| http://purl.uniprot.org/unirules/MF_01128#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:393380 up:source unirule:MF_01128 .
_:393381 up:source unirule:MF_01128 .
_:393382 up:source unirule:MF_01128 .
_:393383 up:source unirule:MF_01128 .
_:393384 up:source unirule:MF_01128 .
_:393385 up:source unirule:MF_01128 .
_:393386 up:source unirule:MF_01128 .
_:393387 up:source unirule:MF_01128 .
_:393388 up:source unirule:MF_01128 .
_:393389 up:source unirule:MF_01128 .
_:393390 up:source unirule:MF_01128 .
_:393391 up:source unirule:MF_01128 .
_:393392 up:source unirule:MF_01128 .
_:393393 up:source unirule:MF_01128 .
_:393394 up:source unirule:MF_01128 .
_:393395 up:source unirule:MF_01128 .
_:393396 up:source unirule:MF_01128 .
_:393397 up:source unirule:MF_01128 .
_:393398 up:source unirule:MF_01128 .
_:393399 up:source unirule:MF_01128 .
_:393400 up:source unirule:MF_01128 .
_:393401 up:source unirule:MF_01128 .
_:393402 up:source unirule:MF_01128 .
_:393403 up:source unirule:MF_01128 .
_:393404 up:source unirule:MF_01128 .
_:393405 up:source unirule:MF_01128 .
_:393406 up:source unirule:MF_01128 .
_:393407 up:source unirule:MF_01128 .
_:393408 up:source unirule:MF_01128 .
_:393409 up:source unirule:MF_01128 .
_:393410 up:source unirule:MF_01128 .
_:393411 up:source unirule:MF_01128 .
_:393412 up:source unirule:MF_01128 .
_:393413 up:source unirule:MF_01128 .
_:393414 up:source unirule:MF_01128 .
_:393415 up:source unirule:MF_01128 .
_:393416 up:source unirule:MF_01128 .
_:393417 up:source unirule:MF_01128 .
_:393418 up:source unirule:MF_01128 .
_:393419 up:source unirule:MF_01128 .
_:393420 up:source unirule:MF_01128 .
_:393421 up:source unirule:MF_01128 .
_:393422 up:source unirule:MF_01128 .
_:393423 up:source unirule:MF_01128 .
_:393424 up:source unirule:MF_01128 .
_:393425 up:source unirule:MF_01128 .
_:393426 up:source unirule:MF_01128 .
_:393427 up:source unirule:MF_01128 .
_:393428 up:source unirule:MF_01128 .
_:393429 up:source unirule:MF_01128 .
_:393430 up:source unirule:MF_01128 .
_:393431 up:source unirule:MF_01128 .
_:393432 up:source unirule:MF_01128 .
_:393433 up:source unirule:MF_01128 .
_:393434 up:source unirule:MF_01128 .
_:393435 up:source unirule:MF_01128 .
_:393436 up:source unirule:MF_01128 .
_:393437 up:source unirule:MF_01128 .
_:393438 up:source unirule:MF_01128 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0005886 ,
GO:0006821 ,
GO:0015297 ,
keyword:1003 ,
keyword:1133 ,
keyword:406 ,
keyword:472 ,
keyword:50 ,
keyword:812 ,
keyword:813 ,
keyword:868 ;
up:recommendedName ?name0 .
?name0 up:fullName 'H(+)/Cl(-) exchange transporter ClcA' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Proton-coupled chloride transporter. Functions as antiport system and exchanges two chloride ions for 1 proton. Probably acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation, as part of the extreme acid resistance (XAR) response.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the chloride channel (TC 2.A.49) family. ClcA subfamily.' .
?case8 up:classifiedWith keyword:997 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:17996 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:17996 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:17996 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:17996 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Mediates proton transfer from the outer aqueous phase to the interior of the protein; involved in linking H(+) and Cl(-) transport' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Mediates proton transfer from the protein to the inner aqueous phase' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Intramembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb100 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
rdf:type up:Intramembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb106 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
rdf:type up:Intramembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb112 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfs116 up:annotation ?annotation117 .
?annotation117 faldo:begin ?pfsb118 ;
faldo:end ?pfse119 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb118 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse119 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfs122 up:annotation ?annotation123 .
?annotation123 faldo:begin ?pfsb124 ;
faldo:end ?pfse125 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb124 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfse125 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfs128 up:annotation ?annotation129 .
?annotation129 faldo:begin ?pfsb130 ;
faldo:end ?pfse131 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb130 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?pfse131 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfs134 up:annotation ?annotation135 .
?annotation135 faldo:begin ?pfsb136 ;
faldo:end ?pfse137 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb136 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?pfse137 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?pfs140 up:annotation ?annotation141 .
?annotation141 faldo:begin ?pfsb142 ;
faldo:end ?pfse143 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb142 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?pfse143 faldo:position ?thisPositionOn145 ;
rdf:type faldo:ExactPosition .
?pfs146 up:annotation ?annotation147 .
?annotation147 faldo:begin ?pfsb148 ;
faldo:end ?pfse149 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb148 faldo:position ?thisPositionOn150 ;
rdf:type faldo:ExactPosition .
?pfse149 faldo:position ?thisPositionOn151 ;
rdf:type faldo:ExactPosition .
?pfs152 up:annotation ?annotation153 .
?annotation153 faldo:begin ?pfsb154 ;
faldo:end ?pfse155 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb154 faldo:position ?thisPositionOn156 ;
rdf:type faldo:ExactPosition .
?pfse155 faldo:position ?thisPositionOn157 ;
rdf:type faldo:ExactPosition .
?pfs158 up:annotation ?annotation159 .
?annotation159 faldo:begin ?pfsb160 ;
faldo:end ?pfse161 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb160 faldo:position ?thisPositionOn162 ;
rdf:type faldo:ExactPosition .
?pfse161 faldo:position ?thisPositionOn163 ;
rdf:type faldo:ExactPosition .
?pfs164 up:annotation ?annotation165 .
?annotation165 faldo:begin ?pfsb166 ;
faldo:end ?pfse167 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb166 faldo:position ?thisPositionOn168 ;
rdf:type faldo:ExactPosition .
?pfse167 faldo:position ?thisPositionOn169 ;
rdf:type faldo:ExactPosition .
?pfs170 up:annotation ?annotation171 .
?annotation171 faldo:begin ?pfsb172 ;
faldo:end ?pfse173 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb172 faldo:position ?thisPositionOn174 ;
rdf:type faldo:ExactPosition .
?pfse173 faldo:position ?thisPositionOn175 ;
rdf:type faldo:ExactPosition .
?pfs176 up:annotation ?annotation177 .
?annotation177 faldo:begin ?pfsb178 ;
faldo:end ?pfse179 ;
rdf:type up:Intramembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb178 faldo:position ?thisPositionOn180 ;
rdf:type faldo:ExactPosition .
?pfse179 faldo:position ?thisPositionOn181 ;
rdf:type faldo:ExactPosition .
?pfs182 up:annotation ?annotation183 .
?annotation183 faldo:begin ?pfsb184 ;
faldo:end ?pfse185 ;
rdf:type up:Intramembrane_Annotation ;
rdfs:comment 'Note=Loop between two helices' .
?pfsb184 faldo:position ?thisPositionOn186 ;
rdf:type faldo:ExactPosition .
?pfse185 faldo:position ?thisPositionOn187 ;
rdf:type faldo:ExactPosition .
?pfs188 up:annotation ?annotation189 .
?annotation189 faldo:begin ?pfsb190 ;
faldo:end ?pfse191 ;
rdf:type up:Intramembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb190 faldo:position ?thisPositionOn192 ;
rdf:type faldo:ExactPosition .
?pfse191 faldo:position ?thisPositionOn193 ;
rdf:type faldo:ExactPosition .
?pfs194 up:annotation ?annotation195 .
?annotation195 faldo:begin ?pfsb196 ;
faldo:end ?pfse197 ;
rdf:type up:Intramembrane_Annotation ;
rdfs:comment 'Note=Loop between two helices' .
?pfsb196 faldo:position ?thisPositionOn198 ;
rdf:type faldo:ExactPosition .
?pfse197 faldo:position ?thisPositionOn199 ;
rdf:type faldo:ExactPosition .
?pfs200 up:annotation ?annotation201 .
?annotation201 faldo:begin ?pfsb202 ;
faldo:end ?pfse203 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb202 faldo:position ?thisPositionOn204 ;
rdf:type faldo:ExactPosition .
?pfse203 faldo:position ?thisPositionOn205 ;
rdf:type faldo:ExactPosition .
?pfs206 up:annotation ?annotation207 .
?annotation207 faldo:begin ?pfsb208 ;
faldo:end ?pfse209 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb208 faldo:position ?thisPositionOn210 ;
rdf:type faldo:ExactPosition .
?pfse209 faldo:position ?thisPositionOn211 ;
rdf:type faldo:ExactPosition .
?pfs212 up:annotation ?annotation213 .
?annotation213 faldo:begin ?pfsb214 ;
faldo:end ?pfse215 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Selectivity filter part_1' .
?pfsb214 faldo:position ?thisPositionOn216 ;
rdf:type faldo:ExactPosition .
?pfse215 faldo:position ?thisPositionOn217 ;
rdf:type faldo:ExactPosition .
?pfs218 up:annotation ?annotation219 .
?annotation219 faldo:begin ?pfsb220 ;
faldo:end ?pfse221 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Selectivity filter part_2' .
?pfsb220 faldo:position ?thisPositionOn222 ;
rdf:type faldo:ExactPosition .
?pfse221 faldo:position ?thisPositionOn223 ;
rdf:type faldo:ExactPosition .
?pfs224 up:annotation ?annotation225 .
?annotation225 faldo:begin ?pfsb226 ;
faldo:end ?pfse227 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Selectivity filter part_3' .
?pfsb226 faldo:position ?thisPositionOn228 ;
rdf:type faldo:ExactPosition .
?pfse227 faldo:position ?thisPositionOn229 ;
rdf:type faldo:ExactPosition .
?sam230 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane231 faldo:begin ?transmembraneb232 ;
faldo:end ?transmembranee233 .
?transmembraneb232 faldo:position ?transmembranebp234 .
?transmembranee233 faldo:position ?transmembraneep235 .
?keyword236 up:range ?transmembrane231 .
?keyword237 up:range ?transmembrane231 .
?keyword238 up:range ?transmembrane231 .
?sam239 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane240 faldo:begin ?transmembraneb241 ;
faldo:end ?transmembranee242 .
?transmembraneb241 faldo:position ?transmembranebp243 .
?transmembranee242 faldo:position ?transmembraneep244 .
?keyword245 up:range ?transmembrane240 .
?keyword246 up:range ?transmembrane240 .
?keyword247 up:range ?transmembrane240 .
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up:attribution _:393380 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:393440 a rdf:Statement ;
up:attribution _:393381 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
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up:attribution _:393385 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:50 .
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up:attribution _:393386 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
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up:attribution _:393387 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:868 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015297 .
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rdf:predicate up:classifiedWith ;
rdf:object GO:0006821 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
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rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:393473 a rdf:Statement ;
up:attribution _:393405 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:393474 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:393475 a rdf:Statement ;
up:attribution _:393406 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:393476 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:393477 a rdf:Statement ;
up:attribution _:393407 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:393478 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:393479 a rdf:Statement ;
up:attribution _:393408 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:393480 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:393481 a rdf:Statement ;
up:attribution _:393409 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:393482 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:393483 a rdf:Statement ;
up:attribution _:393410 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:393484 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:393485 a rdf:Statement ;
up:attribution _:393411 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:393486 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:393487 a rdf:Statement ;
up:attribution _:393412 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:393488 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:393489 a rdf:Statement ;
up:attribution _:393413 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:393490 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:393491 a rdf:Statement ;
up:attribution _:393414 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:393492 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:393493 a rdf:Statement ;
up:attribution _:393415 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:393494 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs128 ;
rdf:predicate up:annotation ;
rdf:object ?annotation129 .
_:393495 a rdf:Statement ;
up:attribution _:393416 ;
rdf:subject ?pfs128 ;
rdf:predicate up:annotation ;
rdf:object ?annotation129 .
_:393496 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs134 ;
rdf:predicate up:annotation ;
rdf:object ?annotation135 .
_:393497 a rdf:Statement ;
up:attribution _:393417 ;
rdf:subject ?pfs134 ;
rdf:predicate up:annotation ;
rdf:object ?annotation135 .
_:393498 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs140 ;
rdf:predicate up:annotation ;
rdf:object ?annotation141 .
_:393499 a rdf:Statement ;
up:attribution _:393418 ;
rdf:subject ?pfs140 ;
rdf:predicate up:annotation ;
rdf:object ?annotation141 .
_:393500 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs146 ;
rdf:predicate up:annotation ;
rdf:object ?annotation147 .
_:393501 a rdf:Statement ;
up:attribution _:393419 ;
rdf:subject ?pfs146 ;
rdf:predicate up:annotation ;
rdf:object ?annotation147 .
_:393502 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs152 ;
rdf:predicate up:annotation ;
rdf:object ?annotation153 .
_:393503 a rdf:Statement ;
up:attribution _:393420 ;
rdf:subject ?pfs152 ;
rdf:predicate up:annotation ;
rdf:object ?annotation153 .
_:393504 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs158 ;
rdf:predicate up:annotation ;
rdf:object ?annotation159 .
_:393505 a rdf:Statement ;
up:attribution _:393421 ;
rdf:subject ?pfs158 ;
rdf:predicate up:annotation ;
rdf:object ?annotation159 .
_:393506 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs164 ;
rdf:predicate up:annotation ;
rdf:object ?annotation165 .
_:393507 a rdf:Statement ;
up:attribution _:393422 ;
rdf:subject ?pfs164 ;
rdf:predicate up:annotation ;
rdf:object ?annotation165 .
_:393508 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs170 ;
rdf:predicate up:annotation ;
rdf:object ?annotation171 .
_:393509 a rdf:Statement ;
up:attribution _:393423 ;
rdf:subject ?pfs170 ;
rdf:predicate up:annotation ;
rdf:object ?annotation171 .
_:393510 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs176 ;
rdf:predicate up:annotation ;
rdf:object ?annotation177 .
_:393511 a rdf:Statement ;
up:attribution _:393424 ;
rdf:subject ?pfs176 ;
rdf:predicate up:annotation ;
rdf:object ?annotation177 .
_:393512 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs182 ;
rdf:predicate up:annotation ;
rdf:object ?annotation183 .
_:393513 a rdf:Statement ;
up:attribution _:393425 ;
rdf:subject ?pfs182 ;
rdf:predicate up:annotation ;
rdf:object ?annotation183 .
_:393514 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs188 ;
rdf:predicate up:annotation ;
rdf:object ?annotation189 .
_:393515 a rdf:Statement ;
up:attribution _:393426 ;
rdf:subject ?pfs188 ;
rdf:predicate up:annotation ;
rdf:object ?annotation189 .
_:393516 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs194 ;
rdf:predicate up:annotation ;
rdf:object ?annotation195 .
_:393517 a rdf:Statement ;
up:attribution _:393427 ;
rdf:subject ?pfs194 ;
rdf:predicate up:annotation ;
rdf:object ?annotation195 .
_:393518 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs200 ;
rdf:predicate up:annotation ;
rdf:object ?annotation201 .
_:393519 a rdf:Statement ;
up:attribution _:393428 ;
rdf:subject ?pfs200 ;
rdf:predicate up:annotation ;
rdf:object ?annotation201 .
_:393520 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs206 ;
rdf:predicate up:annotation ;
rdf:object ?annotation207 .
_:393521 a rdf:Statement ;
up:attribution _:393429 ;
rdf:subject ?pfs206 ;
rdf:predicate up:annotation ;
rdf:object ?annotation207 .
_:393522 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs212 ;
rdf:predicate up:annotation ;
rdf:object ?annotation213 .
_:393523 a rdf:Statement ;
up:attribution _:393430 ;
rdf:subject ?pfs212 ;
rdf:predicate up:annotation ;
rdf:object ?annotation213 .
_:393524 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs218 ;
rdf:predicate up:annotation ;
rdf:object ?annotation219 .
_:393525 a rdf:Statement ;
up:attribution _:393431 ;
rdf:subject ?pfs218 ;
rdf:predicate up:annotation ;
rdf:object ?annotation219 .
_:393526 a rdf:Statement ;
up:source unirule:MF_01128 ;
rdf:subject ?pfs224 ;
rdf:predicate up:annotation ;
rdf:object ?annotation225 .
_:393527 a rdf:Statement ;
up:attribution _:393432 ;
rdf:subject ?pfs224 ;
rdf:predicate up:annotation ;
rdf:object ?annotation225 .
_:393528 a rdf:Statement ;
up:attribution _:393433 ;
rdf:subject ?sam230 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:393529 a rdf:Statement ;
up:attribution _:393434 ;
rdf:subject ?sam230 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:393530 a rdf:Statement ;
up:attribution _:393435 ;
rdf:subject ?sam230 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:393531 a rdf:Statement ;
up:attribution _:393436 ;
rdf:subject ?sam239 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:393532 a rdf:Statement ;
up:attribution _:393437 ;
rdf:subject ?sam239 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:393533 a rdf:Statement ;
up:attribution _:393438 ;
rdf:subject ?sam239 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01128
#Rule MF_01128 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01128 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01128a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch252 faldo:location ?templateMotifSequenceMatchRegionP37019253 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019255 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128248 .
?templateMotifSequenceMatchRegionP37019253 faldo:begin ?templateMotifSequenceMatchBeginP37019254 .
?templateMotifSequenceMatchBeginP37019254 faldo:position ?templateMotifSequenceMatchBeginPositionP37019249 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019255 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch256 faldo:location ?targetMotifMatchRegionMatch257 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128259 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128250 .
?targetMotifMatchRegionMatch257 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128258 .
?targetMotifMatchRegionMatchBeginMF_01128258 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128251 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128259 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128248, 1, (STRLEN(?templateMotifCigarP37019MF_01128248) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128248, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP37019249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128250, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128250) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128250, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128250) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_01128251) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch267 faldo:location ?templateMotifSequenceMatchRegionP37019268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128263 .
?templateMotifSequenceMatchRegionP37019268 faldo:begin ?templateMotifSequenceMatchBeginP37019269 .
?templateMotifSequenceMatchBeginP37019269 faldo:position ?templateMotifSequenceMatchBeginPositionP37019264 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019270 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch271 faldo:location ?targetMotifMatchRegionMatch272 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128274 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128265 .
?targetMotifMatchRegionMatch272 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128273 .
?targetMotifMatchRegionMatchBeginMF_01128273 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128266 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128274 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128263, 1, (STRLEN(?templateMotifCigarP37019MF_01128263) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128263, CONCAT('^(?:-*[^-]){', STR(((356 - ?templateMotifSequenceMatchBeginPositionP37019264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128265, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128265) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128265, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128265) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_01128266) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t277) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'I')) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch282 faldo:location ?templateMotifSequenceMatchRegionP37019283 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019285 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128278 .
?templateMotifSequenceMatchRegionP37019283 faldo:begin ?templateMotifSequenceMatchBeginP37019284 .
?templateMotifSequenceMatchBeginP37019284 faldo:position ?templateMotifSequenceMatchBeginPositionP37019279 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019285 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch286 faldo:location ?targetMotifMatchRegionMatch287 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128289 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128280 .
?targetMotifMatchRegionMatch287 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128288 .
?targetMotifMatchRegionMatchBeginMF_01128288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128281 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128289 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128278, 1, (STRLEN(?templateMotifCigarP37019MF_01128278) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128278, CONCAT('^(?:-*[^-]){', STR(((357 - ?templateMotifSequenceMatchBeginPositionP37019279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128280, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128280) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128280, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128280) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) .
BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_01128281) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t292) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch297 faldo:location ?templateMotifSequenceMatchRegionP37019298 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019300 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128293 .
?templateMotifSequenceMatchRegionP37019298 faldo:begin ?templateMotifSequenceMatchBeginP37019299 .
?templateMotifSequenceMatchBeginP37019299 faldo:position ?templateMotifSequenceMatchBeginPositionP37019294 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019300 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch301 faldo:location ?targetMotifMatchRegionMatch302 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128304 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128295 .
?targetMotifMatchRegionMatch302 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128303 .
?targetMotifMatchRegionMatchBeginMF_01128303 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128296 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128304 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128293, 1, (STRLEN(?templateMotifCigarP37019MF_01128293) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128293, CONCAT('^(?:-*[^-]){', STR(((445 - ?templateMotifSequenceMatchBeginPositionP37019294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1305) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128295, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128295) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128295, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128295) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), '')))), '[^-]', ''))) AS ?step2306) .
BIND(((?step2306 + ?targetMotifMatchRegionMatchBeginPositionMF_01128296) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t307) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch312 faldo:location ?templateMotifSequenceMatchRegionP37019313 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019315 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128308 .
?templateMotifSequenceMatchRegionP37019313 faldo:begin ?templateMotifSequenceMatchBeginP37019314 .
?templateMotifSequenceMatchBeginP37019314 faldo:position ?templateMotifSequenceMatchBeginPositionP37019309 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019315 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch316 faldo:location ?targetMotifMatchRegionMatch317 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128319 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128310 .
?targetMotifMatchRegionMatch317 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128318 .
?targetMotifMatchRegionMatchBeginMF_01128318 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128311 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128319 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128308, 1, (STRLEN(?templateMotifCigarP37019MF_01128308) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128308, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP37019309) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1320) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128310, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128310) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128310, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128310, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128310) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128310, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), '')))), '[^-]', ''))) AS ?step2321) .
BIND(((?step2321 + ?targetMotifMatchRegionMatchBeginPositionMF_01128311) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t322) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch327 faldo:location ?templateMotifSequenceMatchRegionP37019328 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019330 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128323 .
?templateMotifSequenceMatchRegionP37019328 faldo:begin ?templateMotifSequenceMatchBeginP37019329 .
?templateMotifSequenceMatchBeginP37019329 faldo:position ?templateMotifSequenceMatchBeginPositionP37019324 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019330 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch331 faldo:location ?targetMotifMatchRegionMatch332 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128334 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128325 .
?targetMotifMatchRegionMatch332 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128333 .
?targetMotifMatchRegionMatchBeginMF_01128333 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128326 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128334 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128323, 1, (STRLEN(?templateMotifCigarP37019MF_01128323) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128323, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP37019324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1335) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128325, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128325) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128325, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128325) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), '')))), '[^-]', ''))) AS ?step2336) .
BIND(((?step2336 + ?targetMotifMatchRegionMatchBeginPositionMF_01128326) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t337) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch343 faldo:location ?templateMotifSequenceMatchRegionP37019344 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019346 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128339 .
?templateMotifSequenceMatchRegionP37019344 faldo:begin ?templateMotifSequenceMatchBeginP37019345 .
?templateMotifSequenceMatchBeginP37019345 faldo:position ?templateMotifSequenceMatchBeginPositionP37019340 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019346 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch347 faldo:location ?targetMotifMatchRegionMatch348 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128350 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128341 .
?targetMotifMatchRegionMatch348 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128349 .
?targetMotifMatchRegionMatchBeginMF_01128349 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128342 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128350 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p338 .
?p338 skos:narrower .
}
BIND(1 AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128339, 1, (STRLEN(?templateMotifCigarP37019MF_01128339) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128339, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionP37019340) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1351) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128341, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128341) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128341, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128341) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), '')))), '[^-]', ''))) AS ?step2352) .
BIND(((?step2352 + ?targetMotifMatchRegionMatchBeginPositionMF_01128342) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t353) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER ((BOUND(?thisPositionOn54) && BOUND(?thisPositionOn55))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch359 faldo:location ?templateMotifSequenceMatchRegionP37019360 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019362 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128355 .
?templateMotifSequenceMatchRegionP37019360 faldo:begin ?templateMotifSequenceMatchBeginP37019361 .
?templateMotifSequenceMatchBeginP37019361 faldo:position ?templateMotifSequenceMatchBeginPositionP37019356 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019362 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch363 faldo:location ?targetMotifMatchRegionMatch364 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128366 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128357 .
?targetMotifMatchRegionMatch364 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128365 .
?targetMotifMatchRegionMatchBeginMF_01128365 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128358 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128366 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p354 .
?p354 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128355, 1, (STRLEN(?templateMotifCigarP37019MF_01128355) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128355, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP37019356) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1367) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128357, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128357) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128357, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128357) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), '')))), '[^-]', ''))) AS ?step2368) .
BIND(((?step2368 + ?targetMotifMatchRegionMatchBeginPositionMF_01128358) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128355, 1, (STRLEN(?templateMotifCigarP37019MF_01128355) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128355, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP37019356) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1369) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128357, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128357) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128357, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128357) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), '')))), '[^-]', ''))) AS ?step2370) .
BIND(((?step2370 + ?targetMotifMatchRegionMatchBeginPositionMF_01128358) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs2t371) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((BOUND(?thisPositionOn60) && BOUND(?thisPositionOn61))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch377 faldo:location ?templateMotifSequenceMatchRegionP37019378 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019380 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128373 .
?templateMotifSequenceMatchRegionP37019378 faldo:begin ?templateMotifSequenceMatchBeginP37019379 .
?templateMotifSequenceMatchBeginP37019379 faldo:position ?templateMotifSequenceMatchBeginPositionP37019374 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019380 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch381 faldo:location ?targetMotifMatchRegionMatch382 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128384 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128375 .
?targetMotifMatchRegionMatch382 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128383 .
?targetMotifMatchRegionMatchBeginMF_01128383 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128376 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128384 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p372 .
?p372 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128373, 1, (STRLEN(?templateMotifCigarP37019MF_01128373) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128373, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP37019374) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1385) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128375, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128375) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1385), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128375, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128375) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1385), '}'), '')))), '[^-]', ''))) AS ?step2386) .
BIND(((?step2386 + ?targetMotifMatchRegionMatchBeginPositionMF_01128376) - 1) AS ?thisPositionOn66) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128373, 1, (STRLEN(?templateMotifCigarP37019MF_01128373) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128373, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP37019374) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1387) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128375, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128375) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1387), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128375, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128375) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1387), '}'), '')))), '[^-]', ''))) AS ?step2388) .
BIND(((?step2388 + ?targetMotifMatchRegionMatchBeginPositionMF_01128376) - 1) AS ?thisPositionOn67) .
BIND(?this AS ?pfs2t389) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((BOUND(?thisPositionOn66) && BOUND(?thisPositionOn67))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch395 faldo:location ?templateMotifSequenceMatchRegionP37019396 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019398 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128391 .
?templateMotifSequenceMatchRegionP37019396 faldo:begin ?templateMotifSequenceMatchBeginP37019397 .
?templateMotifSequenceMatchBeginP37019397 faldo:position ?templateMotifSequenceMatchBeginPositionP37019392 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019398 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch399 faldo:location ?targetMotifMatchRegionMatch400 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128402 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128393 .
?targetMotifMatchRegionMatch400 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128401 .
?targetMotifMatchRegionMatchBeginMF_01128401 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128394 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128402 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p390 .
?p390 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128391, 1, (STRLEN(?templateMotifCigarP37019MF_01128391) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128391, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP37019392) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1403) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128393, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128393) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128393, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128393) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), '')))), '[^-]', ''))) AS ?step2404) .
BIND(((?step2404 + ?targetMotifMatchRegionMatchBeginPositionMF_01128394) - 1) AS ?thisPositionOn72) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128391, 1, (STRLEN(?templateMotifCigarP37019MF_01128391) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128391, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP37019392) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1405) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128393, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128393) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1405), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128393, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128393) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1405), '}'), '')))), '[^-]', ''))) AS ?step2406) .
BIND(((?step2406 + ?targetMotifMatchRegionMatchBeginPositionMF_01128394) - 1) AS ?thisPositionOn73) .
BIND(?this AS ?pfs2t407) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) .
FILTER ((BOUND(?thisPositionOn72) && BOUND(?thisPositionOn73))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch413 faldo:location ?templateMotifSequenceMatchRegionP37019414 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019416 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128409 .
?templateMotifSequenceMatchRegionP37019414 faldo:begin ?templateMotifSequenceMatchBeginP37019415 .
?templateMotifSequenceMatchBeginP37019415 faldo:position ?templateMotifSequenceMatchBeginPositionP37019410 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019416 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch417 faldo:location ?targetMotifMatchRegionMatch418 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128420 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128411 .
?targetMotifMatchRegionMatch418 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128419 .
?targetMotifMatchRegionMatchBeginMF_01128419 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128412 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128420 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p408 .
?p408 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128409, 1, (STRLEN(?templateMotifCigarP37019MF_01128409) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128409, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP37019410) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1421) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128411, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128411) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128411, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1421), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128411, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128411) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128411, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1421), '}'), '')))), '[^-]', ''))) AS ?step2422) .
BIND(((?step2422 + ?targetMotifMatchRegionMatchBeginPositionMF_01128412) - 1) AS ?thisPositionOn78) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128409, 1, (STRLEN(?templateMotifCigarP37019MF_01128409) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128409, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP37019410) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1423) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128411, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128411) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128411, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1423), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128411, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128411) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128411, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1423), '}'), '')))), '[^-]', ''))) AS ?step2424) .
BIND(((?step2424 + ?targetMotifMatchRegionMatchBeginPositionMF_01128412) - 1) AS ?thisPositionOn79) .
BIND(?this AS ?pfs2t425) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((BOUND(?thisPositionOn78) && BOUND(?thisPositionOn79))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch431 faldo:location ?templateMotifSequenceMatchRegionP37019432 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019434 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128427 .
?templateMotifSequenceMatchRegionP37019432 faldo:begin ?templateMotifSequenceMatchBeginP37019433 .
?templateMotifSequenceMatchBeginP37019433 faldo:position ?templateMotifSequenceMatchBeginPositionP37019428 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019434 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch435 faldo:location ?targetMotifMatchRegionMatch436 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128438 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128429 .
?targetMotifMatchRegionMatch436 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128437 .
?targetMotifMatchRegionMatchBeginMF_01128437 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128430 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128438 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p426 .
?p426 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128427, 1, (STRLEN(?templateMotifCigarP37019MF_01128427) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128427, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP37019428) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1439) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128429, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128429) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1439), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128429, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128429) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1439), '}'), '')))), '[^-]', ''))) AS ?step2440) .
BIND(((?step2440 + ?targetMotifMatchRegionMatchBeginPositionMF_01128430) - 1) AS ?thisPositionOn84) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128427, 1, (STRLEN(?templateMotifCigarP37019MF_01128427) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128427, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionP37019428) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1441) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128429, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128429) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1441), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128429, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128429) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1441), '}'), '')))), '[^-]', ''))) AS ?step2442) .
BIND(((?step2442 + ?targetMotifMatchRegionMatchBeginPositionMF_01128430) - 1) AS ?thisPositionOn85) .
BIND(?this AS ?pfs2t443) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) .
FILTER ((BOUND(?thisPositionOn84) && BOUND(?thisPositionOn85))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch449 faldo:location ?templateMotifSequenceMatchRegionP37019450 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019452 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128445 .
?templateMotifSequenceMatchRegionP37019450 faldo:begin ?templateMotifSequenceMatchBeginP37019451 .
?templateMotifSequenceMatchBeginP37019451 faldo:position ?templateMotifSequenceMatchBeginPositionP37019446 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019452 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch453 faldo:location ?targetMotifMatchRegionMatch454 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128456 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128447 .
?targetMotifMatchRegionMatch454 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128455 .
?targetMotifMatchRegionMatchBeginMF_01128455 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128448 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128456 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p444 .
?p444 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128445, 1, (STRLEN(?templateMotifCigarP37019MF_01128445) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128445, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP37019446) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1457) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128447, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128447) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1457), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128447, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128447) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1457), '}'), '')))), '[^-]', ''))) AS ?step2458) .
BIND(((?step2458 + ?targetMotifMatchRegionMatchBeginPositionMF_01128448) - 1) AS ?thisPositionOn90) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128445, 1, (STRLEN(?templateMotifCigarP37019MF_01128445) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128445, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionP37019446) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1459) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128447, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128447) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1459), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128447, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128447) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1459), '}'), '')))), '[^-]', ''))) AS ?step2460) .
BIND(((?step2460 + ?targetMotifMatchRegionMatchBeginPositionMF_01128448) - 1) AS ?thisPositionOn91) .
BIND(?this AS ?pfs2t461) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse89) .
FILTER ((BOUND(?thisPositionOn90) && BOUND(?thisPositionOn91))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch467 faldo:location ?templateMotifSequenceMatchRegionP37019468 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019470 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128463 .
?templateMotifSequenceMatchRegionP37019468 faldo:begin ?templateMotifSequenceMatchBeginP37019469 .
?templateMotifSequenceMatchBeginP37019469 faldo:position ?templateMotifSequenceMatchBeginPositionP37019464 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019470 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch471 faldo:location ?targetMotifMatchRegionMatch472 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128474 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128465 .
?targetMotifMatchRegionMatch472 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128473 .
?targetMotifMatchRegionMatchBeginMF_01128473 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128466 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128474 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p462 .
?p462 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128463, 1, (STRLEN(?templateMotifCigarP37019MF_01128463) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128463, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP37019464) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1475) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128465, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128465) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1475), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128465, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128465) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1475), '}'), '')))), '[^-]', ''))) AS ?step2476) .
BIND(((?step2476 + ?targetMotifMatchRegionMatchBeginPositionMF_01128466) - 1) AS ?thisPositionOn96) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128463, 1, (STRLEN(?templateMotifCigarP37019MF_01128463) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128463, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP37019464) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1477) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128465, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128465) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1477), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128465, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128465) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1477), '}'), '')))), '[^-]', ''))) AS ?step2478) .
BIND(((?step2478 + ?targetMotifMatchRegionMatchBeginPositionMF_01128466) - 1) AS ?thisPositionOn97) .
BIND(?this AS ?pfs2t479) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse95) .
FILTER ((BOUND(?thisPositionOn96) && BOUND(?thisPositionOn97))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch485 faldo:location ?templateMotifSequenceMatchRegionP37019486 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019488 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128481 .
?templateMotifSequenceMatchRegionP37019486 faldo:begin ?templateMotifSequenceMatchBeginP37019487 .
?templateMotifSequenceMatchBeginP37019487 faldo:position ?templateMotifSequenceMatchBeginPositionP37019482 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019488 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch489 faldo:location ?targetMotifMatchRegionMatch490 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128492 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128483 .
?targetMotifMatchRegionMatch490 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128491 .
?targetMotifMatchRegionMatchBeginMF_01128491 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128484 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128492 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p480 .
?p480 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128481, 1, (STRLEN(?templateMotifCigarP37019MF_01128481) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128481, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionP37019482) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1493) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128483, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128483) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128483, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1493), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128483, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128483) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128483, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1493), '}'), '')))), '[^-]', ''))) AS ?step2494) .
BIND(((?step2494 + ?targetMotifMatchRegionMatchBeginPositionMF_01128484) - 1) AS ?thisPositionOn102) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128481, 1, (STRLEN(?templateMotifCigarP37019MF_01128481) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128481, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP37019482) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1495) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128483, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128483) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128483, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1495), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128483, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128483) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128483, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1495), '}'), '')))), '[^-]', ''))) AS ?step2496) .
BIND(((?step2496 + ?targetMotifMatchRegionMatchBeginPositionMF_01128484) - 1) AS ?thisPositionOn103) .
BIND(?this AS ?pfs2t497) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse101) .
FILTER ((BOUND(?thisPositionOn102) && BOUND(?thisPositionOn103))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch503 faldo:location ?templateMotifSequenceMatchRegionP37019504 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019506 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128499 .
?templateMotifSequenceMatchRegionP37019504 faldo:begin ?templateMotifSequenceMatchBeginP37019505 .
?templateMotifSequenceMatchBeginP37019505 faldo:position ?templateMotifSequenceMatchBeginPositionP37019500 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019506 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch507 faldo:location ?targetMotifMatchRegionMatch508 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128510 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128501 .
?targetMotifMatchRegionMatch508 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128509 .
?targetMotifMatchRegionMatchBeginMF_01128509 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128502 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128510 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p498 .
?p498 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128499, 1, (STRLEN(?templateMotifCigarP37019MF_01128499) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128499, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP37019500) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1511) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128501, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128501) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128501, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1511), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128501, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128501) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128501, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1511), '}'), '')))), '[^-]', ''))) AS ?step2512) .
BIND(((?step2512 + ?targetMotifMatchRegionMatchBeginPositionMF_01128502) - 1) AS ?thisPositionOn108) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128499, 1, (STRLEN(?templateMotifCigarP37019MF_01128499) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128499, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP37019500) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1513) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128501, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128501) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128501, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1513), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128501, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128501) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128501, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1513), '}'), '')))), '[^-]', ''))) AS ?step2514) .
BIND(((?step2514 + ?targetMotifMatchRegionMatchBeginPositionMF_01128502) - 1) AS ?thisPositionOn109) .
BIND(?this AS ?pfs2t515) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse107) .
FILTER ((BOUND(?thisPositionOn108) && BOUND(?thisPositionOn109))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch521 faldo:location ?templateMotifSequenceMatchRegionP37019522 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019524 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128517 .
?templateMotifSequenceMatchRegionP37019522 faldo:begin ?templateMotifSequenceMatchBeginP37019523 .
?templateMotifSequenceMatchBeginP37019523 faldo:position ?templateMotifSequenceMatchBeginPositionP37019518 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019524 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch525 faldo:location ?targetMotifMatchRegionMatch526 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128528 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128519 .
?targetMotifMatchRegionMatch526 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128527 .
?targetMotifMatchRegionMatchBeginMF_01128527 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128520 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128528 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p516 .
?p516 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128517, 1, (STRLEN(?templateMotifCigarP37019MF_01128517) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128517, CONCAT('^(?:-*[^-]){', STR(((193 - ?templateMotifSequenceMatchBeginPositionP37019518) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1529) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128519, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128519) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128519, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1529), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128519, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128519) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128519, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1529), '}'), '')))), '[^-]', ''))) AS ?step2530) .
BIND(((?step2530 + ?targetMotifMatchRegionMatchBeginPositionMF_01128520) - 1) AS ?thisPositionOn114) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128517, 1, (STRLEN(?templateMotifCigarP37019MF_01128517) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128517, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP37019518) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1531) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128519, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128519) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128519, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1531), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128519, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128519) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128519, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1531), '}'), '')))), '[^-]', ''))) AS ?step2532) .
BIND(((?step2532 + ?targetMotifMatchRegionMatchBeginPositionMF_01128520) - 1) AS ?thisPositionOn115) .
BIND(?this AS ?pfs2t533) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse113) .
FILTER ((BOUND(?thisPositionOn114) && BOUND(?thisPositionOn115))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch539 faldo:location ?templateMotifSequenceMatchRegionP37019540 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019542 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128535 .
?templateMotifSequenceMatchRegionP37019540 faldo:begin ?templateMotifSequenceMatchBeginP37019541 .
?templateMotifSequenceMatchBeginP37019541 faldo:position ?templateMotifSequenceMatchBeginPositionP37019536 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019542 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch543 faldo:location ?targetMotifMatchRegionMatch544 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128546 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128537 .
?targetMotifMatchRegionMatch544 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128545 .
?targetMotifMatchRegionMatchBeginMF_01128545 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128538 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128546 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p534 .
?p534 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128535, 1, (STRLEN(?templateMotifCigarP37019MF_01128535) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128535, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP37019536) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1547) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128537, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128537) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1547), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128537, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128537) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1547), '}'), '')))), '[^-]', ''))) AS ?step2548) .
BIND(((?step2548 + ?targetMotifMatchRegionMatchBeginPositionMF_01128538) - 1) AS ?thisPositionOn120) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128535, 1, (STRLEN(?templateMotifCigarP37019MF_01128535) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128535, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionP37019536) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1549) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128537, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128537) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1549), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128537, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128537) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1549), '}'), '')))), '[^-]', ''))) AS ?step2550) .
BIND(((?step2550 + ?targetMotifMatchRegionMatchBeginPositionMF_01128538) - 1) AS ?thisPositionOn121) .
BIND(?this AS ?pfs2t551) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse119) .
FILTER ((BOUND(?thisPositionOn120) && BOUND(?thisPositionOn121))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a117')) AS ?annotation117) .
BIND(?this AS ?pfs116) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch557 faldo:location ?templateMotifSequenceMatchRegionP37019558 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019560 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128553 .
?templateMotifSequenceMatchRegionP37019558 faldo:begin ?templateMotifSequenceMatchBeginP37019559 .
?templateMotifSequenceMatchBeginP37019559 faldo:position ?templateMotifSequenceMatchBeginPositionP37019554 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019560 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch561 faldo:location ?targetMotifMatchRegionMatch562 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128564 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128555 .
?targetMotifMatchRegionMatch562 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128563 .
?targetMotifMatchRegionMatchBeginMF_01128563 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128556 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128564 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p552 .
?p552 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128553, 1, (STRLEN(?templateMotifCigarP37019MF_01128553) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128553, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP37019554) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1565) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128555, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128555) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128555, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1565), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128555, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128555) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128555, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1565), '}'), '')))), '[^-]', ''))) AS ?step2566) .
BIND(((?step2566 + ?targetMotifMatchRegionMatchBeginPositionMF_01128556) - 1) AS ?thisPositionOn126) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128553, 1, (STRLEN(?templateMotifCigarP37019MF_01128553) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128553, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP37019554) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1567) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128555, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128555) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128555, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1567), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128555, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128555) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128555, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1567), '}'), '')))), '[^-]', ''))) AS ?step2568) .
BIND(((?step2568 + ?targetMotifMatchRegionMatchBeginPositionMF_01128556) - 1) AS ?thisPositionOn127) .
BIND(?this AS ?pfs2t569) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse125) .
FILTER ((BOUND(?thisPositionOn126) && BOUND(?thisPositionOn127))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a123')) AS ?annotation123) .
BIND(?this AS ?pfs122) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch575 faldo:location ?templateMotifSequenceMatchRegionP37019576 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019578 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128571 .
?templateMotifSequenceMatchRegionP37019576 faldo:begin ?templateMotifSequenceMatchBeginP37019577 .
?templateMotifSequenceMatchBeginP37019577 faldo:position ?templateMotifSequenceMatchBeginPositionP37019572 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019578 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch579 faldo:location ?targetMotifMatchRegionMatch580 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128582 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128573 .
?targetMotifMatchRegionMatch580 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128581 .
?targetMotifMatchRegionMatchBeginMF_01128581 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128574 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128582 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p570 .
?p570 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128571, 1, (STRLEN(?templateMotifCigarP37019MF_01128571) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128571, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP37019572) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1583) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128573, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128573) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128573, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1583), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128573, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128573) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128573, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1583), '}'), '')))), '[^-]', ''))) AS ?step2584) .
BIND(((?step2584 + ?targetMotifMatchRegionMatchBeginPositionMF_01128574) - 1) AS ?thisPositionOn132) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128571, 1, (STRLEN(?templateMotifCigarP37019MF_01128571) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128571, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP37019572) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1585) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128573, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128573) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128573, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1585), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128573, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128573) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128573, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1585), '}'), '')))), '[^-]', ''))) AS ?step2586) .
BIND(((?step2586 + ?targetMotifMatchRegionMatchBeginPositionMF_01128574) - 1) AS ?thisPositionOn133) .
BIND(?this AS ?pfs2t587) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfsb130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfse131) .
FILTER ((BOUND(?thisPositionOn132) && BOUND(?thisPositionOn133))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a129')) AS ?annotation129) .
BIND(?this AS ?pfs128) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch593 faldo:location ?templateMotifSequenceMatchRegionP37019594 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019596 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128589 .
?templateMotifSequenceMatchRegionP37019594 faldo:begin ?templateMotifSequenceMatchBeginP37019595 .
?templateMotifSequenceMatchBeginP37019595 faldo:position ?templateMotifSequenceMatchBeginPositionP37019590 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019596 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch597 faldo:location ?targetMotifMatchRegionMatch598 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128600 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128591 .
?targetMotifMatchRegionMatch598 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128599 .
?targetMotifMatchRegionMatchBeginMF_01128599 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128592 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128600 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p588 .
?p588 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128589, 1, (STRLEN(?templateMotifCigarP37019MF_01128589) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128589, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionP37019590) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1601) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128591, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128591) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1601), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128591, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128591) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1601), '}'), '')))), '[^-]', ''))) AS ?step2602) .
BIND(((?step2602 + ?targetMotifMatchRegionMatchBeginPositionMF_01128592) - 1) AS ?thisPositionOn138) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128589, 1, (STRLEN(?templateMotifCigarP37019MF_01128589) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128589, CONCAT('^(?:-*[^-]){', STR(((281 - ?templateMotifSequenceMatchBeginPositionP37019590) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1603) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128591, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128591) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1603), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128591, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128591) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1603), '}'), '')))), '[^-]', ''))) AS ?step2604) .
BIND(((?step2604 + ?targetMotifMatchRegionMatchBeginPositionMF_01128592) - 1) AS ?thisPositionOn139) .
BIND(?this AS ?pfs2t605) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfsb136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfse137) .
FILTER ((BOUND(?thisPositionOn138) && BOUND(?thisPositionOn139))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a135')) AS ?annotation135) .
BIND(?this AS ?pfs134) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch611 faldo:location ?templateMotifSequenceMatchRegionP37019612 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019614 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128607 .
?templateMotifSequenceMatchRegionP37019612 faldo:begin ?templateMotifSequenceMatchBeginP37019613 .
?templateMotifSequenceMatchBeginP37019613 faldo:position ?templateMotifSequenceMatchBeginPositionP37019608 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019614 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch615 faldo:location ?targetMotifMatchRegionMatch616 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128618 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128609 .
?targetMotifMatchRegionMatch616 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128617 .
?targetMotifMatchRegionMatchBeginMF_01128617 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128610 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128618 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p606 .
?p606 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128607, 1, (STRLEN(?templateMotifCigarP37019MF_01128607) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128607, CONCAT('^(?:-*[^-]){', STR(((282 - ?templateMotifSequenceMatchBeginPositionP37019608) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1619) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128609, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128609) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128609, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1619), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128609, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128609) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128609, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1619), '}'), '')))), '[^-]', ''))) AS ?step2620) .
BIND(((?step2620 + ?targetMotifMatchRegionMatchBeginPositionMF_01128610) - 1) AS ?thisPositionOn144) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128607, 1, (STRLEN(?templateMotifCigarP37019MF_01128607) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128607, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionP37019608) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1621) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128609, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128609) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128609, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1621), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128609, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128609) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128609, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1621), '}'), '')))), '[^-]', ''))) AS ?step2622) .
BIND(((?step2622 + ?targetMotifMatchRegionMatchBeginPositionMF_01128610) - 1) AS ?thisPositionOn145) .
BIND(?this AS ?pfs2t623) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfsb142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfse143) .
FILTER ((BOUND(?thisPositionOn144) && BOUND(?thisPositionOn145))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a141')) AS ?annotation141) .
BIND(?this AS ?pfs140) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch629 faldo:location ?templateMotifSequenceMatchRegionP37019630 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019632 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128625 .
?templateMotifSequenceMatchRegionP37019630 faldo:begin ?templateMotifSequenceMatchBeginP37019631 .
?templateMotifSequenceMatchBeginP37019631 faldo:position ?templateMotifSequenceMatchBeginPositionP37019626 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019632 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch633 faldo:location ?targetMotifMatchRegionMatch634 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128636 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128627 .
?targetMotifMatchRegionMatch634 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128635 .
?targetMotifMatchRegionMatchBeginMF_01128635 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128628 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128636 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p624 .
?p624 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128625, 1, (STRLEN(?templateMotifCigarP37019MF_01128625) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128625, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionP37019626) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1637) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128627, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128627) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128627, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1637), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128627, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128627) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128627, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1637), '}'), '')))), '[^-]', ''))) AS ?step2638) .
BIND(((?step2638 + ?targetMotifMatchRegionMatchBeginPositionMF_01128628) - 1) AS ?thisPositionOn150) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128625, 1, (STRLEN(?templateMotifCigarP37019MF_01128625) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128625, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionP37019626) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1639) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128627, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128627) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128627, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1639), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128627, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128627) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128627, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1639), '}'), '')))), '[^-]', ''))) AS ?step2640) .
BIND(((?step2640 + ?targetMotifMatchRegionMatchBeginPositionMF_01128628) - 1) AS ?thisPositionOn151) .
BIND(?this AS ?pfs2t641) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn150))) AS ?pfsb148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfse149) .
FILTER ((BOUND(?thisPositionOn150) && BOUND(?thisPositionOn151))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a147')) AS ?annotation147) .
BIND(?this AS ?pfs146) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch647 faldo:location ?templateMotifSequenceMatchRegionP37019648 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019650 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128643 .
?templateMotifSequenceMatchRegionP37019648 faldo:begin ?templateMotifSequenceMatchBeginP37019649 .
?templateMotifSequenceMatchBeginP37019649 faldo:position ?templateMotifSequenceMatchBeginPositionP37019644 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019650 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch651 faldo:location ?targetMotifMatchRegionMatch652 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128654 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128645 .
?targetMotifMatchRegionMatch652 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128653 .
?targetMotifMatchRegionMatchBeginMF_01128653 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128646 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128654 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p642 .
?p642 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128643, 1, (STRLEN(?templateMotifCigarP37019MF_01128643) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128643, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionP37019644) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1655) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128645, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128645) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128645, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1655), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128645, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128645) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128645, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1655), '}'), '')))), '[^-]', ''))) AS ?step2656) .
BIND(((?step2656 + ?targetMotifMatchRegionMatchBeginPositionMF_01128646) - 1) AS ?thisPositionOn156) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128643, 1, (STRLEN(?templateMotifCigarP37019MF_01128643) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128643, CONCAT('^(?:-*[^-]){', STR(((329 - ?templateMotifSequenceMatchBeginPositionP37019644) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1657) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128645, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128645) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128645, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1657), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128645, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128645) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128645, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1657), '}'), '')))), '[^-]', ''))) AS ?step2658) .
BIND(((?step2658 + ?targetMotifMatchRegionMatchBeginPositionMF_01128646) - 1) AS ?thisPositionOn157) .
BIND(?this AS ?pfs2t659) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn156))) AS ?pfsb154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn157))) AS ?pfse155) .
FILTER ((BOUND(?thisPositionOn156) && BOUND(?thisPositionOn157))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a153')) AS ?annotation153) .
BIND(?this AS ?pfs152) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch665 faldo:location ?templateMotifSequenceMatchRegionP37019666 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019668 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128661 .
?templateMotifSequenceMatchRegionP37019666 faldo:begin ?templateMotifSequenceMatchBeginP37019667 .
?templateMotifSequenceMatchBeginP37019667 faldo:position ?templateMotifSequenceMatchBeginPositionP37019662 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019668 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch669 faldo:location ?targetMotifMatchRegionMatch670 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128672 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128663 .
?targetMotifMatchRegionMatch670 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128671 .
?targetMotifMatchRegionMatchBeginMF_01128671 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128664 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128672 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p660 .
?p660 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128661, 1, (STRLEN(?templateMotifCigarP37019MF_01128661) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128661, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionP37019662) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1673) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128663, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128663) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1673), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128663, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128663) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1673), '}'), '')))), '[^-]', ''))) AS ?step2674) .
BIND(((?step2674 + ?targetMotifMatchRegionMatchBeginPositionMF_01128664) - 1) AS ?thisPositionOn162) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128661, 1, (STRLEN(?templateMotifCigarP37019MF_01128661) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128661, CONCAT('^(?:-*[^-]){', STR(((349 - ?templateMotifSequenceMatchBeginPositionP37019662) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1675) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128663, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128663) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1675), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128663, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128663) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1675), '}'), '')))), '[^-]', ''))) AS ?step2676) .
BIND(((?step2676 + ?targetMotifMatchRegionMatchBeginPositionMF_01128664) - 1) AS ?thisPositionOn163) .
BIND(?this AS ?pfs2t677) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn162))) AS ?pfsb160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn163))) AS ?pfse161) .
FILTER ((BOUND(?thisPositionOn162) && BOUND(?thisPositionOn163))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a159')) AS ?annotation159) .
BIND(?this AS ?pfs158) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch683 faldo:location ?templateMotifSequenceMatchRegionP37019684 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019686 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128679 .
?templateMotifSequenceMatchRegionP37019684 faldo:begin ?templateMotifSequenceMatchBeginP37019685 .
?templateMotifSequenceMatchBeginP37019685 faldo:position ?templateMotifSequenceMatchBeginPositionP37019680 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019686 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch687 faldo:location ?targetMotifMatchRegionMatch688 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128690 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128681 .
?targetMotifMatchRegionMatch688 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128689 .
?targetMotifMatchRegionMatchBeginMF_01128689 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128682 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128690 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p678 .
?p678 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128679, 1, (STRLEN(?templateMotifCigarP37019MF_01128679) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128679, CONCAT('^(?:-*[^-]){', STR(((355 - ?templateMotifSequenceMatchBeginPositionP37019680) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1691) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128681, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128681) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1691), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128681, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128681) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1691), '}'), '')))), '[^-]', ''))) AS ?step2692) .
BIND(((?step2692 + ?targetMotifMatchRegionMatchBeginPositionMF_01128682) - 1) AS ?thisPositionOn168) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128679, 1, (STRLEN(?templateMotifCigarP37019MF_01128679) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128679, CONCAT('^(?:-*[^-]){', STR(((376 - ?templateMotifSequenceMatchBeginPositionP37019680) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1693) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128681, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128681) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1693), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128681, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128681) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1693), '}'), '')))), '[^-]', ''))) AS ?step2694) .
BIND(((?step2694 + ?targetMotifMatchRegionMatchBeginPositionMF_01128682) - 1) AS ?thisPositionOn169) .
BIND(?this AS ?pfs2t695) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn168))) AS ?pfsb166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn169))) AS ?pfse167) .
FILTER ((BOUND(?thisPositionOn168) && BOUND(?thisPositionOn169))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a165')) AS ?annotation165) .
BIND(?this AS ?pfs164) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch701 faldo:location ?templateMotifSequenceMatchRegionP37019702 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019704 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128697 .
?templateMotifSequenceMatchRegionP37019702 faldo:begin ?templateMotifSequenceMatchBeginP37019703 .
?templateMotifSequenceMatchBeginP37019703 faldo:position ?templateMotifSequenceMatchBeginPositionP37019698 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019704 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch705 faldo:location ?targetMotifMatchRegionMatch706 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128708 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128699 .
?targetMotifMatchRegionMatch706 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128707 .
?targetMotifMatchRegionMatchBeginMF_01128707 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128700 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128708 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p696 .
?p696 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128697, 1, (STRLEN(?templateMotifCigarP37019MF_01128697) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128697, CONCAT('^(?:-*[^-]){', STR(((377 - ?templateMotifSequenceMatchBeginPositionP37019698) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1709) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128699, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128699) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1709), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128699, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128699) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1709), '}'), '')))), '[^-]', ''))) AS ?step2710) .
BIND(((?step2710 + ?targetMotifMatchRegionMatchBeginPositionMF_01128700) - 1) AS ?thisPositionOn174) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128697, 1, (STRLEN(?templateMotifCigarP37019MF_01128697) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128697, CONCAT('^(?:-*[^-]){', STR(((386 - ?templateMotifSequenceMatchBeginPositionP37019698) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1711) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128699, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128699) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1711), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128699, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128699) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1711), '}'), '')))), '[^-]', ''))) AS ?step2712) .
BIND(((?step2712 + ?targetMotifMatchRegionMatchBeginPositionMF_01128700) - 1) AS ?thisPositionOn175) .
BIND(?this AS ?pfs2t713) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn174))) AS ?pfsb172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn175))) AS ?pfse173) .
FILTER ((BOUND(?thisPositionOn174) && BOUND(?thisPositionOn175))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a171')) AS ?annotation171) .
BIND(?this AS ?pfs170) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch719 faldo:location ?templateMotifSequenceMatchRegionP37019720 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019722 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128715 .
?templateMotifSequenceMatchRegionP37019720 faldo:begin ?templateMotifSequenceMatchBeginP37019721 .
?templateMotifSequenceMatchBeginP37019721 faldo:position ?templateMotifSequenceMatchBeginPositionP37019716 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019722 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch723 faldo:location ?targetMotifMatchRegionMatch724 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128726 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128717 .
?targetMotifMatchRegionMatch724 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128725 .
?targetMotifMatchRegionMatchBeginMF_01128725 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128718 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128726 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p714 .
?p714 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128715, 1, (STRLEN(?templateMotifCigarP37019MF_01128715) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128715, CONCAT('^(?:-*[^-]){', STR(((387 - ?templateMotifSequenceMatchBeginPositionP37019716) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1727) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128717, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128717) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128717, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1727), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128717, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128717) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128717, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1727), '}'), '')))), '[^-]', ''))) AS ?step2728) .
BIND(((?step2728 + ?targetMotifMatchRegionMatchBeginPositionMF_01128718) - 1) AS ?thisPositionOn180) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128715, 1, (STRLEN(?templateMotifCigarP37019MF_01128715) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128715, CONCAT('^(?:-*[^-]){', STR(((401 - ?templateMotifSequenceMatchBeginPositionP37019716) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1729) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128717, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128717) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128717, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1729), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128717, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128717) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128717, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1729), '}'), '')))), '[^-]', ''))) AS ?step2730) .
BIND(((?step2730 + ?targetMotifMatchRegionMatchBeginPositionMF_01128718) - 1) AS ?thisPositionOn181) .
BIND(?this AS ?pfs2t731) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn180))) AS ?pfsb178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn181))) AS ?pfse179) .
FILTER ((BOUND(?thisPositionOn180) && BOUND(?thisPositionOn181))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a177')) AS ?annotation177) .
BIND(?this AS ?pfs176) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch737 faldo:location ?templateMotifSequenceMatchRegionP37019738 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019740 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128733 .
?templateMotifSequenceMatchRegionP37019738 faldo:begin ?templateMotifSequenceMatchBeginP37019739 .
?templateMotifSequenceMatchBeginP37019739 faldo:position ?templateMotifSequenceMatchBeginPositionP37019734 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019740 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch741 faldo:location ?targetMotifMatchRegionMatch742 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128744 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128735 .
?targetMotifMatchRegionMatch742 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128743 .
?targetMotifMatchRegionMatchBeginMF_01128743 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128736 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128744 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p732 .
?p732 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128733, 1, (STRLEN(?templateMotifCigarP37019MF_01128733) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128733, CONCAT('^(?:-*[^-]){', STR(((402 - ?templateMotifSequenceMatchBeginPositionP37019734) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1745) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128735, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128735) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1745), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128735, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128735) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1745), '}'), '')))), '[^-]', ''))) AS ?step2746) .
BIND(((?step2746 + ?targetMotifMatchRegionMatchBeginPositionMF_01128736) - 1) AS ?thisPositionOn186) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128733, 1, (STRLEN(?templateMotifCigarP37019MF_01128733) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128733, CONCAT('^(?:-*[^-]){', STR(((404 - ?templateMotifSequenceMatchBeginPositionP37019734) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1747) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128735, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128735) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1747), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128735, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128735) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1747), '}'), '')))), '[^-]', ''))) AS ?step2748) .
BIND(((?step2748 + ?targetMotifMatchRegionMatchBeginPositionMF_01128736) - 1) AS ?thisPositionOn187) .
BIND(?this AS ?pfs2t749) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn186))) AS ?pfsb184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn187))) AS ?pfse185) .
FILTER ((BOUND(?thisPositionOn186) && BOUND(?thisPositionOn187))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a183')) AS ?annotation183) .
BIND(?this AS ?pfs182) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch755 faldo:location ?templateMotifSequenceMatchRegionP37019756 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019758 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128751 .
?templateMotifSequenceMatchRegionP37019756 faldo:begin ?templateMotifSequenceMatchBeginP37019757 .
?templateMotifSequenceMatchBeginP37019757 faldo:position ?templateMotifSequenceMatchBeginPositionP37019752 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019758 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch759 faldo:location ?targetMotifMatchRegionMatch760 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128762 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128753 .
?targetMotifMatchRegionMatch760 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128761 .
?targetMotifMatchRegionMatchBeginMF_01128761 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128754 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128762 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p750 .
?p750 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128751, 1, (STRLEN(?templateMotifCigarP37019MF_01128751) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128751, CONCAT('^(?:-*[^-]){', STR(((405 - ?templateMotifSequenceMatchBeginPositionP37019752) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1763) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128753, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128753) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128753, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1763), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128753, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128753) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128753, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1763), '}'), '')))), '[^-]', ''))) AS ?step2764) .
BIND(((?step2764 + ?targetMotifMatchRegionMatchBeginPositionMF_01128754) - 1) AS ?thisPositionOn192) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128751, 1, (STRLEN(?templateMotifCigarP37019MF_01128751) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128751, CONCAT('^(?:-*[^-]){', STR(((416 - ?templateMotifSequenceMatchBeginPositionP37019752) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1765) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128753, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128753) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128753, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1765), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128753, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128753) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128753, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1765), '}'), '')))), '[^-]', ''))) AS ?step2766) .
BIND(((?step2766 + ?targetMotifMatchRegionMatchBeginPositionMF_01128754) - 1) AS ?thisPositionOn193) .
BIND(?this AS ?pfs2t767) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn192))) AS ?pfsb190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn193))) AS ?pfse191) .
FILTER ((BOUND(?thisPositionOn192) && BOUND(?thisPositionOn193))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a189')) AS ?annotation189) .
BIND(?this AS ?pfs188) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch773 faldo:location ?templateMotifSequenceMatchRegionP37019774 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019776 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128769 .
?templateMotifSequenceMatchRegionP37019774 faldo:begin ?templateMotifSequenceMatchBeginP37019775 .
?templateMotifSequenceMatchBeginP37019775 faldo:position ?templateMotifSequenceMatchBeginPositionP37019770 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019776 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch777 faldo:location ?targetMotifMatchRegionMatch778 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128780 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128771 .
?targetMotifMatchRegionMatch778 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128779 .
?targetMotifMatchRegionMatchBeginMF_01128779 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128772 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128780 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p768 .
?p768 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128769, 1, (STRLEN(?templateMotifCigarP37019MF_01128769) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128769, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP37019770) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1781) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128771, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128771) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128771, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1781), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128771, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128771) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128771, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1781), '}'), '')))), '[^-]', ''))) AS ?step2782) .
BIND(((?step2782 + ?targetMotifMatchRegionMatchBeginPositionMF_01128772) - 1) AS ?thisPositionOn198) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128769, 1, (STRLEN(?templateMotifCigarP37019MF_01128769) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128769, CONCAT('^(?:-*[^-]){', STR(((421 - ?templateMotifSequenceMatchBeginPositionP37019770) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1783) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128771, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128771) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128771, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1783), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128771, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128771) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128771, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1783), '}'), '')))), '[^-]', ''))) AS ?step2784) .
BIND(((?step2784 + ?targetMotifMatchRegionMatchBeginPositionMF_01128772) - 1) AS ?thisPositionOn199) .
BIND(?this AS ?pfs2t785) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn198))) AS ?pfsb196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn199))) AS ?pfse197) .
FILTER ((BOUND(?thisPositionOn198) && BOUND(?thisPositionOn199))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a195')) AS ?annotation195) .
BIND(?this AS ?pfs194) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch791 faldo:location ?templateMotifSequenceMatchRegionP37019792 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019794 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128787 .
?templateMotifSequenceMatchRegionP37019792 faldo:begin ?templateMotifSequenceMatchBeginP37019793 .
?templateMotifSequenceMatchBeginP37019793 faldo:position ?templateMotifSequenceMatchBeginPositionP37019788 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019794 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch795 faldo:location ?targetMotifMatchRegionMatch796 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128798 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128789 .
?targetMotifMatchRegionMatch796 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128797 .
?targetMotifMatchRegionMatchBeginMF_01128797 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128790 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128798 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p786 .
?p786 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128787, 1, (STRLEN(?templateMotifCigarP37019MF_01128787) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128787, CONCAT('^(?:-*[^-]){', STR(((422 - ?templateMotifSequenceMatchBeginPositionP37019788) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1799) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128789, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128789) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1799), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128789, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128789) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1799), '}'), '')))), '[^-]', ''))) AS ?step2800) .
BIND(((?step2800 + ?targetMotifMatchRegionMatchBeginPositionMF_01128790) - 1) AS ?thisPositionOn204) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128787, 1, (STRLEN(?templateMotifCigarP37019MF_01128787) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128787, CONCAT('^(?:-*[^-]){', STR(((438 - ?templateMotifSequenceMatchBeginPositionP37019788) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1801) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128789, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128789) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1801), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128789, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128789) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1801), '}'), '')))), '[^-]', ''))) AS ?step2802) .
BIND(((?step2802 + ?targetMotifMatchRegionMatchBeginPositionMF_01128790) - 1) AS ?thisPositionOn205) .
BIND(?this AS ?pfs2t803) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn204))) AS ?pfsb202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn205))) AS ?pfse203) .
FILTER ((BOUND(?thisPositionOn204) && BOUND(?thisPositionOn205))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a201')) AS ?annotation201) .
BIND(?this AS ?pfs200) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch809 faldo:location ?templateMotifSequenceMatchRegionP37019810 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019812 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128805 .
?templateMotifSequenceMatchRegionP37019810 faldo:begin ?templateMotifSequenceMatchBeginP37019811 .
?templateMotifSequenceMatchBeginP37019811 faldo:position ?templateMotifSequenceMatchBeginPositionP37019806 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019812 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch813 faldo:location ?targetMotifMatchRegionMatch814 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128816 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128807 .
?targetMotifMatchRegionMatch814 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128815 .
?targetMotifMatchRegionMatchBeginMF_01128815 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128808 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128816 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p804 .
?p804 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128805, 1, (STRLEN(?templateMotifCigarP37019MF_01128805) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128805, CONCAT('^(?:-*[^-]){', STR(((439 - ?templateMotifSequenceMatchBeginPositionP37019806) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1817) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128807, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128807) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128807, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1817), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128807, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128807) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128807, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1817), '}'), '')))), '[^-]', ''))) AS ?step2818) .
BIND(((?step2818 + ?targetMotifMatchRegionMatchBeginPositionMF_01128808) - 1) AS ?thisPositionOn210) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn211) .
BIND(?this AS ?pfs2t819) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn210))) AS ?pfsb208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn211))) AS ?pfse209) .
FILTER ((BOUND(?thisPositionOn210) && BOUND(?thisPositionOn211))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a207')) AS ?annotation207) .
BIND(?this AS ?pfs206) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch825 faldo:location ?templateMotifSequenceMatchRegionP37019826 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019828 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128821 .
?templateMotifSequenceMatchRegionP37019826 faldo:begin ?templateMotifSequenceMatchBeginP37019827 .
?templateMotifSequenceMatchBeginP37019827 faldo:position ?templateMotifSequenceMatchBeginPositionP37019822 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019828 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch829 faldo:location ?targetMotifMatchRegionMatch830 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128832 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128823 .
?targetMotifMatchRegionMatch830 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128831 .
?targetMotifMatchRegionMatchBeginMF_01128831 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128824 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128832 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p820 .
?p820 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128821, 1, (STRLEN(?templateMotifCigarP37019MF_01128821) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128821, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP37019822) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1833) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128823, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128823) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128823, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1833), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128823, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128823) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128823, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1833), '}'), '')))), '[^-]', ''))) AS ?step2834) .
BIND(((?step2834 + ?targetMotifMatchRegionMatchBeginPositionMF_01128824) - 1) AS ?thisPositionOn216) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128821, 1, (STRLEN(?templateMotifCigarP37019MF_01128821) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128821, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionP37019822) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1835) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128823, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128823) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128823, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1835), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128823, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128823) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128823, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1835), '}'), '')))), '[^-]', ''))) AS ?step2836) .
BIND(((?step2836 + ?targetMotifMatchRegionMatchBeginPositionMF_01128824) - 1) AS ?thisPositionOn217) .
BIND(?this AS ?pfs2t837) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn216))) AS ?pfsb214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn217))) AS ?pfse215) .
FILTER ((BOUND(?thisPositionOn216) && BOUND(?thisPositionOn217))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a213')) AS ?annotation213) .
BIND(?this AS ?pfs212) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch843 faldo:location ?templateMotifSequenceMatchRegionP37019844 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019846 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128839 .
?templateMotifSequenceMatchRegionP37019844 faldo:begin ?templateMotifSequenceMatchBeginP37019845 .
?templateMotifSequenceMatchBeginP37019845 faldo:position ?templateMotifSequenceMatchBeginPositionP37019840 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019846 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch847 faldo:location ?targetMotifMatchRegionMatch848 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128850 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128841 .
?targetMotifMatchRegionMatch848 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128849 .
?targetMotifMatchRegionMatchBeginMF_01128849 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128842 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128850 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p838 .
?p838 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128839, 1, (STRLEN(?templateMotifCigarP37019MF_01128839) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128839, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionP37019840) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1851) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128841, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128841) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128841, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1851), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128841, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128841) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128841, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1851), '}'), '')))), '[^-]', ''))) AS ?step2852) .
BIND(((?step2852 + ?targetMotifMatchRegionMatchBeginPositionMF_01128842) - 1) AS ?thisPositionOn222) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128839, 1, (STRLEN(?templateMotifCigarP37019MF_01128839) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128839, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP37019840) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1853) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128841, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128841) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128841, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1853), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128841, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128841) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128841, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1853), '}'), '')))), '[^-]', ''))) AS ?step2854) .
BIND(((?step2854 + ?targetMotifMatchRegionMatchBeginPositionMF_01128842) - 1) AS ?thisPositionOn223) .
BIND(?this AS ?pfs2t855) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn222))) AS ?pfsb220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn223))) AS ?pfse221) .
FILTER ((BOUND(?thisPositionOn222) && BOUND(?thisPositionOn223))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a219')) AS ?annotation219) .
BIND(?this AS ?pfs218) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch861 faldo:location ?templateMotifSequenceMatchRegionP37019862 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37019864 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37019MF_01128857 .
?templateMotifSequenceMatchRegionP37019862 faldo:begin ?templateMotifSequenceMatchBeginP37019863 .
?templateMotifSequenceMatchBeginP37019863 faldo:position ?templateMotifSequenceMatchBeginPositionP37019858 ;
faldo:reference isoform:P37019-1 .
?templateMotifSequenceProfileAlignmentOperationP37019864 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch865 faldo:location ?targetMotifMatchRegionMatch866 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01128868 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37019MF_01128859 .
?targetMotifMatchRegionMatch866 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01128867 .
?targetMotifMatchRegionMatchBeginMF_01128867 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01128860 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01128868 edam:has_input signature:MF_01128 ;
rdf:type edam:operation_0300 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p856 .
?p856 skos:narrower .
}
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128857, 1, (STRLEN(?templateMotifCigarP37019MF_01128857) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128857, CONCAT('^(?:-*[^-]){', STR(((355 - ?templateMotifSequenceMatchBeginPositionP37019858) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1869) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128859, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128859) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1869), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128859, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128859) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1869), '}'), '')))), '[^-]', ''))) AS ?step2870) .
BIND(((?step2870 + ?targetMotifMatchRegionMatchBeginPositionMF_01128860) - 1) AS ?thisPositionOn228) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37019MF_01128857, 1, (STRLEN(?templateMotifCigarP37019MF_01128857) - STRLEN(REPLACE(?templateMotifCigarP37019MF_01128857, CONCAT('^(?:-*[^-]){', STR(((359 - ?templateMotifSequenceMatchBeginPositionP37019858) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1871) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37019MF_01128859, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128859) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1871), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37019MF_01128859, 1, (STRLEN(?targetMotifMatchCigarP37019MF_01128859) - STRLEN(REPLACE(?targetMotifMatchCigarP37019MF_01128859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1871), '}'), '')))), '[^-]', ''))) AS ?step2872) .
BIND(((?step2872 + ?targetMotifMatchRegionMatchBeginPositionMF_01128860) - 1) AS ?thisPositionOn229) .
BIND(?this AS ?pfs2t873) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn228))) AS ?pfsb226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn229))) AS ?pfse227) .
FILTER ((BOUND(?thisPositionOn228) && BOUND(?thisPositionOn229))) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a225')) AS ?annotation225) .
BIND(?this AS ?pfs224) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:91347 .
})) .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p874 .
?p874 skos:narrower .
}
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p875 .
?p875 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p876 .
?p876 skos:narrower .
}
}
BIND(?this AS ?case9) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane877 ;
up:sequence ?thisSequence .
?samtransmembrane877 up:range ?samtransmembraner878 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner878 faldo:begin ?samtransmembraneb879 ;
faldo:end ?samtransmembranee880 .
?samtransmembraneb879 faldo:position ?samtransmembranebp881 ;
faldo:reference ?thisSequence .
?samtransmembranee880 faldo:position ?samtransmembraneep882 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam230) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01128a236')) AS ?keyword236) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a237')) AS ?keyword237) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a238')) AS ?keyword238) .
OPTIONAL {
?this up:annotation ?samtransmembrane883 ;
up:sequence ?thisSequence .
?samtransmembrane883 up:range ?samtransmembraner884 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner884 faldo:begin ?samtransmembraneb885 ;
faldo:end ?samtransmembranee886 .
?samtransmembraneb885 faldo:position ?samtransmembranebp887 ;
faldo:reference ?thisSequence .
?samtransmembranee886 faldo:position ?samtransmembraneep888 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam239) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01128a245')) AS ?keyword245) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a246')) AS ?keyword246) .
BIND(URI(CONCAT(STR(?this), '#MF_01128a247')) AS ?keyword247) .
}
"xsd:string |
