| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-30 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-17 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-13 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-11 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-64 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_03011#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03011#construct-template-66 |
| http://purl.uniprot.org/unirules/MF_03011#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_03011#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_03011#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_03011#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_03011#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_03011#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:784782 up:source unirule:MF_03011 .
_:784783 up:source unirule:MF_03011 .
_:784784 up:source unirule:MF_03011 .
_:784785 up:source unirule:MF_03011 .
_:784786 up:source unirule:MF_03011 .
_:784787 up:source unirule:MF_03011 .
_:784788 up:source unirule:MF_03011 .
_:784789 up:source unirule:MF_03011 .
_:784790 up:source unirule:MF_03011 .
_:784791 up:source unirule:MF_03011 .
_:784792 up:source unirule:MF_03011 .
_:784793 up:source unirule:MF_03011 .
_:784794 up:source unirule:MF_03011 .
_:784795 up:source unirule:MF_03011 .
_:784796 up:source unirule:MF_03011 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0001732 ,
GO:0002183 ,
GO:0003743 ,
GO:0005737 ,
GO:0005852 ,
GO:0016282 ,
GO:0033290 ,
keyword:396 ,
keyword:648 ,
keyword:963 .
?annotation0 a up:Subcellular_Location_Annotation .
?annotation0li1 up:cellularComponent .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the eIF-3 subunit L family.' .
?case3 up:classifiedWith keyword:7 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylserine' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
_:784797 a rdf:Statement ;
up:attribution _:784782 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:784798 a rdf:Statement ;
up:attribution _:784783 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:784799 a rdf:Statement ;
up:attribution _:784784 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:784800 a rdf:Statement ;
up:attribution _:784785 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:396 .
_:784801 a rdf:Statement ;
up:attribution _:784786 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:784802 a rdf:Statement ;
up:attribution _:784787 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003743 .
_:784803 a rdf:Statement ;
up:attribution _:784788 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001732 .
_:784804 a rdf:Statement ;
up:attribution _:784789 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002183 .
_:784805 a rdf:Statement ;
up:attribution _:784790 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:784806 a rdf:Statement ;
up:attribution _:784791 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005852 .
_:784807 a rdf:Statement ;
up:attribution _:784792 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016282 .
_:784808 a rdf:Statement ;
up:attribution _:784793 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033290 .
_:784809 a rdf:Statement ;
up:attribution _:784794 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:784810 a rdf:Statement ;
up:source unirule:MF_03011 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:784811 a rdf:Statement ;
up:attribution _:784795 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:784812 a rdf:Statement ;
up:source unirule:MF_03011 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:784813 a rdf:Statement ;
up:attribution _:784796 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03011
#Rule MF_03011 Created by:? on:2009-01-30 Modified by:Edouard de Castro on:2019-11-20
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03011 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03011a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03011a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch28 faldo:location ?templateMotifSequenceMatchRegionQ9Y26229 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y26231 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y262MF_0301124 .
?templateMotifSequenceMatchRegionQ9Y26229 faldo:begin ?templateMotifSequenceMatchBeginQ9Y26230 .
?templateMotifSequenceMatchBeginQ9Y26230 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y26225 ;
faldo:reference isoform:Q9Y262-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y26231 edam:has_input signature:MF_03011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch32 faldo:location ?targetMotifMatchRegionMatch33 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0301135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y262MF_0301126 .
?targetMotifMatchRegionMatch33 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0301134 .
?targetMotifMatchRegionMatchBeginMF_0301134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0301127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0301135 edam:has_input signature:MF_03011 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacetyl) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y262MF_0301124, 1, (STRLEN(?templateMotifCigarQ9Y262MF_0301124) - STRLEN(REPLACE(?templateMotifCigarQ9Y262MF_0301124, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionQ9Y26225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y262MF_0301126, 1, (STRLEN(?targetMotifMatchCigarQ9Y262MF_0301126) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y262MF_0301126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y262MF_0301126, 1, (STRLEN(?targetMotifMatchCigarQ9Y262MF_0301126) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y262MF_0301126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), '')))), '[^-]', ''))) AS ?step237) .
BIND(((?step237 + ?targetMotifMatchRegionMatchBeginPositionMF_0301127) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03011a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionQ9Y26244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y26246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y262MF_0301139 .
?templateMotifSequenceMatchRegionQ9Y26244 faldo:begin ?templateMotifSequenceMatchBeginQ9Y26245 .
?templateMotifSequenceMatchBeginQ9Y26245 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y26240 ;
faldo:reference isoform:Q9Y262-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y26246 edam:has_input signature:MF_03011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0301150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y262MF_0301141 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0301149 .
?targetMotifMatchRegionMatchBeginMF_0301149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0301142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0301150 edam:has_input signature:MF_03011 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y262MF_0301139, 1, (STRLEN(?templateMotifCigarQ9Y262MF_0301139) - STRLEN(REPLACE(?templateMotifCigarQ9Y262MF_0301139, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionQ9Y26240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y262MF_0301141, 1, (STRLEN(?targetMotifMatchCigarQ9Y262MF_0301141) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y262MF_0301141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y262MF_0301141, 1, (STRLEN(?targetMotifMatchCigarQ9Y262MF_0301141) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y262MF_0301141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0301142) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs2t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_03011a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag54) .
}
BIND(IF(BOUND(?tagacetyl), ?caseWithTag54, ?UNBOUND_VARIABLE) AS ?case3) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7214 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon55 {taxon:7214 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon55 .
})) .
BIND(?this AS ?case11) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_03011 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_03011#construct |
