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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-31 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-30 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-33 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-32 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_02096#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02096#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_02096#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_02096#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_02096#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_02096#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_02096#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_02096#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:744233 up:source unirule:MF_02096 . _:744234 up:source unirule:MF_02096 . _:744235 up:source unirule:MF_02096 . _:744236 up:source unirule:MF_02096 . _:744237 up:source unirule:MF_02096 . _:744238 up:source unirule:MF_02096 . _:744239 up:source unirule:MF_02096 . _:744240 up:source unirule:MF_02096 . _:744241 up:source unirule:MF_02096 . _:744242 up:source unirule:MF_02096 . _:744243 up:source unirule:MF_02096 . _:744244 up:source unirule:MF_02096 . ?this up:annotation ?annotation1 , ?annotation2 ; up:classifiedWith GO:0006281 , keyword:227 , keyword:234 ; up:recommendedName ?name0 . ?name0 up:fullName 'DNA repair protein' ; rdf:type up:Structured_Name . ?annotation1 a up:Function_Annotation ; rdfs:comment 'Involved in DNA damage repair.' . ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Nre family.' . ?case4 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 , keyword:863 . ?pfs5 up:annotation ?annotation6 . ?annotation6 faldo:begin ?pfsb7 ; faldo:end ?pfse8 ; rdf:type up:Zinc_Finger_Annotation ; rdfs:comment 'C4-type' . ?pfsb7 faldo:position ?thisPositionOn9 ; rdf:type faldo:ExactPosition . ?pfse8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; rdf:type up:Motif_Annotation ; rdfs:comment 'PIP motif' . ?pfsb13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . _:744245 a rdf:Statement ; up:attribution _:744233 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:744246 a rdf:Statement ; up:attribution _:744234 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:744247 a rdf:Statement ; up:attribution _:744235 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:744248 a rdf:Statement ; up:attribution _:744236 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:744249 a rdf:Statement ; up:attribution _:744237 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:744250 a rdf:Statement ; up:attribution _:744238 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006281 . _:744251 a rdf:Statement ; up:attribution _:744239 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:744252 a rdf:Statement ; up:attribution _:744240 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:744253 a rdf:Statement ; up:attribution _:744241 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:863 . _:744254 a rdf:Statement ; up:attribution _:744242 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:744255 a rdf:Statement ; up:source unirule:MF_02096 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:744256 a rdf:Statement ; up:attribution _:744243 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:744257 a rdf:Statement ; up:source unirule:MF_02096 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:744258 a rdf:Statement ; up:attribution _:744244 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02096 #Rule MF_02096 Created by:? on:2017-10-23 Modified by:Edouard de Castro on:2019-11-20 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02096 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_02096a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02096a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_02096a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionO2868222 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2868224 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28682MF_0209617 . ?templateMotifSequenceMatchRegionO2868222 faldo:begin ?templateMotifSequenceMatchBeginO2868223 . ?templateMotifSequenceMatchBeginO2868223 faldo:position ?templateMotifSequenceMatchBeginPositionO2868218 ; faldo:reference isoform:O28682-1 . ?templateMotifSequenceProfileAlignmentOperationO2868224 edam:has_input signature:MF_02096 ; rdf:type edam:operation_0300 . ?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0209628 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28682MF_0209619 . ?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0209627 . ?targetMotifMatchRegionMatchBeginMF_0209627 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209620 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0209628 edam:has_input signature:MF_02096 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagzinc) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28682MF_0209617, 1, (STRLEN(?templateMotifCigarO28682MF_0209617) - STRLEN(REPLACE(?templateMotifCigarO28682MF_0209617, CONCAT('^(?:-*[^-]){', STR(((3 - ?templateMotifSequenceMatchBeginPositionO2868218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28682MF_0209619, 1, (STRLEN(?targetMotifMatchCigarO28682MF_0209619) - STRLEN(REPLACE(?targetMotifMatchCigarO28682MF_0209619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28682MF_0209619, 1, (STRLEN(?targetMotifMatchCigarO28682MF_0209619) - STRLEN(REPLACE(?targetMotifMatchCigarO28682MF_0209619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) . BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0209620) - 1) AS ?thisPositionOn9) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28682MF_0209617, 1, (STRLEN(?templateMotifCigarO28682MF_0209617) - STRLEN(REPLACE(?templateMotifCigarO28682MF_0209617, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionO2868218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28682MF_0209619, 1, (STRLEN(?targetMotifMatchCigarO28682MF_0209619) - STRLEN(REPLACE(?targetMotifMatchCigarO28682MF_0209619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28682MF_0209619, 1, (STRLEN(?targetMotifMatchCigarO28682MF_0209619) - STRLEN(REPLACE(?targetMotifMatchCigarO28682MF_0209619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) . BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0209620) - 1) AS ?thisPositionOn10) . BIND(?this AS ?pfs1t33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn9))) AS ?pfsb7) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfse8) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)C[ARNDCQEGHILKMFPSTWYVBZJUOX]{5,6)C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2,4)C', SUBSTR(?thisSequenceValue, ?thisPositionOn9, (?thisPositionOn10 - ?thisPositionOn9)))) . BIND(URI(CONCAT(STR(?this), '#MF_02096a6')) AS ?annotation6) . BIND(?this AS ?pfs5) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch38 faldo:location ?templateMotifSequenceMatchRegionO2868239 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2868241 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28682MF_0209634 . ?templateMotifSequenceMatchRegionO2868239 faldo:begin ?templateMotifSequenceMatchBeginO2868240 . ?templateMotifSequenceMatchBeginO2868240 faldo:position ?templateMotifSequenceMatchBeginPositionO2868235 ; faldo:reference isoform:O28682-1 . ?templateMotifSequenceProfileAlignmentOperationO2868241 edam:has_input signature:MF_02096 ; rdf:type edam:operation_0300 . ?targetMotifMatch42 faldo:location ?targetMotifMatchRegionMatch43 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0209645 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28682MF_0209636 . ?targetMotifMatchRegionMatch43 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0209644 . ?targetMotifMatchRegionMatchBeginMF_0209644 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209637 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0209645 edam:has_input signature:MF_02096 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagPIP) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28682MF_0209634, 1, (STRLEN(?templateMotifCigarO28682MF_0209634) - STRLEN(REPLACE(?templateMotifCigarO28682MF_0209634, CONCAT('^(?:-*[^-]){', STR(((384 - ?templateMotifSequenceMatchBeginPositionO2868235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28682MF_0209636, 1, (STRLEN(?targetMotifMatchCigarO28682MF_0209636) - STRLEN(REPLACE(?targetMotifMatchCigarO28682MF_0209636, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28682MF_0209636, 1, (STRLEN(?targetMotifMatchCigarO28682MF_0209636) - STRLEN(REPLACE(?targetMotifMatchCigarO28682MF_0209636, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) . BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0209637) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28682MF_0209634, 1, (STRLEN(?templateMotifCigarO28682MF_0209634) - STRLEN(REPLACE(?templateMotifCigarO28682MF_0209634, CONCAT('^(?:-*[^-]){', STR(((391 - ?templateMotifSequenceMatchBeginPositionO2868235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28682MF_0209636, 1, (STRLEN(?targetMotifMatchCigarO28682MF_0209636) - STRLEN(REPLACE(?targetMotifMatchCigarO28682MF_0209636, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28682MF_0209636, 1, (STRLEN(?targetMotifMatchCigarO28682MF_0209636) - STRLEN(REPLACE(?targetMotifMatchCigarO28682MF_0209636, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) . BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0209637) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs2t50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) . FILTER (REGEX('Q[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][LIM][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][FYW][FYWVMLI]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) . BIND(URI(CONCAT(STR(?this), '#MF_02096a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag51) . } BIND(IF(BOUND(?tagPIP), ?caseWithTag51, ?UNBOUND_VARIABLE) AS ?case3) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag52) . } BIND(IF(BOUND(?tagzinc), ?caseWithTag52, ?UNBOUND_VARIABLE) AS ?case4) . } "xsd:string |
| http://purl.uniprot.org/unirules/MF_02096 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_02096#construct |