| http://purl.uniprot.org/unirules/MF_01379#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:497710 up:source unirule:MF_01379 .
_:497711 up:source unirule:MF_01379 .
_:497712 up:source unirule:MF_01379 .
_:497713 up:source unirule:MF_01379 .
_:497714 up:source unirule:MF_01379 .
_:497715 up:source unirule:MF_01379 .
_:497716 up:source unirule:MF_01379 .
_:497717 up:source unirule:MF_01379 .
_:497718 up:source unirule:MF_01379 .
_:497719 up:source unirule:MF_01379 .
_:497720 up:source unirule:MF_01379 .
_:497721 up:source unirule:MF_01379 .
_:497722 up:source unirule:MF_01379 .
_:497723 up:source unirule:MF_01379 .
_:497724 up:source unirule:MF_01379 .
_:497725 up:source unirule:MF_01379 .
_:497726 up:source unirule:MF_01379 .
_:497727 up:source unirule:MF_01379 .
_:497728 up:source unirule:MF_01379 .
_:497729 up:source unirule:MF_01379 .
_:497730 up:source unirule:MF_01379 .
_:497731 up:source unirule:MF_01379 .
_:497732 up:source unirule:MF_01379 .
_:497733 up:source unirule:MF_01379 .
_:497734 up:source unirule:MF_01379 .
_:497735 up:source unirule:MF_01379 .
_:497736 up:source unirule:MF_01379 .
_:497737 up:source unirule:MF_01379 .
_:497738 up:source unirule:MF_01379 .
_:497739 up:source unirule:MF_01379 .
_:497740 up:source unirule:MF_01379 .
_:497741 up:source unirule:MF_01379 .
_:497742 up:source unirule:MF_01379 .
_:497743 up:source unirule:MF_01379 .
_:497744 up:source unirule:MF_01379 .
_:497745 up:source unirule:MF_01379 .
_:497746 up:source unirule:MF_01379 .
_:497747 up:source unirule:MF_01379 .
_:497748 up:source unirule:MF_01379 .
_:497749 up:source unirule:MF_01379 .
_:497750 up:source unirule:MF_01379 .
_:497751 up:source unirule:MF_01379 .
_:497752 up:source unirule:MF_01379 .
_:497753 up:source unirule:MF_01379 .
_:497754 up:source unirule:MF_01379 .
_:497755 up:source unirule:MF_01379 .
_:497756 up:source unirule:MF_01379 .
_:497757 up:source unirule:MF_01379 .
_:497758 up:source unirule:MF_01379 .
_:497759 up:source unirule:MF_01379 .
_:497760 up:source unirule:MF_01379 .
_:497761 up:source unirule:MF_01379 .
_:497762 up:source unirule:MF_01379 .
_:497763 up:source unirule:MF_01379 .
_:497764 up:source unirule:MF_01379 .
_:497765 up:source unirule:MF_01379 .
_:497766 up:source unirule:MF_01379 .
_:497767 up:source unirule:MF_01379 .
_:497768 up:source unirule:MF_01379 .
_:497769 up:source unirule:MF_01379 .
_:497770 up:source unirule:MF_01379 .
_:497771 up:source unirule:MF_01379 .
_:497772 up:source unirule:MF_01379 .
_:497773 up:source unirule:MF_01379 .
_:497774 up:source unirule:MF_01379 .
_:497775 up:source unirule:MF_01379 .
_:497776 up:source unirule:MF_01379 .
_:497777 up:source unirule:MF_01379 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0005506 ,
GO:0009055 ,
GO:0015979 ,
GO:0016168 ,
GO:0016682 ,
keyword:106 ,
keyword:1133 ,
keyword:148 ,
keyword:157 ,
keyword:249 ,
keyword:359 ,
keyword:408 ,
keyword:460 ,
keyword:464 ,
keyword:472 ,
keyword:479 ,
keyword:560 ,
keyword:602 ,
keyword:604 ,
keyword:812 ,
keyword:813 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.10.3.9' ;
up:fullName 'Photosystem II protein D1' ;
up:shortName 'PSII D1 protein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Photosystem II Q(B) protein' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'psbA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbD) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Cofactor_Annotation ;
rdfs:comment 'The D1/D2 heterodimer binds P680, chlorophylls that are the primary electron donor of PSII, and subsequent electron acceptors. It shares a non-heme iron and each subunit binds pheophytin, quinone, additional chlorophylls, carotenoids and lipids. D1 provides most of the ligands for the Mn4-Ca-O5 cluster of the oxygen-evolving complex (OEC). There is also a Cl(-1) ion associated with D1 and D2, which is required for oxygen evolution. The PSII complex binds additional chlorophylls, carotenoids and specific lipids.' .
?annotation7 a up:PTM_Annotation ;
rdfs:comment '@RESIDUE_NAME_AT_POS|Tyr|161|@ forms a radical intermediate that is referred to as redox-active TyrZ, YZ or Y-Z.' .
?annotation8 a up:Annotation ;
rdfs:comment '2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water.' .
?annotation9 a up:Annotation ;
rdfs:comment 'Herbicides such as atrazine, BNT, diuron or ioxynil bind in the Q(B) binding site and block subsequent electron transfer.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the reaction center PufL/M/PsbA/D family.' .
?case11 up:classifiedWith keyword:7 .
?case12 up:classifiedWith keyword:597 .
?case14 up:classifiedWith GO:0009535 .
?case15 up:classifiedWith keyword:1003 ,
keyword:997 .
?case17 up:classifiedWith keyword:793 .
?case19 up:classifiedWith GO:0005886 .
?case20 up:classifiedWith GO:0042651 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by CtpA' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylthreonine' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 up:ligandPart ?ligand73 ;
rdfs:subClassOf chebi:25107 ,
chebi:58416 .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:189552 .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf chebi:189552 .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
up:ligand ?ligand94 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand94 up:ligandPart ?ligand94 ;
rdfs:subClassOf chebi:25107 ,
chebi:58416 .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf chebi:24875 .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
up:ligand ?ligand108 ;
rdf:type up:Binding_Site_Annotation .
?pfsb106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand108 rdfs:subClassOf chebi:24875 .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
up:ligand ?ligand115 ;
rdf:type up:Binding_Site_Annotation .
?pfsb113 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?ligand115 rdfs:subClassOf chebi:189552 .
?pfs118 up:annotation ?annotation119 .
?annotation119 faldo:begin ?pfsb120 ;
faldo:end ?pfse121 ;
up:ligand ?ligand122 ;
rdf:type up:Binding_Site_Annotation .
?pfsb120 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?pfse121 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?ligand122 rdfs:subClassOf chebi:189552 .
?pfs125 up:annotation ?annotation126 .
?annotation126 faldo:begin ?pfsb127 ;
faldo:end ?pfse128 ;
up:ligand ?ligand129 ;
rdf:type up:Binding_Site_Annotation .
?pfsb127 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?pfse128 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?ligand129 rdfs:subClassOf chebi:189552 .
?pfs132 up:annotation ?annotation133 .
?annotation133 faldo:begin ?pfsb134 ;
faldo:end ?pfse135 ;
up:ligand ?ligand136 ;
rdf:type up:Binding_Site_Annotation .
?pfsb134 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?pfse135 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?ligand136 rdfs:subClassOf chebi:189552 .
?pfs139 up:annotation ?annotation140 .
?annotation140 faldo:begin ?pfsb141 ;
faldo:end ?pfse142 ;
up:ligand ?ligand143 ;
rdf:type up:Binding_Site_Annotation .
?pfsb141 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?pfse142 faldo:position ?thisPositionOn145 ;
rdf:type faldo:ExactPosition .
?ligand143 rdfs:subClassOf chebi:136840 .
?pfs146 up:annotation ?annotation147 .
?annotation147 faldo:begin ?pfsb148 ;
faldo:end ?pfse149 ;
up:ligand ?ligand150 ;
rdf:type up:Binding_Site_Annotation .
?pfsb148 faldo:position ?thisPositionOn151 ;
rdf:type faldo:ExactPosition .
?pfse149 faldo:position ?thisPositionOn152 ;
rdf:type faldo:ExactPosition .
?ligand150 rdfs:subClassOf chebi:132124 .
?pfs153 up:annotation ?annotation154 .
?annotation154 faldo:begin ?pfsb155 ;
faldo:end ?pfse156 ;
up:ligand ?ligand157 ;
rdf:type up:Binding_Site_Annotation .
?pfsb155 faldo:position ?thisPositionOn158 ;
rdf:type faldo:ExactPosition .
?pfse156 faldo:position ?thisPositionOn159 ;
rdf:type faldo:ExactPosition .
?ligand157 rdfs:subClassOf chebi:132124 .
?pfs160 up:annotation ?annotation161 .
?annotation161 faldo:begin ?pfsb162 ;
faldo:end ?pfse163 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Tyrosine radical intermediate' .
?pfsb162 faldo:position ?thisPositionOn164 ;
rdf:type faldo:ExactPosition .
?pfse163 faldo:position ?thisPositionOn165 ;
rdf:type faldo:ExactPosition .
?pfs166 up:annotation ?annotation167 .
?annotation167 faldo:begin ?pfsb168 ;
faldo:end ?pfse169 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Stabilizes free radical intermediate' .
?pfsb168 faldo:position ?thisPositionOn170 ;
rdf:type faldo:ExactPosition .
?pfse169 faldo:position ?thisPositionOn171 ;
rdf:type faldo:ExactPosition .
?pfs172 up:annotation ?annotation173 .
?annotation173 faldo:begin ?pfsb174 ;
faldo:end ?pfse175 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Photosystem II protein D1' .
?pfsb174 faldo:position ?thisPositionOn176 ;
rdf:type faldo:ExactPosition .
?pfse175 faldo:position ?thisPositionOn177 ;
rdf:type faldo:ExactPosition .
?pfs178 up:annotation ?annotation179 .
?annotation179 faldo:begin ?pfsb180 ;
faldo:end ?pfse181 ;
rdf:type up:Propeptide_Annotation .
?pfsb180 faldo:position ?thisPositionOn182 ;
rdf:type faldo:ExactPosition .
?pfse181 faldo:position ?thisPositionOn183 ;
rdf:type faldo:ExactPosition .
?pfs184 up:annotation ?annotation185 .
?annotation185 faldo:begin ?pfsb186 ;
faldo:end ?pfse187 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Photosystem II protein D1' .
?pfsb186 faldo:position ?thisPositionOn188 ;
rdf:type faldo:ExactPosition .
?pfse187 faldo:position ?thisPositionOn189 ;
rdf:type faldo:ExactPosition .
?pfs190 up:annotation ?annotation191 .
?annotation191 faldo:begin ?pfsb192 ;
faldo:end ?pfse193 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Photosystem II protein D1' .
?pfsb192 faldo:position ?thisPositionOn194 ;
rdf:type faldo:ExactPosition .
?pfse193 faldo:position ?thisPositionOn195 ;
rdf:type faldo:ExactPosition .
?pfs196 up:annotation ?annotation197 .
?annotation197 faldo:begin ?pfsb198 ;
faldo:end ?pfse199 ;
rdf:type up:Propeptide_Annotation .
?pfsb198 faldo:position ?thisPositionOn200 ;
rdf:type faldo:ExactPosition .
?pfse199 faldo:position ?thisPositionOn201 ;
rdf:type faldo:ExactPosition .
?pfs202 up:annotation ?annotation203 .
?annotation203 faldo:begin ?pfsb204 ;
faldo:end ?pfse205 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb204 faldo:position ?thisPositionOn206 ;
rdf:type faldo:ExactPosition .
?pfse205 faldo:position ?thisPositionOn207 ;
rdf:type faldo:ExactPosition .
_:497778 a rdf:Statement ;
up:attribution _:497710 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:497779 a rdf:Statement ;
up:attribution _:497711 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:497780 a rdf:Statement ;
up:attribution _:497712 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:497781 a rdf:Statement ;
up:attribution _:497713 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:497782 a rdf:Statement ;
up:attribution _:497714 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:497783 a rdf:Statement ;
up:attribution _:497715 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:497784 a rdf:Statement ;
up:attribution _:497716 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:497785 a rdf:Statement ;
up:attribution _:497717 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:497786 a rdf:Statement ;
up:attribution _:497718 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:497787 a rdf:Statement ;
up:attribution _:497719 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:497788 a rdf:Statement ;
up:attribution _:497720 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:106 .
_:497789 a rdf:Statement ;
up:attribution _:497721 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:148 .
_:497790 a rdf:Statement ;
up:attribution _:497722 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:157 .
_:497791 a rdf:Statement ;
up:attribution _:497723 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:249 .
_:497792 a rdf:Statement ;
up:attribution _:497724 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:359 .
_:497793 a rdf:Statement ;
up:attribution _:497725 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:497794 a rdf:Statement ;
up:attribution _:497726 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:497795 a rdf:Statement ;
up:attribution _:497727 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:497796 a rdf:Statement ;
up:attribution _:497728 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:497797 a rdf:Statement ;
up:attribution _:497729 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:497798 a rdf:Statement ;
up:attribution _:497730 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:497799 a rdf:Statement ;
up:attribution _:497731 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:602 .
_:497800 a rdf:Statement ;
up:attribution _:497732 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:604 .
_:497801 a rdf:Statement ;
up:attribution _:497733 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:497802 a rdf:Statement ;
up:attribution _:497734 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:497803 a rdf:Statement ;
up:attribution _:497735 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:497804 a rdf:Statement ;
up:attribution _:497736 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016168 .
_:497805 a rdf:Statement ;
up:attribution _:497737 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009055 .
_:497806 a rdf:Statement ;
up:attribution _:497738 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:497807 a rdf:Statement ;
up:attribution _:497739 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015979 .
_:497808 a rdf:Statement ;
up:attribution _:497740 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016682 .
_:497809 a rdf:Statement ;
up:attribution _:497741 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:497810 a rdf:Statement ;
up:attribution _:497742 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:497811 a rdf:Statement ;
up:attribution _:497743 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009535 .
_:497812 a rdf:Statement ;
up:attribution _:497744 ;
rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:497813 a rdf:Statement ;
up:attribution _:497745 ;
rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:497814 a rdf:Statement ;
up:attribution _:497746 ;
rdf:subject ?case17 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:793 .
_:497815 a rdf:Statement ;
up:attribution _:497747 ;
rdf:subject ?case19 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:497816 a rdf:Statement ;
up:attribution _:497748 ;
rdf:subject ?case20 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042651 .
_:497817 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:497818 a rdf:Statement ;
up:attribution _:497749 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:497819 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:497820 a rdf:Statement ;
up:attribution _:497750 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:497821 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:497822 a rdf:Statement ;
up:attribution _:497751 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:497823 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:497824 a rdf:Statement ;
up:attribution _:497752 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:497825 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:497826 a rdf:Statement ;
up:attribution _:497753 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:497827 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:497828 a rdf:Statement ;
up:attribution _:497754 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:497829 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:497830 a rdf:Statement ;
up:attribution _:497755 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:497831 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:497832 a rdf:Statement ;
up:attribution _:497756 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:497833 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:497834 a rdf:Statement ;
up:attribution _:497757 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:497835 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:497836 a rdf:Statement ;
up:attribution _:497758 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:497837 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:497838 a rdf:Statement ;
up:attribution _:497759 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:497839 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:497840 a rdf:Statement ;
up:attribution _:497760 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:497841 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:497842 a rdf:Statement ;
up:attribution _:497761 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:497843 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:497844 a rdf:Statement ;
up:attribution _:497762 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:497845 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:497846 a rdf:Statement ;
up:attribution _:497763 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:497847 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:497848 a rdf:Statement ;
up:attribution _:497764 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:497849 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:497850 a rdf:Statement ;
up:attribution _:497765 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:497851 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs132 ;
rdf:predicate up:annotation ;
rdf:object ?annotation133 .
_:497852 a rdf:Statement ;
up:attribution _:497766 ;
rdf:subject ?pfs132 ;
rdf:predicate up:annotation ;
rdf:object ?annotation133 .
_:497853 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs139 ;
rdf:predicate up:annotation ;
rdf:object ?annotation140 .
_:497854 a rdf:Statement ;
up:attribution _:497767 ;
rdf:subject ?pfs139 ;
rdf:predicate up:annotation ;
rdf:object ?annotation140 .
_:497855 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs146 ;
rdf:predicate up:annotation ;
rdf:object ?annotation147 .
_:497856 a rdf:Statement ;
up:attribution _:497768 ;
rdf:subject ?pfs146 ;
rdf:predicate up:annotation ;
rdf:object ?annotation147 .
_:497857 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs153 ;
rdf:predicate up:annotation ;
rdf:object ?annotation154 .
_:497858 a rdf:Statement ;
up:attribution _:497769 ;
rdf:subject ?pfs153 ;
rdf:predicate up:annotation ;
rdf:object ?annotation154 .
_:497859 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs160 ;
rdf:predicate up:annotation ;
rdf:object ?annotation161 .
_:497860 a rdf:Statement ;
up:attribution _:497770 ;
rdf:subject ?pfs160 ;
rdf:predicate up:annotation ;
rdf:object ?annotation161 .
_:497861 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs166 ;
rdf:predicate up:annotation ;
rdf:object ?annotation167 .
_:497862 a rdf:Statement ;
up:attribution _:497771 ;
rdf:subject ?pfs166 ;
rdf:predicate up:annotation ;
rdf:object ?annotation167 .
_:497863 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs172 ;
rdf:predicate up:annotation ;
rdf:object ?annotation173 .
_:497864 a rdf:Statement ;
up:attribution _:497772 ;
rdf:subject ?pfs172 ;
rdf:predicate up:annotation ;
rdf:object ?annotation173 .
_:497865 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs178 ;
rdf:predicate up:annotation ;
rdf:object ?annotation179 .
_:497866 a rdf:Statement ;
up:attribution _:497773 ;
rdf:subject ?pfs178 ;
rdf:predicate up:annotation ;
rdf:object ?annotation179 .
_:497867 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs184 ;
rdf:predicate up:annotation ;
rdf:object ?annotation185 .
_:497868 a rdf:Statement ;
up:attribution _:497774 ;
rdf:subject ?pfs184 ;
rdf:predicate up:annotation ;
rdf:object ?annotation185 .
_:497869 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs190 ;
rdf:predicate up:annotation ;
rdf:object ?annotation191 .
_:497870 a rdf:Statement ;
up:attribution _:497775 ;
rdf:subject ?pfs190 ;
rdf:predicate up:annotation ;
rdf:object ?annotation191 .
_:497871 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs196 ;
rdf:predicate up:annotation ;
rdf:object ?annotation197 .
_:497872 a rdf:Statement ;
up:attribution _:497776 ;
rdf:subject ?pfs196 ;
rdf:predicate up:annotation ;
rdf:object ?annotation197 .
_:497873 a rdf:Statement ;
up:source unirule:MF_01379 ;
rdf:subject ?pfs202 ;
rdf:predicate up:annotation ;
rdf:object ?annotation203 .
_:497874 a rdf:Statement ;
up:attribution _:497777 ;
rdf:subject ?pfs202 ;
rdf:predicate up:annotation ;
rdf:object ?annotation203 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01379
#Rule MF_01379 Created by:? on:2007-12-18 Modified by:Edouard de Castro on:2024-09-02
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01379 .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
} UNION {
?this rdfs:seeAlso signature:MF_01379 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_01379a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP51765213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379208 .
?templateMotifSequenceMatchRegionP51765213 faldo:begin ?templateMotifSequenceMatchBeginP51765214 .
?templateMotifSequenceMatchBeginP51765214 faldo:position ?templateMotifSequenceMatchBeginPositionP51765209 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765215 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379218 .
?targetMotifMatchRegionMatchBeginMF_01379218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379219 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagCleavage) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379208, 1, (STRLEN(?templateMotifCigarP51765MF_01379208) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379208, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP51765209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379210, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379210) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379210, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379210) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_01379211) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379208, 1, (STRLEN(?templateMotifCigarP51765MF_01379208) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379208, CONCAT('^(?:-*[^-]){', STR(((345 - ?templateMotifSequenceMatchBeginPositionP51765209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379210, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379210) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379210, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379210) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_01379211) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t224) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER (REGEX('A[ACDGSTV]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP51765230 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765232 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379225 .
?templateMotifSequenceMatchRegionP51765230 faldo:begin ?templateMotifSequenceMatchBeginP51765231 .
?templateMotifSequenceMatchBeginP51765231 faldo:position ?templateMotifSequenceMatchBeginPositionP51765226 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765232 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379236 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379227 .
?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379235 .
?targetMotifMatchRegionMatchBeginMF_01379235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379228 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379236 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagphospho) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379225, 1, (STRLEN(?templateMotifCigarP51765MF_01379225) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379225, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP51765226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379227, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379227) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379227, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379227) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) .
BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_01379228) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs2t239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP51765245 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765247 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379240 .
?templateMotifSequenceMatchRegionP51765245 faldo:begin ?templateMotifSequenceMatchBeginP51765246 .
?templateMotifSequenceMatchBeginP51765246 faldo:position ?templateMotifSequenceMatchBeginPositionP51765241 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765247 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379251 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379242 .
?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379250 .
?targetMotifMatchRegionMatchBeginMF_01379250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379243 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379251 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacetyl) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379240, 1, (STRLEN(?templateMotifCigarP51765MF_01379240) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379240, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP51765241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379242, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379242) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379242, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379242) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) .
BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_01379243) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs3t254) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP51765260 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765262 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379255 .
?templateMotifSequenceMatchRegionP51765260 faldo:begin ?templateMotifSequenceMatchBeginP51765261 .
?templateMotifSequenceMatchBeginP51765261 faldo:position ?templateMotifSequenceMatchBeginPositionP51765256 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765262 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379266 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379257 .
?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379265 .
?targetMotifMatchRegionMatchBeginMF_01379265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379258 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379266 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379255, 1, (STRLEN(?templateMotifCigarP51765MF_01379255) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379255, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP51765256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379257, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379257) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379257, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379257) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) .
BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_01379258) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379255, 1, (STRLEN(?templateMotifCigarP51765MF_01379255) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379255, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP51765256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1269) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379257, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379257) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379257, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379257) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), '')))), '[^-]', ''))) AS ?step2270) .
BIND(((?step2270 + ?targetMotifMatchRegionMatchBeginPositionMF_01379258) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs4t271) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((BOUND(?thisPositionOn43) && BOUND(?thisPositionOn44))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch276 faldo:location ?templateMotifSequenceMatchRegionP51765277 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765279 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379272 .
?templateMotifSequenceMatchRegionP51765277 faldo:begin ?templateMotifSequenceMatchBeginP51765278 .
?templateMotifSequenceMatchBeginP51765278 faldo:position ?templateMotifSequenceMatchBeginPositionP51765273 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765279 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch280 faldo:location ?targetMotifMatchRegionMatch281 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379283 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379274 .
?targetMotifMatchRegionMatch281 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379282 .
?targetMotifMatchRegionMatchBeginMF_01379282 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379275 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379283 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379272, 1, (STRLEN(?templateMotifCigarP51765MF_01379272) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379272, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP51765273) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1284) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379274, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379274) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379274, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379274) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), '')))), '[^-]', ''))) AS ?step2285) .
BIND(((?step2285 + ?targetMotifMatchRegionMatchBeginPositionMF_01379275) - 1) AS ?thisPositionOn49) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379272, 1, (STRLEN(?templateMotifCigarP51765MF_01379272) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379272, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP51765273) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379274, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379274) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379274, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379274) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) .
BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_01379275) - 1) AS ?thisPositionOn50) .
BIND(?this AS ?pfs4t288) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((BOUND(?thisPositionOn49) && BOUND(?thisPositionOn50))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch293 faldo:location ?templateMotifSequenceMatchRegionP51765294 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765296 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379289 .
?templateMotifSequenceMatchRegionP51765294 faldo:begin ?templateMotifSequenceMatchBeginP51765295 .
?templateMotifSequenceMatchBeginP51765295 faldo:position ?templateMotifSequenceMatchBeginPositionP51765290 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765296 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch297 faldo:location ?targetMotifMatchRegionMatch298 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379300 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379291 .
?targetMotifMatchRegionMatch298 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379299 .
?targetMotifMatchRegionMatchBeginMF_01379299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379292 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379300 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379289, 1, (STRLEN(?templateMotifCigarP51765MF_01379289) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379289, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionP51765290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1301) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379291, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379291) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379291, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379291) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), '')))), '[^-]', ''))) AS ?step2302) .
BIND(((?step2302 + ?targetMotifMatchRegionMatchBeginPositionMF_01379292) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379289, 1, (STRLEN(?templateMotifCigarP51765MF_01379289) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379289, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP51765290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1303) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379291, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379291) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379291, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379291) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), '')))), '[^-]', ''))) AS ?step2304) .
BIND(((?step2304 + ?targetMotifMatchRegionMatchBeginPositionMF_01379292) - 1) AS ?thisPositionOn56) .
BIND(?this AS ?pfs4t305) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((BOUND(?thisPositionOn55) && BOUND(?thisPositionOn56))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch310 faldo:location ?templateMotifSequenceMatchRegionP51765311 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765313 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379306 .
?templateMotifSequenceMatchRegionP51765311 faldo:begin ?templateMotifSequenceMatchBeginP51765312 .
?templateMotifSequenceMatchBeginP51765312 faldo:position ?templateMotifSequenceMatchBeginPositionP51765307 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765313 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch314 faldo:location ?targetMotifMatchRegionMatch315 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379317 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379308 .
?targetMotifMatchRegionMatch315 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379316 .
?targetMotifMatchRegionMatchBeginMF_01379316 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379309 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379317 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379306, 1, (STRLEN(?templateMotifCigarP51765MF_01379306) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379306, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP51765307) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1318) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379308, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379308) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379308, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379308) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), '')))), '[^-]', ''))) AS ?step2319) .
BIND(((?step2319 + ?targetMotifMatchRegionMatchBeginPositionMF_01379309) - 1) AS ?thisPositionOn61) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379306, 1, (STRLEN(?templateMotifCigarP51765MF_01379306) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379306, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionP51765307) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1320) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379308, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379308) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379308, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379308) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), '')))), '[^-]', ''))) AS ?step2321) .
BIND(((?step2321 + ?targetMotifMatchRegionMatchBeginPositionMF_01379309) - 1) AS ?thisPositionOn62) .
BIND(?this AS ?pfs4t322) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER ((BOUND(?thisPositionOn61) && BOUND(?thisPositionOn62))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch327 faldo:location ?templateMotifSequenceMatchRegionP51765328 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765330 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379323 .
?templateMotifSequenceMatchRegionP51765328 faldo:begin ?templateMotifSequenceMatchBeginP51765329 .
?templateMotifSequenceMatchBeginP51765329 faldo:position ?templateMotifSequenceMatchBeginPositionP51765324 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765330 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch331 faldo:location ?targetMotifMatchRegionMatch332 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379334 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379325 .
?targetMotifMatchRegionMatch332 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379333 .
?targetMotifMatchRegionMatchBeginMF_01379333 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379326 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379334 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379323, 1, (STRLEN(?templateMotifCigarP51765MF_01379323) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379323, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP51765324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1335) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379325, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379325) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379325, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379325) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), '')))), '[^-]', ''))) AS ?step2336) .
BIND(((?step2336 + ?targetMotifMatchRegionMatchBeginPositionMF_01379326) - 1) AS ?thisPositionOn67) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379323, 1, (STRLEN(?templateMotifCigarP51765MF_01379323) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379323, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionP51765324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1337) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379325, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379325) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379325, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379325) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), '')))), '[^-]', ''))) AS ?step2338) .
BIND(((?step2338 + ?targetMotifMatchRegionMatchBeginPositionMF_01379326) - 1) AS ?thisPositionOn68) .
BIND(?this AS ?pfs4t339) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((BOUND(?thisPositionOn67) && BOUND(?thisPositionOn68))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch344 faldo:location ?templateMotifSequenceMatchRegionP51765345 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765347 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379340 .
?templateMotifSequenceMatchRegionP51765345 faldo:begin ?templateMotifSequenceMatchBeginP51765346 .
?templateMotifSequenceMatchBeginP51765346 faldo:position ?templateMotifSequenceMatchBeginPositionP51765341 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765347 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch348 faldo:location ?targetMotifMatchRegionMatch349 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379351 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379342 .
?targetMotifMatchRegionMatch349 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379350 .
?targetMotifMatchRegionMatchBeginMF_01379350 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379343 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379351 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379340, 1, (STRLEN(?templateMotifCigarP51765MF_01379340) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379340, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP51765341) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1352) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379342, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379342) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379342, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379342) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), '')))), '[^-]', ''))) AS ?step2353) .
BIND(((?step2353 + ?targetMotifMatchRegionMatchBeginPositionMF_01379343) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs4t354) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch359 faldo:location ?templateMotifSequenceMatchRegionP51765360 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765362 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379355 .
?templateMotifSequenceMatchRegionP51765360 faldo:begin ?templateMotifSequenceMatchBeginP51765361 .
?templateMotifSequenceMatchBeginP51765361 faldo:position ?templateMotifSequenceMatchBeginPositionP51765356 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765362 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch363 faldo:location ?targetMotifMatchRegionMatch364 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379366 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379357 .
?targetMotifMatchRegionMatch364 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379365 .
?targetMotifMatchRegionMatchBeginMF_01379365 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379358 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379366 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379355, 1, (STRLEN(?templateMotifCigarP51765MF_01379355) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379355, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP51765356) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1367) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379357, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379357) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379357, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379357) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), '')))), '[^-]', ''))) AS ?step2368) .
BIND(((?step2368 + ?targetMotifMatchRegionMatchBeginPositionMF_01379358) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs4t369) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch374 faldo:location ?templateMotifSequenceMatchRegionP51765375 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765377 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379370 .
?templateMotifSequenceMatchRegionP51765375 faldo:begin ?templateMotifSequenceMatchBeginP51765376 .
?templateMotifSequenceMatchBeginP51765376 faldo:position ?templateMotifSequenceMatchBeginPositionP51765371 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765377 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch378 faldo:location ?targetMotifMatchRegionMatch379 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379381 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379372 .
?targetMotifMatchRegionMatch379 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379380 .
?targetMotifMatchRegionMatchBeginMF_01379380 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379373 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379381 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379370, 1, (STRLEN(?templateMotifCigarP51765MF_01379370) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379370, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP51765371) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1382) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379372, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379372) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1382), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379372, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379372) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1382), '}'), '')))), '[^-]', ''))) AS ?step2383) .
BIND(((?step2383 + ?targetMotifMatchRegionMatchBeginPositionMF_01379373) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs4t384) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch389 faldo:location ?templateMotifSequenceMatchRegionP51765390 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765392 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379385 .
?templateMotifSequenceMatchRegionP51765390 faldo:begin ?templateMotifSequenceMatchBeginP51765391 .
?templateMotifSequenceMatchBeginP51765391 faldo:position ?templateMotifSequenceMatchBeginPositionP51765386 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765392 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch393 faldo:location ?targetMotifMatchRegionMatch394 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379396 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379387 .
?targetMotifMatchRegionMatch394 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379395 .
?targetMotifMatchRegionMatchBeginMF_01379395 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379388 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379396 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379385, 1, (STRLEN(?templateMotifCigarP51765MF_01379385) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379385, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP51765386) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1397) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379387, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379387) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379387, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379387) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), '')))), '[^-]', ''))) AS ?step2398) .
BIND(((?step2398 + ?targetMotifMatchRegionMatchBeginPositionMF_01379388) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs4t399) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch404 faldo:location ?templateMotifSequenceMatchRegionP51765405 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765407 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379400 .
?templateMotifSequenceMatchRegionP51765405 faldo:begin ?templateMotifSequenceMatchBeginP51765406 .
?templateMotifSequenceMatchBeginP51765406 faldo:position ?templateMotifSequenceMatchBeginPositionP51765401 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765407 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch408 faldo:location ?targetMotifMatchRegionMatch409 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379411 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379402 .
?targetMotifMatchRegionMatch409 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379410 .
?targetMotifMatchRegionMatchBeginMF_01379410 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379403 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379411 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379400, 1, (STRLEN(?templateMotifCigarP51765MF_01379400) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379400, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP51765401) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1412) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379402, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379402) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379402, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379402) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), '')))), '[^-]', ''))) AS ?step2413) .
BIND(((?step2413 + ?targetMotifMatchRegionMatchBeginPositionMF_01379403) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs4t414) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch419 faldo:location ?templateMotifSequenceMatchRegionP51765420 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765422 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379415 .
?templateMotifSequenceMatchRegionP51765420 faldo:begin ?templateMotifSequenceMatchBeginP51765421 .
?templateMotifSequenceMatchBeginP51765421 faldo:position ?templateMotifSequenceMatchBeginPositionP51765416 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765422 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch423 faldo:location ?targetMotifMatchRegionMatch424 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379426 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379417 .
?targetMotifMatchRegionMatch424 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379425 .
?targetMotifMatchRegionMatchBeginMF_01379425 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379418 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379426 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379415, 1, (STRLEN(?templateMotifCigarP51765MF_01379415) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379415, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionP51765416) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1427) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379417, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379417) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379417, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1427), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379417, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379417) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379417, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1427), '}'), '')))), '[^-]', ''))) AS ?step2428) .
BIND(((?step2428 + ?targetMotifMatchRegionMatchBeginPositionMF_01379418) - 1) AS ?thisPositionOn109) .
BIND(?thisPositionOn109 AS ?thisPositionOn110) .
BIND(?this AS ?pfs4t429) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse107) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch434 faldo:location ?templateMotifSequenceMatchRegionP51765435 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765437 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379430 .
?templateMotifSequenceMatchRegionP51765435 faldo:begin ?templateMotifSequenceMatchBeginP51765436 .
?templateMotifSequenceMatchBeginP51765436 faldo:position ?templateMotifSequenceMatchBeginPositionP51765431 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765437 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch438 faldo:location ?targetMotifMatchRegionMatch439 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379441 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379432 .
?targetMotifMatchRegionMatch439 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379440 .
?targetMotifMatchRegionMatchBeginMF_01379440 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379433 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379441 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379430, 1, (STRLEN(?templateMotifCigarP51765MF_01379430) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379430, CONCAT('^(?:-*[^-]){', STR(((332 - ?templateMotifSequenceMatchBeginPositionP51765431) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1442) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379432, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379432) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379432, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1442), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379432, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379432) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379432, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1442), '}'), '')))), '[^-]', ''))) AS ?step2443) .
BIND(((?step2443 + ?targetMotifMatchRegionMatchBeginPositionMF_01379433) - 1) AS ?thisPositionOn116) .
BIND(?thisPositionOn116 AS ?thisPositionOn117) .
BIND(?this AS ?pfs4t444) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch449 faldo:location ?templateMotifSequenceMatchRegionP51765450 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765452 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379445 .
?templateMotifSequenceMatchRegionP51765450 faldo:begin ?templateMotifSequenceMatchBeginP51765451 .
?templateMotifSequenceMatchBeginP51765451 faldo:position ?templateMotifSequenceMatchBeginPositionP51765446 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765452 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch453 faldo:location ?targetMotifMatchRegionMatch454 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379456 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379447 .
?targetMotifMatchRegionMatch454 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379455 .
?targetMotifMatchRegionMatchBeginMF_01379455 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379448 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379456 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379445, 1, (STRLEN(?templateMotifCigarP51765MF_01379445) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379445, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP51765446) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1457) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379447, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379447) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1457), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379447, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379447) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1457), '}'), '')))), '[^-]', ''))) AS ?step2458) .
BIND(((?step2458 + ?targetMotifMatchRegionMatchBeginPositionMF_01379448) - 1) AS ?thisPositionOn123) .
BIND(?thisPositionOn123 AS ?thisPositionOn124) .
BIND(?this AS ?pfs4t459) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse121) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn123, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a119')) AS ?annotation119) .
BIND(?this AS ?pfs118) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch464 faldo:location ?templateMotifSequenceMatchRegionP51765465 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765467 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379460 .
?templateMotifSequenceMatchRegionP51765465 faldo:begin ?templateMotifSequenceMatchBeginP51765466 .
?templateMotifSequenceMatchBeginP51765466 faldo:position ?templateMotifSequenceMatchBeginPositionP51765461 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765467 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch468 faldo:location ?targetMotifMatchRegionMatch469 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379471 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379462 .
?targetMotifMatchRegionMatch469 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379470 .
?targetMotifMatchRegionMatchBeginMF_01379470 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379463 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379471 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379460, 1, (STRLEN(?templateMotifCigarP51765MF_01379460) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379460, CONCAT('^(?:-*[^-]){', STR(((342 - ?templateMotifSequenceMatchBeginPositionP51765461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1472) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379462, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379462) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1472), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379462, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379462) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1472), '}'), '')))), '[^-]', ''))) AS ?step2473) .
BIND(((?step2473 + ?targetMotifMatchRegionMatchBeginPositionMF_01379463) - 1) AS ?thisPositionOn130) .
BIND(?thisPositionOn130 AS ?thisPositionOn131) .
BIND(?this AS ?pfs4t474) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfsb127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfse128) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn130, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a126')) AS ?annotation126) .
BIND(?this AS ?pfs125) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch479 faldo:location ?templateMotifSequenceMatchRegionP51765480 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765482 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379475 .
?templateMotifSequenceMatchRegionP51765480 faldo:begin ?templateMotifSequenceMatchBeginP51765481 .
?templateMotifSequenceMatchBeginP51765481 faldo:position ?templateMotifSequenceMatchBeginPositionP51765476 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765482 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch483 faldo:location ?targetMotifMatchRegionMatch484 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379486 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379477 .
?targetMotifMatchRegionMatch484 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379485 .
?targetMotifMatchRegionMatchBeginMF_01379485 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379478 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379486 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379475, 1, (STRLEN(?templateMotifCigarP51765MF_01379475) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379475, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP51765476) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1487) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379477, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379477) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1487), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379477, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379477) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1487), '}'), '')))), '[^-]', ''))) AS ?step2488) .
BIND(((?step2488 + ?targetMotifMatchRegionMatchBeginPositionMF_01379478) - 1) AS ?thisPositionOn137) .
BIND(?thisPositionOn137 AS ?thisPositionOn138) .
BIND(?this AS ?pfs4t489) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfsb134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfse135) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn137, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a133')) AS ?annotation133) .
BIND(?this AS ?pfs132) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch494 faldo:location ?templateMotifSequenceMatchRegionP51765495 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765497 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379490 .
?templateMotifSequenceMatchRegionP51765495 faldo:begin ?templateMotifSequenceMatchBeginP51765496 .
?templateMotifSequenceMatchBeginP51765496 faldo:position ?templateMotifSequenceMatchBeginPositionP51765491 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765497 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch498 faldo:location ?targetMotifMatchRegionMatch499 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379501 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379492 .
?targetMotifMatchRegionMatch499 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379500 .
?targetMotifMatchRegionMatchBeginMF_01379500 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379493 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379501 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379490, 1, (STRLEN(?templateMotifCigarP51765MF_01379490) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379490, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP51765491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1502) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379492, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379492) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1502), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379492, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379492) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1502), '}'), '')))), '[^-]', ''))) AS ?step2503) .
BIND(((?step2503 + ?targetMotifMatchRegionMatchBeginPositionMF_01379493) - 1) AS ?thisPositionOn144) .
BIND(?thisPositionOn144 AS ?thisPositionOn145) .
BIND(?this AS ?pfs4t504) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfsb141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfse142) .
FILTER (REGEX('[YW]', SUBSTR(?thisSequenceValue, ?thisPositionOn144, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a140')) AS ?annotation140) .
BIND(?this AS ?pfs139) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch509 faldo:location ?templateMotifSequenceMatchRegionP51765510 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765512 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379505 .
?templateMotifSequenceMatchRegionP51765510 faldo:begin ?templateMotifSequenceMatchBeginP51765511 .
?templateMotifSequenceMatchBeginP51765511 faldo:position ?templateMotifSequenceMatchBeginPositionP51765506 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765512 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch513 faldo:location ?targetMotifMatchRegionMatch514 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379516 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379507 .
?targetMotifMatchRegionMatch514 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379515 .
?targetMotifMatchRegionMatchBeginMF_01379515 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379508 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379516 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379505, 1, (STRLEN(?templateMotifCigarP51765MF_01379505) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379505, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP51765506) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1517) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379507, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379507) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379507, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1517), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379507, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379507) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379507, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1517), '}'), '')))), '[^-]', ''))) AS ?step2518) .
BIND(((?step2518 + ?targetMotifMatchRegionMatchBeginPositionMF_01379508) - 1) AS ?thisPositionOn151) .
BIND(?thisPositionOn151 AS ?thisPositionOn152) .
BIND(?this AS ?pfs4t519) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfsb148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfse149) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn151, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a147')) AS ?annotation147) .
BIND(?this AS ?pfs146) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch524 faldo:location ?templateMotifSequenceMatchRegionP51765525 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765527 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379520 .
?templateMotifSequenceMatchRegionP51765525 faldo:begin ?templateMotifSequenceMatchBeginP51765526 .
?templateMotifSequenceMatchBeginP51765526 faldo:position ?templateMotifSequenceMatchBeginPositionP51765521 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765527 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch528 faldo:location ?targetMotifMatchRegionMatch529 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379531 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379522 .
?targetMotifMatchRegionMatch529 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379530 .
?targetMotifMatchRegionMatchBeginMF_01379530 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379523 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379531 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379520, 1, (STRLEN(?templateMotifCigarP51765MF_01379520) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379520, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP51765521) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1532) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379522, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379522) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1532), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379522, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379522) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1532), '}'), '')))), '[^-]', ''))) AS ?step2533) .
BIND(((?step2533 + ?targetMotifMatchRegionMatchBeginPositionMF_01379523) - 1) AS ?thisPositionOn158) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379520, 1, (STRLEN(?templateMotifCigarP51765MF_01379520) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379520, CONCAT('^(?:-*[^-]){', STR(((265 - ?templateMotifSequenceMatchBeginPositionP51765521) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1534) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379522, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379522) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1534), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379522, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379522) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1534), '}'), '')))), '[^-]', ''))) AS ?step2535) .
BIND(((?step2535 + ?targetMotifMatchRegionMatchBeginPositionMF_01379523) - 1) AS ?thisPositionOn159) .
BIND(?this AS ?pfs4t536) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfsb155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn159))) AS ?pfse156) .
FILTER (REGEX('[AS]F', SUBSTR(?thisSequenceValue, ?thisPositionOn158, (?thisPositionOn159 - ?thisPositionOn158)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a154')) AS ?annotation154) .
BIND(?this AS ?pfs153) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch541 faldo:location ?templateMotifSequenceMatchRegionP51765542 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765544 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379537 .
?templateMotifSequenceMatchRegionP51765542 faldo:begin ?templateMotifSequenceMatchBeginP51765543 .
?templateMotifSequenceMatchBeginP51765543 faldo:position ?templateMotifSequenceMatchBeginPositionP51765538 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765544 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch545 faldo:location ?targetMotifMatchRegionMatch546 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379548 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379539 .
?targetMotifMatchRegionMatch546 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379547 .
?targetMotifMatchRegionMatchBeginMF_01379547 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379540 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379548 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379537, 1, (STRLEN(?templateMotifCigarP51765MF_01379537) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379537, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP51765538) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1549) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379539, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379539) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379539, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1549), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379539, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379539) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379539, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1549), '}'), '')))), '[^-]', ''))) AS ?step2550) .
BIND(((?step2550 + ?targetMotifMatchRegionMatchBeginPositionMF_01379540) - 1) AS ?thisPositionOn164) .
BIND(?thisPositionOn164 AS ?thisPositionOn165) .
BIND(?this AS ?pfs4t551) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn164))) AS ?pfsb162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn165))) AS ?pfse163) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn164, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a161')) AS ?annotation161) .
BIND(?this AS ?pfs160) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch556 faldo:location ?templateMotifSequenceMatchRegionP51765557 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765559 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379552 .
?templateMotifSequenceMatchRegionP51765557 faldo:begin ?templateMotifSequenceMatchBeginP51765558 .
?templateMotifSequenceMatchBeginP51765558 faldo:position ?templateMotifSequenceMatchBeginPositionP51765553 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765559 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch560 faldo:location ?targetMotifMatchRegionMatch561 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379563 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379554 .
?targetMotifMatchRegionMatch561 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379562 .
?targetMotifMatchRegionMatchBeginMF_01379562 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379555 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379563 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379552, 1, (STRLEN(?templateMotifCigarP51765MF_01379552) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379552, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP51765553) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1564) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379554, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379554) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379554, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1564), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379554, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379554) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379554, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1564), '}'), '')))), '[^-]', ''))) AS ?step2565) .
BIND(((?step2565 + ?targetMotifMatchRegionMatchBeginPositionMF_01379555) - 1) AS ?thisPositionOn170) .
BIND(?thisPositionOn170 AS ?thisPositionOn171) .
BIND(?this AS ?pfs4t566) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn170))) AS ?pfsb168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn171))) AS ?pfse169) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn170, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a167')) AS ?annotation167) .
BIND(?this AS ?pfs166) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch571 faldo:location ?templateMotifSequenceMatchRegionP51765572 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765574 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379567 .
?templateMotifSequenceMatchRegionP51765572 faldo:begin ?templateMotifSequenceMatchBeginP51765573 .
?templateMotifSequenceMatchBeginP51765573 faldo:position ?templateMotifSequenceMatchBeginPositionP51765568 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765574 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch575 faldo:location ?targetMotifMatchRegionMatch576 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379578 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379569 .
?targetMotifMatchRegionMatch576 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379577 .
?targetMotifMatchRegionMatchBeginMF_01379577 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379570 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379578 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(1 AS ?thisPositionOn176) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379567, 1, (STRLEN(?templateMotifCigarP51765MF_01379567) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379567, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP51765568) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1579) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379569, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379569) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1579), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379569, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379569) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1579), '}'), '')))), '[^-]', ''))) AS ?step2580) .
BIND(((?step2580 + ?targetMotifMatchRegionMatchBeginPositionMF_01379570) - 1) AS ?thisPositionOn177) .
BIND(?this AS ?pfs5t581) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn176))) AS ?pfsb174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn177))) AS ?pfse175) .
FILTER ((BOUND(?thisPositionOn176) && BOUND(?thisPositionOn177))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a173')) AS ?annotation173) .
BIND(?this AS ?pfs172) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch586 faldo:location ?templateMotifSequenceMatchRegionP51765587 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765589 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379582 .
?templateMotifSequenceMatchRegionP51765587 faldo:begin ?templateMotifSequenceMatchBeginP51765588 .
?templateMotifSequenceMatchBeginP51765588 faldo:position ?templateMotifSequenceMatchBeginPositionP51765583 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765589 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch590 faldo:location ?targetMotifMatchRegionMatch591 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379593 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379584 .
?targetMotifMatchRegionMatch591 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379592 .
?targetMotifMatchRegionMatchBeginMF_01379592 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379585 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379593 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379582, 1, (STRLEN(?templateMotifCigarP51765MF_01379582) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379582, CONCAT('^(?:-*[^-]){', STR(((345 - ?templateMotifSequenceMatchBeginPositionP51765583) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1594) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379584, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379584) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379584, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1594), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379584, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379584) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379584, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1594), '}'), '')))), '[^-]', ''))) AS ?step2595) .
BIND(((?step2595 + ?targetMotifMatchRegionMatchBeginPositionMF_01379585) - 1) AS ?thisPositionOn182) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn183) .
BIND(?this AS ?pfs5t596) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn182))) AS ?pfsb180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn183))) AS ?pfse181) .
FILTER ((BOUND(?thisPositionOn182) && BOUND(?thisPositionOn183))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a179')) AS ?annotation179) .
BIND(?this AS ?pfs178) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch601 faldo:location ?templateMotifSequenceMatchRegionP51765602 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765604 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379597 .
?templateMotifSequenceMatchRegionP51765602 faldo:begin ?templateMotifSequenceMatchBeginP51765603 .
?templateMotifSequenceMatchBeginP51765603 faldo:position ?templateMotifSequenceMatchBeginPositionP51765598 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765604 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch605 faldo:location ?targetMotifMatchRegionMatch606 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379608 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379599 .
?targetMotifMatchRegionMatch606 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379607 .
?targetMotifMatchRegionMatchBeginMF_01379607 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379600 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379608 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn188) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn189) .
BIND(?this AS ?pfs6t609) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn188))) AS ?pfsb186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn189))) AS ?pfse187) .
FILTER ((BOUND(?thisPositionOn188) && BOUND(?thisPositionOn189))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a185')) AS ?annotation185) .
BIND(?this AS ?pfs184) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch614 faldo:location ?templateMotifSequenceMatchRegionP51765615 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765617 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379610 .
?templateMotifSequenceMatchRegionP51765615 faldo:begin ?templateMotifSequenceMatchBeginP51765616 .
?templateMotifSequenceMatchBeginP51765616 faldo:position ?templateMotifSequenceMatchBeginPositionP51765611 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765617 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch618 faldo:location ?targetMotifMatchRegionMatch619 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379621 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379612 .
?targetMotifMatchRegionMatch619 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379620 .
?targetMotifMatchRegionMatchBeginMF_01379620 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379613 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379621 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379610, 1, (STRLEN(?templateMotifCigarP51765MF_01379610) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379610, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP51765611) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1622) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379612, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379612) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379612, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1622), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379612, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379612) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379612, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1622), '}'), '')))), '[^-]', ''))) AS ?step2623) .
BIND(((?step2623 + ?targetMotifMatchRegionMatchBeginPositionMF_01379613) - 1) AS ?thisPositionOn194) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379610, 1, (STRLEN(?templateMotifCigarP51765MF_01379610) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379610, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP51765611) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1624) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379612, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379612) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379612, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1624), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379612, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379612) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379612, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1624), '}'), '')))), '[^-]', ''))) AS ?step2625) .
BIND(((?step2625 + ?targetMotifMatchRegionMatchBeginPositionMF_01379613) - 1) AS ?thisPositionOn195) .
BIND(?this AS ?pfs7t626) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn194))) AS ?pfsb192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn195))) AS ?pfse193) .
FILTER ((BOUND(?thisPositionOn194) && BOUND(?thisPositionOn195))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a191')) AS ?annotation191) .
BIND(?this AS ?pfs190) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch631 faldo:location ?templateMotifSequenceMatchRegionP51765632 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765634 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379627 .
?templateMotifSequenceMatchRegionP51765632 faldo:begin ?templateMotifSequenceMatchBeginP51765633 .
?templateMotifSequenceMatchBeginP51765633 faldo:position ?templateMotifSequenceMatchBeginPositionP51765628 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765634 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch635 faldo:location ?targetMotifMatchRegionMatch636 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379638 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379629 .
?targetMotifMatchRegionMatch636 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379637 .
?targetMotifMatchRegionMatchBeginMF_01379637 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379630 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379638 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379627, 1, (STRLEN(?templateMotifCigarP51765MF_01379627) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379627, CONCAT('^(?:-*[^-]){', STR(((345 - ?templateMotifSequenceMatchBeginPositionP51765628) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1639) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379629, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379629) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379629, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1639), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379629, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379629) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379629, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1639), '}'), '')))), '[^-]', ''))) AS ?step2640) .
BIND(((?step2640 + ?targetMotifMatchRegionMatchBeginPositionMF_01379630) - 1) AS ?thisPositionOn200) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn201) .
BIND(?this AS ?pfs7t641) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn200))) AS ?pfsb198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn201))) AS ?pfse199) .
FILTER ((BOUND(?thisPositionOn200) && BOUND(?thisPositionOn201))) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a197')) AS ?annotation197) .
BIND(?this AS ?pfs196) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch646 faldo:location ?templateMotifSequenceMatchRegionP51765647 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765649 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP51765MF_01379642 .
?templateMotifSequenceMatchRegionP51765647 faldo:begin ?templateMotifSequenceMatchBeginP51765648 .
?templateMotifSequenceMatchBeginP51765648 faldo:position ?templateMotifSequenceMatchBeginPositionP51765643 ;
faldo:reference isoform:P51765-1 .
?templateMotifSequenceProfileAlignmentOperationP51765649 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?targetMotifMatch650 faldo:location ?targetMotifMatchRegionMatch651 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379653 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP51765MF_01379644 .
?targetMotifMatchRegionMatch651 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379652 .
?targetMotifMatchRegionMatchBeginMF_01379652 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379645 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01379653 edam:has_input signature:MF_01379 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379642, 1, (STRLEN(?templateMotifCigarP51765MF_01379642) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379642, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP51765643) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1654) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379644, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379644) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379644, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1654), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379644, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379644) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379644, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1654), '}'), '')))), '[^-]', ''))) AS ?step2655) .
BIND(((?step2655 + ?targetMotifMatchRegionMatchBeginPositionMF_01379645) - 1) AS ?thisPositionOn206) .
BIND(?thisPositionOn206 AS ?thisPositionOn207) .
BIND(?this AS ?pfs7t656) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn206))) AS ?pfsb204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn207))) AS ?pfse205) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn206, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01379a203')) AS ?annotation203) .
BIND(?this AS ?pfs202) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag657) .
}
BIND(IF(BOUND(?tagacetyl), ?caseWithTag657, ?UNBOUND_VARIABLE) AS ?case11) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag658) .
}
BIND(IF(BOUND(?tagphospho), ?caseWithTag658, ?UNBOUND_VARIABLE) AS ?case12) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag659) .
}
BIND(IF(BOUND(?tagCleavage), ?caseWithTag659, ?UNBOUND_VARIABLE) AS ?case13) .
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33071 .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
BIND(?this AS ?case17) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(?this AS ?case18) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33071 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case19) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
BIND(?this AS ?case20) .
}
}
"xsd:string |
