| http://purl.uniprot.org/unirules/MF_03007#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03007#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_03007#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03007#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_03007#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03007#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_03007#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03007#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_03007#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03007#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_03007#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03007#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_03007#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03007#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_03007#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_03007#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_03007#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_03007#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_03007#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_03007#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:783094 up:source unirule:MF_03007 .
_:783095 up:source unirule:MF_03007 .
_:783096 up:source unirule:MF_03007 .
_:783097 up:source unirule:MF_03007 .
_:783098 up:source unirule:MF_03007 .
_:783099 up:source unirule:MF_03007 .
_:783100 up:source unirule:MF_03007 .
_:783101 up:source unirule:MF_03007 .
_:783102 up:source unirule:MF_03007 .
_:783103 up:source unirule:MF_03007 .
_:783104 up:source unirule:MF_03007 .
_:783105 up:source unirule:MF_03007 .
_:783106 up:source unirule:MF_03007 .
_:783107 up:source unirule:MF_03007 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0001732 ,
GO:0002183 ,
GO:0003743 ,
GO:0005737 ,
GO:0005852 ,
GO:0016282 ,
GO:0033290 ,
keyword:396 ,
keyword:648 ,
keyword:963 .
?annotation0 a up:Subcellular_Location_Annotation .
?annotation0li1 up:cellularComponent .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the eIF-3 subunit H family.' .
?case3 up:classifiedWith keyword:597 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
_:783108 a rdf:Statement ;
up:attribution _:783094 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:783109 a rdf:Statement ;
up:attribution _:783095 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:783110 a rdf:Statement ;
up:attribution _:783096 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:783111 a rdf:Statement ;
up:attribution _:783097 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:396 .
_:783112 a rdf:Statement ;
up:attribution _:783098 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:783113 a rdf:Statement ;
up:attribution _:783099 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003743 .
_:783114 a rdf:Statement ;
up:attribution _:783100 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001732 .
_:783115 a rdf:Statement ;
up:attribution _:783101 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002183 .
_:783116 a rdf:Statement ;
up:attribution _:783102 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:783117 a rdf:Statement ;
up:attribution _:783103 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005852 .
_:783118 a rdf:Statement ;
up:attribution _:783104 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016282 .
_:783119 a rdf:Statement ;
up:attribution _:783105 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033290 .
_:783120 a rdf:Statement ;
up:attribution _:783106 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:783121 a rdf:Statement ;
up:source unirule:MF_03007 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:783122 a rdf:Statement ;
up:attribution _:783107 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03007
#Rule MF_03007 Created by:? on:2009-01-29 Modified by:Edouard de Castro on:2019-11-20
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03007 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03007a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03007a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch22 faldo:location ?templateMotifSequenceMatchRegionO1537223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO1537225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15372MF_0300718 .
?templateMotifSequenceMatchRegionO1537223 faldo:begin ?templateMotifSequenceMatchBeginO1537224 .
?templateMotifSequenceMatchBeginO1537224 faldo:position ?templateMotifSequenceMatchBeginPositionO1537219 ;
faldo:reference isoform:O15372-1 .
?templateMotifSequenceProfileAlignmentOperationO1537225 edam:has_input signature:MF_03007 ;
rdf:type edam:operation_0300 .
?targetMotifMatch26 faldo:location ?targetMotifMatchRegionMatch27 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300729 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15372MF_0300720 .
?targetMotifMatchRegionMatch27 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300728 .
?targetMotifMatchRegionMatchBeginMF_0300728 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300721 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0300729 edam:has_input signature:MF_03007 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagphospho) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15372MF_0300718, 1, (STRLEN(?templateMotifCigarO15372MF_0300718) - STRLEN(REPLACE(?templateMotifCigarO15372MF_0300718, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionO1537219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15372MF_0300720, 1, (STRLEN(?targetMotifMatchCigarO15372MF_0300720) - STRLEN(REPLACE(?targetMotifMatchCigarO15372MF_0300720, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15372MF_0300720, 1, (STRLEN(?targetMotifMatchCigarO15372MF_0300720) - STRLEN(REPLACE(?targetMotifMatchCigarO15372MF_0300720, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) .
BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0300721) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03007a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag33) .
}
BIND(IF(BOUND(?tagphospho), ?caseWithTag33, ?UNBOUND_VARIABLE) AS ?case3) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7214 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon34 {taxon:7214 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon34 .
})) .
BIND(?this AS ?case11) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_03007 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_03007#construct |
