| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-24 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-3 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-26 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-1 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-19 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-64 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-39 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-5 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-67 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-63 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_03166#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03166#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_03166#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_03166#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_03166#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_03166#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_03166#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_03166#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:854825 up:source unirule:MF_03166 .
_:854826 up:source unirule:MF_03166 .
_:854827 up:source unirule:MF_03166 .
_:854828 up:source unirule:MF_03166 .
_:854829 up:source unirule:MF_03166 .
_:854830 up:source unirule:MF_03166 .
_:854831 up:source unirule:MF_03166 .
_:854832 up:source unirule:MF_03166 .
_:854833 up:source unirule:MF_03166 .
_:854834 up:source unirule:MF_03166 .
_:854835 up:source unirule:MF_03166 .
_:854836 up:source unirule:MF_03166 .
_:854837 up:source unirule:MF_03166 .
_:854838 up:source unirule:MF_03166 .
_:854839 up:source unirule:MF_03166 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation7 ;
up:classifiedWith GO:0004844 ,
GO:0005634 ,
GO:0005739 ,
GO:0006284 ,
keyword:227 ,
keyword:234 ,
keyword:378 ,
keyword:496 ,
keyword:539 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.2.2.27' ;
up:fullName 'Uracil-DNA glycosylase' ;
up:shortName 'UDG' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:enzymeClass .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation4li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
_:854840 a rdf:Statement ;
up:attribution _:854825 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:854841 a rdf:Statement ;
up:attribution _:854826 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:854842 a rdf:Statement ;
up:attribution _:854827 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:854843 a rdf:Statement ;
up:attribution _:854828 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:854844 a rdf:Statement ;
up:attribution _:854829 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:854845 a rdf:Statement ;
up:attribution _:854830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:854846 a rdf:Statement ;
up:attribution _:854831 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:854847 a rdf:Statement ;
up:attribution _:854832 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:854848 a rdf:Statement ;
up:attribution _:854833 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:854849 a rdf:Statement ;
up:attribution _:854834 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:854850 a rdf:Statement ;
up:attribution _:854835 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004844 .
_:854851 a rdf:Statement ;
up:attribution _:854836 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006284 .
_:854852 a rdf:Statement ;
up:attribution _:854837 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:854853 a rdf:Statement ;
up:attribution _:854838 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005739 .
_:854854 a rdf:Statement ;
up:source unirule:MF_03166 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:854855 a rdf:Statement ;
up:attribution _:854839 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03166
#Rule MF_03166 Created by:? on:2013-02-20 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00148 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03166a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03166a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03166a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03166a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03166a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionP1229522 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1229524 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12295MF_0014817 .
?templateMotifSequenceMatchRegionP1229522 faldo:begin ?templateMotifSequenceMatchBeginP1229523 .
?templateMotifSequenceMatchBeginP1229523 faldo:position ?templateMotifSequenceMatchBeginPositionP1229518 ;
faldo:reference isoform:P12295-1 .
?templateMotifSequenceProfileAlignmentOperationP1229524 edam:has_input signature:MF_00148 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0014828 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12295MF_0014819 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0014827 .
?targetMotifMatchRegionMatchBeginMF_0014827 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0014820 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0014828 edam:has_input signature:MF_00148 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12295MF_0014817, 1, (STRLEN(?templateMotifCigarP12295MF_0014817) - STRLEN(REPLACE(?templateMotifCigarP12295MF_0014817, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP1229518) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12295MF_0014819, 1, (STRLEN(?targetMotifMatchCigarP12295MF_0014819) - STRLEN(REPLACE(?targetMotifMatchCigarP12295MF_0014819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12295MF_0014819, 1, (STRLEN(?targetMotifMatchCigarP12295MF_0014819) - STRLEN(REPLACE(?targetMotifMatchCigarP12295MF_0014819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0014820) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03166a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_03166 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_03166#construct |
