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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-33 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-27 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-5 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-31 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-3 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-51 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_03048#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03048#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_03048#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_03048#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_03048#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_03048#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_03048#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_03048#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:801959 up:source unirule:MF_03048 . _:801960 up:source unirule:MF_03048 . _:801961 up:source unirule:MF_03048 . _:801962 up:source unirule:MF_03048 . _:801963 up:source unirule:MF_03048 . _:801964 up:source unirule:MF_03048 . _:801965 up:source unirule:MF_03048 . _:801966 up:source unirule:MF_03048 . _:801967 up:source unirule:MF_03048 . _:801968 up:source unirule:MF_03048 . _:801969 up:source unirule:MF_03048 . _:801970 up:source unirule:MF_03048 . _:801971 up:source unirule:MF_03048 . _:801972 up:source unirule:MF_03048 . ?this up:annotation ?annotation0 , ?annotation1 ; up:classifiedWith GO:0002098 , GO:0005829 , GO:0032447 , GO:0034227 , keyword:1017 , keyword:819 , keyword:833 , keyword:963 . ?annotation0 a up:Pathway_Annotation ; rdfs:comment 'tRNA modification; 5-methoxycarbonylmethyl-2-thiouridine-tRNA biosynthesis.' . ?annotation1 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the URM1 family.' . ?case5 up:classifiedWith GO:0005634 , keyword:539 . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment '1-thioglycine' . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Cross-link_Annotation ; rdfs:comment 'Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . _:801973 a rdf:Statement ; up:attribution _:801959 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:801974 a rdf:Statement ; up:attribution _:801960 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:801975 a rdf:Statement ; up:attribution _:801961 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:801976 a rdf:Statement ; up:attribution _:801962 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1017 . _:801977 a rdf:Statement ; up:attribution _:801963 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:801978 a rdf:Statement ; up:attribution _:801964 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:833 . _:801979 a rdf:Statement ; up:attribution _:801965 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005829 . _:801980 a rdf:Statement ; up:attribution _:801966 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002098 . _:801981 a rdf:Statement ; up:attribution _:801967 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0032447 . _:801982 a rdf:Statement ; up:attribution _:801968 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0034227 . _:801983 a rdf:Statement ; up:attribution _:801969 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:801984 a rdf:Statement ; up:attribution _:801970 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005634 . _:801985 a rdf:Statement ; up:source unirule:MF_03048 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:801986 a rdf:Statement ; up:attribution _:801971 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:801987 a rdf:Statement ; up:source unirule:MF_03048 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:801988 a rdf:Statement ; up:attribution _:801972 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03048 #Rule MF_03048 Created by:? on:2013-08-19 Modified by:Edouard de Castro on:2019-11-20 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03048 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03048a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03048a1')) AS ?annotation1) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionP4055431 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4055433 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40554MF_0304826 . ?templateMotifSequenceMatchRegionP4055431 faldo:begin ?templateMotifSequenceMatchBeginP4055432 . ?templateMotifSequenceMatchBeginP4055432 faldo:position ?templateMotifSequenceMatchBeginPositionP4055427 ; faldo:reference isoform:P40554-1 . ?templateMotifSequenceProfileAlignmentOperationP4055433 edam:has_input signature:MF_03048 ; rdf:type edam:operation_0300 . ?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0304837 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40554MF_0304828 . ?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0304836 . ?targetMotifMatchRegionMatchBeginMF_0304836 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0304829 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0304837 edam:has_input signature:MF_03048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40554MF_0304826, 1, (STRLEN(?templateMotifCigarP40554MF_0304826) - STRLEN(REPLACE(?templateMotifCigarP40554MF_0304826, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP4055427) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40554MF_0304828, 1, (STRLEN(?targetMotifMatchCigarP40554MF_0304828) - STRLEN(REPLACE(?targetMotifMatchCigarP40554MF_0304828, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40554MF_0304828, 1, (STRLEN(?targetMotifMatchCigarP40554MF_0304828) - STRLEN(REPLACE(?targetMotifMatchCigarP40554MF_0304828, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) . BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0304829) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_03048a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP4055446 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4055448 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40554MF_0304841 . ?templateMotifSequenceMatchRegionP4055446 faldo:begin ?templateMotifSequenceMatchBeginP4055447 . ?templateMotifSequenceMatchBeginP4055447 faldo:position ?templateMotifSequenceMatchBeginPositionP4055442 ; faldo:reference isoform:P40554-1 . ?templateMotifSequenceProfileAlignmentOperationP4055448 edam:has_input signature:MF_03048 ; rdf:type edam:operation_0300 . ?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0304852 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40554MF_0304843 . ?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0304851 . ?targetMotifMatchRegionMatchBeginMF_0304851 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0304844 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0304852 edam:has_input signature:MF_03048 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40554MF_0304841, 1, (STRLEN(?templateMotifCigarP40554MF_0304841) - STRLEN(REPLACE(?templateMotifCigarP40554MF_0304841, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP4055442) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40554MF_0304843, 1, (STRLEN(?targetMotifMatchCigarP40554MF_0304843) - STRLEN(REPLACE(?targetMotifMatchCigarP40554MF_0304843, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40554MF_0304843, 1, (STRLEN(?targetMotifMatchCigarP40554MF_0304843) - STRLEN(REPLACE(?targetMotifMatchCigarP40554MF_0304843, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) . BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0304844) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_03048a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case2) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?case3) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(?this AS ?case5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7214 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:6237 . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:4930 . })) . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . VALUES ?supertaxon56 {taxon:4751 taxon:7742} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon56 . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon57 {taxon:7742 taxon:4751} ?thisOrganism rdfs:subClassOf+ ?supertaxon57 . })) . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon58 {taxon:4751 taxon:7742} ?thisOrganism rdfs:subClassOf+ ?supertaxon58 . })) . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:40674 . })) . } UNION { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . } BIND(?this AS ?case12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon59 {taxon:7742 taxon:33090 taxon:4751} ?thisOrganism rdfs:subClassOf+ ?supertaxon59 . })) . BIND(?this AS ?case13) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_03048 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_03048#construct |