:0030170 ,
keyword:663 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.6.1.59' ;
up:fullName 'dTDP-4-amino-4,6-dideoxygalactose transaminase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'wecE' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D-galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D-Glc4O) and L-glutamate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Bacterial outer membrane biogenesis; enterobacterial common antigen biosynthesis.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DegT/DnrJ/EryC1 family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
_:713944 a rdf:Statement ;
up:attribution _:713931 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:713945 a rdf:Statement ;
up:attribution _:713932 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:713946 a rdf:Statement ;
up:attribution _:713933 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:713947 a rdf:Statement ;
up:attribution _:713934 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:713948 a rdf:Statement ;
up:attribution _:713935 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:713949 a rdf:Statement ;
up:attribution _:713936 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:713950 a rdf:Statement ;
up:attribution _:713937 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:713951 a rdf:Statement ;
up:attribution _:713938 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:713952 a rdf:Statement ;
up:attribution _:713939 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:713953 a rdf:Statement ;
up:attribution _:713940 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019180 .
_:713954 a rdf:Statement ;
up:attribution _:713941 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030170 .
_:713955 a rdf:Statement ;
up:attribution _:713942 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009246 .
_:713956 a rdf:Statement ;
up:source unirule:MF_02026 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:713957 a rdf:Statement ;
up:attribution _:713943 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02026
#Rule MF_02026 Created by:? on:2015-04-21 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02026 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_02026a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02026a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02026a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02026a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02026a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02026a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP2783319 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2783321 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27833MF_0202614 .
?templateMotifSequenceMatchRegionP2783319 faldo:begin ?templateMotifSequenceMatchBeginP2783320 .
?templateMotifSequenceMatchBeginP2783320 faldo:position ?templateMotifSequenceMatchBeginPositionP2783315 ;
faldo:reference isoform:P27833-1 .
?templateMotifSequenceProfileAlignmentOperationP2783321 edam:has_input signature:MF_02026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0202625 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27833MF_0202616 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0202624 .
?targetMotifMatchRegionMatchBeginMF_0202624 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0202617 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0202625 edam:has_input signature:MF_02026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27833MF_0202614, 1, (STRLEN(?templateMotifCigarP27833MF_0202614) - STRLEN(REPLACE(?templateMotifCigarP27833MF_0202614, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP2783315) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27833MF_0202616, 1, (STRLEN(?targetMotifMatchCigarP27833MF_0202616) - STRLEN(REPLACE(?targetMotifMatchCigarP27833MF_0202616, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27833MF_0202616, 1, (STRLEN(?targetMotifMatchCigarP27833MF_0202616) - STRLEN(REPLACE(?targetMotifMatchCigarP27833MF_0202616, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0202617) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02026a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_02026 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_02026#construct |
