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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_04153#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04153#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_04153#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04153#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_04153#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04153#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_04153#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_04153#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_04153#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_04153#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_04153#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_04153#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:976618 up:source unirule:MF_04153 . _:976619 up:source unirule:MF_04153 . _:976620 up:source unirule:MF_04153 . _:976621 up:source unirule:MF_04153 . _:976622 up:source unirule:MF_04153 . _:976623 up:source unirule:MF_04153 . _:976624 up:source unirule:MF_04153 . _:976625 up:source unirule:MF_04153 . _:976626 up:source unirule:MF_04153 . _:976627 up:source unirule:MF_04153 . _:976628 up:source unirule:MF_04153 . _:976629 up:source unirule:MF_04153 . ?this up:annotation ?annotation0 , ?annotation1 , ?annotation2 ; up:classifiedWith GO:0003697 , GO:0006281 , GO:0006310 , GO:0039693 , keyword:1194 , keyword:233 , keyword:234 , keyword:238 . ?annotation0 a up:Function_Annotation ; rdfs:comment 'Single-stranded DNA-binding protein that participates in viral DNA replication, formation of concatemers, recombination and repair of double-stranded breaks. Coats the lagging-strand ssDNA as the replication fork advances and stimulates the activities of viral DNA polymerase and primase/helicase. Coordinates simultaneous synthesis of leading- and lagging-strands. Together with DNA primase/helicase, promotes pairing of two homologous DNA molecules containing complementary single-stranded regions and mediates homologous DNA strand exchange. Promotes also the formation of joint molecules. Disrupts loops, hairpins and other secondary structures present on ssDNA to reduce and eliminate pausing of viral DNA polymerase at specific sites during elongation.' . ?annotation1 a up:Domain_Annotation ; rdfs:comment 'The acidic C-terminus is involved in modulating the ssDNA binding properties. It is also required for dimer formation and for interactions with the viral DNA polymerase and the helicase.' . ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Teseptimavirus single-stranded DNA-binding protein family.' . ?pfs5 up:annotation ?annotation6 . ?annotation6 faldo:begin ?pfsb7 ; faldo:end ?pfse8 ; rdf:type up:Region_Annotation ; rdfs:comment 'Dimerization and interaction with the viral DNA polymerase and helicase' . ?pfsb7 faldo:position ?thisPositionOn9 ; rdf:type faldo:ExactPosition . ?pfse8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . _:976630 a rdf:Statement ; up:attribution _:976618 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:976631 a rdf:Statement ; up:attribution _:976619 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:976632 a rdf:Statement ; up:attribution _:976620 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:976633 a rdf:Statement ; up:attribution _:976621 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:233 . _:976634 a rdf:Statement ; up:attribution _:976622 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:976635 a rdf:Statement ; up:attribution _:976623 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:976636 a rdf:Statement ; up:attribution _:976624 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1194 . _:976637 a rdf:Statement ; up:attribution _:976625 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003697 . _:976638 a rdf:Statement ; up:attribution _:976626 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006310 . _:976639 a rdf:Statement ; up:attribution _:976627 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006281 . _:976640 a rdf:Statement ; up:attribution _:976628 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0039693 . _:976641 a rdf:Statement ; up:source unirule:MF_04153 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:976642 a rdf:Statement ; up:attribution _:976629 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04153 #Rule MF_04153 Created by:? on:2021-01-17 Modified by:ipedruzz on:2021-02-25 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04153 . ?thisOrganism rdfs:subClassOf+ taxon:10239 . BIND(URI(CONCAT(STR(?this), '#MF_04153a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_04153a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_04153a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch15 faldo:location ?templateMotifSequenceMatchRegionP0369616 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0369618 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03696MF_0415311 . ?templateMotifSequenceMatchRegionP0369616 faldo:begin ?templateMotifSequenceMatchBeginP0369617 . ?templateMotifSequenceMatchBeginP0369617 faldo:position ?templateMotifSequenceMatchBeginPositionP0369612 ; faldo:reference isoform:P03696-1 . ?templateMotifSequenceProfileAlignmentOperationP0369618 edam:has_input signature:MF_04153 ; rdf:type edam:operation_0300 . ?targetMotifMatch19 faldo:location ?targetMotifMatchRegionMatch20 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0415322 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03696MF_0415313 . ?targetMotifMatchRegionMatch20 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0415321 . ?targetMotifMatchRegionMatchBeginMF_0415321 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0415314 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0415322 edam:has_input signature:MF_04153 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03696MF_0415311, 1, (STRLEN(?templateMotifCigarP03696MF_0415311) - STRLEN(REPLACE(?templateMotifCigarP03696MF_0415311, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP0369612) + 1)), '}'), '')))), '[a-z]', '')) AS ?step123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03696MF_0415313, 1, (STRLEN(?targetMotifMatchCigarP03696MF_0415313) - STRLEN(REPLACE(?targetMotifMatchCigarP03696MF_0415313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03696MF_0415313, 1, (STRLEN(?targetMotifMatchCigarP03696MF_0415313) - STRLEN(REPLACE(?targetMotifMatchCigarP03696MF_0415313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step123), '}'), '')))), '[^-]', ''))) AS ?step224) . BIND(((?step224 + ?targetMotifMatchRegionMatchBeginPositionMF_0415314) - 1) AS ?thisPositionOn9) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03696MF_0415311, 1, (STRLEN(?templateMotifCigarP03696MF_0415311) - STRLEN(REPLACE(?templateMotifCigarP03696MF_0415311, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP0369612) + 1)), '}'), '')))), '[a-z]', '')) AS ?step125) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03696MF_0415313, 1, (STRLEN(?targetMotifMatchCigarP03696MF_0415313) - STRLEN(REPLACE(?targetMotifMatchCigarP03696MF_0415313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03696MF_0415313, 1, (STRLEN(?targetMotifMatchCigarP03696MF_0415313) - STRLEN(REPLACE(?targetMotifMatchCigarP03696MF_0415313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), '')))), '[^-]', ''))) AS ?step226) . BIND(((?step226 + ?targetMotifMatchRegionMatchBeginPositionMF_0415314) - 1) AS ?thisPositionOn10) . BIND(?this AS ?pfs1t27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn9))) AS ?pfsb7) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfse8) . FILTER ((BOUND(?thisPositionOn9) && BOUND(?thisPositionOn10))) . BIND(URI(CONCAT(STR(?this), '#MF_04153a6')) AS ?annotation6) . BIND(?this AS ?pfs5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:110456 . BIND(?this AS ?case3) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:110456 . })) . BIND(?this AS ?case4) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_04153 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_04153#construct |