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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-32 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-33 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-10 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-35 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-11 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-12 |
| http://purl.uniprot.org/unirules/MF_04165#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04165#construct-template-36 |
| http://purl.uniprot.org/unirules/MF_04165#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_04165#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_04165#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_04165#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_04165#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_04165#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:980691 up:source unirule:MF_04165 . _:980692 up:source unirule:MF_04165 . _:980693 up:source unirule:MF_04165 . _:980694 up:source unirule:MF_04165 . _:980695 up:source unirule:MF_04165 . _:980696 up:source unirule:MF_04165 . _:980697 up:source unirule:MF_04165 . _:980698 up:source unirule:MF_04165 . _:980699 up:source unirule:MF_04165 . _:980700 up:source unirule:MF_04165 . ?this up:alternativeName ?name1 ; up:annotation ?annotation2 , ?annotation3 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0019086 , GO:0140537 ; up:recommendedName ?name0 . ?name0 up:fullName 'Late transcription coactivator' ; rdf:type up:Structured_Name . ?name1 up:fullName 'RNA polymerase-associated protein Gp33' ; rdf:type up:Structured_Name . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Activates transcription at late promoters when the sliding clamp is present. Binds to both the host RNA polymerase (RNAP) and the upstream dsDNA.' . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'Interacts with the beta subunit of host RNAP RpoB (via flap domain). Part of the transcription activation complex containing host RNAP, the viral RNA polymerase sigma-like factor, the coactivator gp33, and the sliding clamp.' . ?annotation4 a up:Domain_Annotation ; rdfs:comment 'The C-terminus is involved in transcriptional enhancement.' . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Tevenvirinae late transcription coactivator family.' . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with host RNAP' . ?pfsb8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; rdf:type up:Region_Annotation ; rdfs:comment 'Involved in transcriptional enhancement' . ?pfsb14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . _:980701 a rdf:Statement ; up:attribution _:980691 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:980702 a rdf:Statement ; up:attribution _:980692 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:980703 a rdf:Statement ; up:attribution _:980693 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:980704 a rdf:Statement ; up:attribution _:980694 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:980705 a rdf:Statement ; up:attribution _:980695 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:980706 a rdf:Statement ; up:attribution _:980696 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:980707 a rdf:Statement ; up:attribution _:980697 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0140537 . _:980708 a rdf:Statement ; up:attribution _:980698 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019086 . _:980709 a rdf:Statement ; up:source unirule:MF_04165 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:980710 a rdf:Statement ; up:attribution _:980699 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:980711 a rdf:Statement ; up:source unirule:MF_04165 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:980712 a rdf:Statement ; up:attribution _:980700 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04165 #Rule MF_04165 Created by:? on:2021-04-16 Modified by:Chantal Hulo on:2021-04-27 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04165 . ?thisOrganism rdfs:subClassOf+ taxon:10239 . BIND(URI(CONCAT(STR(?this), '#MF_04165a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04165a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04165a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_04165a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_04165a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_04165a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch22 faldo:location ?templateMotifSequenceMatchRegionP1333823 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1333825 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP13338MF_0416518 . ?templateMotifSequenceMatchRegionP1333823 faldo:begin ?templateMotifSequenceMatchBeginP1333824 . ?templateMotifSequenceMatchBeginP1333824 faldo:position ?templateMotifSequenceMatchBeginPositionP1333819 ; faldo:reference isoform:P13338-1 . ?templateMotifSequenceProfileAlignmentOperationP1333825 edam:has_input signature:MF_04165 ; rdf:type edam:operation_0300 . ?targetMotifMatch26 faldo:location ?targetMotifMatchRegionMatch27 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0416529 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP13338MF_0416520 . ?targetMotifMatchRegionMatch27 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0416528 . ?targetMotifMatchRegionMatchBeginMF_0416528 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0416521 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0416529 edam:has_input signature:MF_04165 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13338MF_0416518, 1, (STRLEN(?templateMotifCigarP13338MF_0416518) - STRLEN(REPLACE(?templateMotifCigarP13338MF_0416518, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionP1333819) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13338MF_0416520, 1, (STRLEN(?targetMotifMatchCigarP13338MF_0416520) - STRLEN(REPLACE(?targetMotifMatchCigarP13338MF_0416520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13338MF_0416520, 1, (STRLEN(?targetMotifMatchCigarP13338MF_0416520) - STRLEN(REPLACE(?targetMotifMatchCigarP13338MF_0416520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) . BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0416521) - 1) AS ?thisPositionOn10) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13338MF_0416518, 1, (STRLEN(?templateMotifCigarP13338MF_0416518) - STRLEN(REPLACE(?templateMotifCigarP13338MF_0416518, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP1333819) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13338MF_0416520, 1, (STRLEN(?targetMotifMatchCigarP13338MF_0416520) - STRLEN(REPLACE(?targetMotifMatchCigarP13338MF_0416520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13338MF_0416520, 1, (STRLEN(?targetMotifMatchCigarP13338MF_0416520) - STRLEN(REPLACE(?targetMotifMatchCigarP13338MF_0416520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) . BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0416521) - 1) AS ?thisPositionOn11) . BIND(?this AS ?pfs1t34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) . FILTER ((BOUND(?thisPositionOn10) && BOUND(?thisPositionOn11))) . BIND(URI(CONCAT(STR(?this), '#MF_04165a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP1333840 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1333842 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP13338MF_0416535 . ?templateMotifSequenceMatchRegionP1333840 faldo:begin ?templateMotifSequenceMatchBeginP1333841 . ?templateMotifSequenceMatchBeginP1333841 faldo:position ?templateMotifSequenceMatchBeginPositionP1333836 ; faldo:reference isoform:P13338-1 . ?templateMotifSequenceProfileAlignmentOperationP1333842 edam:has_input signature:MF_04165 ; rdf:type edam:operation_0300 . ?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0416546 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP13338MF_0416537 . ?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0416545 . ?targetMotifMatchRegionMatchBeginMF_0416545 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0416538 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0416546 edam:has_input signature:MF_04165 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13338MF_0416535, 1, (STRLEN(?templateMotifCigarP13338MF_0416535) - STRLEN(REPLACE(?templateMotifCigarP13338MF_0416535, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP1333836) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13338MF_0416537, 1, (STRLEN(?targetMotifMatchCigarP13338MF_0416537) - STRLEN(REPLACE(?targetMotifMatchCigarP13338MF_0416537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13338MF_0416537, 1, (STRLEN(?targetMotifMatchCigarP13338MF_0416537) - STRLEN(REPLACE(?targetMotifMatchCigarP13338MF_0416537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) . BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0416538) - 1) AS ?thisPositionOn16) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13338MF_0416535, 1, (STRLEN(?templateMotifCigarP13338MF_0416535) - STRLEN(REPLACE(?templateMotifCigarP13338MF_0416535, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP1333836) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13338MF_0416537, 1, (STRLEN(?targetMotifMatchCigarP13338MF_0416537) - STRLEN(REPLACE(?targetMotifMatchCigarP13338MF_0416537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13338MF_0416537, 1, (STRLEN(?targetMotifMatchCigarP13338MF_0416537) - STRLEN(REPLACE(?targetMotifMatchCigarP13338MF_0416537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0416538) - 1) AS ?thisPositionOn17) . BIND(?this AS ?pfs1t51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) . FILTER (REGEX('[NQS][NST]L[DE][DFGI][FL][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) . BIND(URI(CONCAT(STR(?this), '#MF_04165a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_04165 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_04165#construct |