| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-17 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-4 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-52 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-27 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-37 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-13 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-32 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_02052#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02052#construct-template-51 |
| http://purl.uniprot.org/unirules/MF_02052#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_02052#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_02052#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_02052#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_02052#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_02052#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:725403 up:source unirule:MF_02052 .
_:725404 up:source unirule:MF_02052 .
_:725405 up:source unirule:MF_02052 .
_:725406 up:source unirule:MF_02052 .
_:725407 up:source unirule:MF_02052 .
_:725408 up:source unirule:MF_02052 .
_:725409 up:source unirule:MF_02052 .
_:725410 up:source unirule:MF_02052 .
_:725411 up:source unirule:MF_02052 .
_:725412 up:source unirule:MF_02052 .
_:725413 up:source unirule:MF_02052 .
_:725414 up:source unirule:MF_02052 .
_:725415 up:source unirule:MF_02052 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0016747 ,
keyword:704 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.245' ;
up:fullName '3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'lsrF' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the transfer of an acetyl moiety from 3-hydroxy-5-phosphonooxypentane-2,4-dione to CoA to form glycerone phosphate and acetyl-CoA.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homodecamer.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DeoC/FbaB aldolase family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with substrate' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
_:725416 a rdf:Statement ;
up:attribution _:725403 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:725417 a rdf:Statement ;
up:attribution _:725404 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:725418 a rdf:Statement ;
up:attribution _:725405 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:725419 a rdf:Statement ;
up:attribution _:725406 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:725420 a rdf:Statement ;
up:attribution _:725407 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:725421 a rdf:Statement ;
up:attribution _:725408 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:725422 a rdf:Statement ;
up:attribution _:725409 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:725423 a rdf:Statement ;
up:attribution _:725410 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:725424 a rdf:Statement ;
up:attribution _:725411 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:704 .
_:725425 a rdf:Statement ;
up:attribution _:725412 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:725426 a rdf:Statement ;
up:attribution _:725413 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016747 .
_:725427 a rdf:Statement ;
up:attribution _:725414 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:725428 a rdf:Statement ;
up:source unirule:MF_02052 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:725429 a rdf:Statement ;
up:attribution _:725415 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02052
#Rule MF_02052 Created by:? on:2016-01-07 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02052 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_02052a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02052a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02052a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02052a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02052a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02052a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP7614320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7614322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76143MF_0205215 .
?templateMotifSequenceMatchRegionP7614320 faldo:begin ?templateMotifSequenceMatchBeginP7614321 .
?templateMotifSequenceMatchBeginP7614321 faldo:position ?templateMotifSequenceMatchBeginPositionP7614316 ;
faldo:reference isoform:P76143-1 .
?templateMotifSequenceProfileAlignmentOperationP7614322 edam:has_input signature:MF_02052 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205226 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76143MF_0205217 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205225 .
?targetMotifMatchRegionMatchBeginMF_0205225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205218 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0205226 edam:has_input signature:MF_02052 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76143MF_0205215, 1, (STRLEN(?templateMotifCigarP76143MF_0205215) - STRLEN(REPLACE(?templateMotifCigarP76143MF_0205215, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP7614316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76143MF_0205217, 1, (STRLEN(?targetMotifMatchCigarP76143MF_0205217) - STRLEN(REPLACE(?targetMotifMatchCigarP76143MF_0205217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76143MF_0205217, 1, (STRLEN(?targetMotifMatchCigarP76143MF_0205217) - STRLEN(REPLACE(?targetMotifMatchCigarP76143MF_0205217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0205218) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02052a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_02052 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_02052#construct |
