| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-20 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-2 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-30 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-4 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-52 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-6 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-31 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_04103#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04103#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_04103#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_04103#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_04103#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_04103#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_04103#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_04103#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:953924 up:source unirule:MF_04103 .
_:953925 up:source unirule:MF_04103 .
_:953926 up:source unirule:MF_04103 .
_:953927 up:source unirule:MF_04103 .
_:953928 up:source unirule:MF_04103 .
_:953929 up:source unirule:MF_04103 .
_:953930 up:source unirule:MF_04103 .
_:953931 up:source unirule:MF_04103 .
_:953932 up:source unirule:MF_04103 .
_:953933 up:source unirule:MF_04103 .
_:953934 up:source unirule:MF_04103 .
_:953935 up:source unirule:MF_04103 .
_:953936 up:source unirule:MF_04103 .
_:953937 up:source unirule:MF_04103 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0098025 ,
keyword:1188 ,
keyword:1226 ,
keyword:1227 ,
keyword:1245 ,
keyword:426 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Baseplate wedge protein gp7' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Baseplate protein. Involved in the tail assembly.' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Binds to gp10 homotrimer; disulfide-linked. Heteromultimer with gp10; a gp10 molecule is disulfide-linked to gp7 and the other two remaining gp10 molecules form a disulfide bond.' .
?annotation3 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Present in the baseplate' .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the T4likevirus baseplate wedge protein gp7 family.' .
?case6 up:classifiedWith keyword:1015 .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Interchain (with GP10)' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
_:953938 a rdf:Statement ;
up:attribution _:953924 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:953939 a rdf:Statement ;
up:attribution _:953925 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:953940 a rdf:Statement ;
up:attribution _:953926 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:953941 a rdf:Statement ;
up:attribution _:953927 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:953942 a rdf:Statement ;
up:attribution _:953928 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:953943 a rdf:Statement ;
up:attribution _:953929 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:426 .
_:953944 a rdf:Statement ;
up:attribution _:953930 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1226 .
_:953945 a rdf:Statement ;
up:attribution _:953931 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1245 .
_:953946 a rdf:Statement ;
up:attribution _:953932 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1227 .
_:953947 a rdf:Statement ;
up:attribution _:953933 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:953948 a rdf:Statement ;
up:attribution _:953934 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1188 .
_:953949 a rdf:Statement ;
up:attribution _:953935 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0098025 .
_:953950 a rdf:Statement ;
up:attribution _:953936 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:953951 a rdf:Statement ;
up:source unirule:MF_04103 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:953952 a rdf:Statement ;
up:attribution _:953937 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04103
#Rule MF_04103 Created by:? on:2016-10-18 Modified by:Chantal Hulo on:2022-08-23
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04103 .
?thisOrganism rdfs:subClassOf+ taxon:2731619 .
BIND(URI(CONCAT(STR(?this), '#MF_04103a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04103a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04103a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04103a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04103a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch17 faldo:location ?templateMotifSequenceMatchRegionP1906118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1906120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19061MF_0410313 .
?templateMotifSequenceMatchRegionP1906118 faldo:begin ?templateMotifSequenceMatchBeginP1906119 .
?templateMotifSequenceMatchBeginP1906119 faldo:position ?templateMotifSequenceMatchBeginPositionP1906114 ;
faldo:reference isoform:P19061-1 .
?templateMotifSequenceProfileAlignmentOperationP1906120 edam:has_input signature:MF_04103 ;
rdf:type edam:operation_0300 .
?targetMotifMatch21 faldo:location ?targetMotifMatchRegionMatch22 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0410324 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19061MF_0410315 .
?targetMotifMatchRegionMatch22 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0410323 .
?targetMotifMatchRegionMatchBeginMF_0410323 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0410316 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0410324 edam:has_input signature:MF_04103 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulf) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19061MF_0410313, 1, (STRLEN(?templateMotifCigarP19061MF_0410313) - STRLEN(REPLACE(?templateMotifCigarP19061MF_0410313, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionP1906114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19061MF_0410315, 1, (STRLEN(?targetMotifMatchCigarP19061MF_0410315) - STRLEN(REPLACE(?targetMotifMatchCigarP19061MF_0410315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19061MF_0410315, 1, (STRLEN(?targetMotifMatchCigarP19061MF_0410315) - STRLEN(REPLACE(?targetMotifMatchCigarP19061MF_0410315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), '')))), '[^-]', ''))) AS ?step226) .
BIND(((?step226 + ?targetMotifMatchRegionMatchBeginPositionMF_0410316) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04103a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag28) .
}
BIND(IF(BOUND(?tagdisulf), ?caseWithTag28, ?UNBOUND_VARIABLE) AS ?case6) .
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_04103 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_04103#construct |
