| http://purl.uniprot.org/unirules/MF_04083#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:939411 up:source unirule:MF_04083 .
_:939412 up:source unirule:MF_04083 .
_:939413 up:source unirule:MF_04083 .
_:939414 up:fullName 'Surface protein gp120' ;
up:shortName 'SU' ;
rdf:type up:Structured_Name .
_:939415 up:fullName 'Glycoprotein 120' ;
up:shortName 'gp120' ;
rdf:type up:Structured_Name .
_:939416 up:source unirule:MF_04083 .
_:939417 up:fullName 'Transmembrane protein gp41' ;
up:shortName 'TM' ;
rdf:type up:Structured_Name .
_:939418 up:fullName 'Glycoprotein 41' ;
up:shortName 'gp41' ;
rdf:type up:Structured_Name .
_:939419 up:source unirule:MF_04083 .
_:939420 up:source unirule:MF_04083 .
_:939421 up:source unirule:MF_04083 .
_:939422 up:source unirule:MF_04083 .
_:939423 up:source unirule:MF_04083 .
_:939424 up:source unirule:MF_04083 .
_:939425 up:source unirule:MF_04083 .
_:939426 up:source unirule:MF_04083 .
_:939427 up:source unirule:MF_04083 .
_:939428 up:source unirule:MF_04083 .
_:939429 up:source unirule:MF_04083 .
_:939430 up:source unirule:MF_04083 .
_:939431 up:source unirule:MF_04083 .
_:939432 up:source unirule:MF_04083 .
_:939433 up:source unirule:MF_04083 .
_:939434 up:source unirule:MF_04083 .
_:939435 up:source unirule:MF_04083 .
_:939436 up:source unirule:MF_04083 .
_:939437 up:source unirule:MF_04083 .
_:939438 up:source unirule:MF_04083 .
_:939439 up:source unirule:MF_04083 .
_:939440 up:source unirule:MF_04083 .
_:939441 up:source unirule:MF_04083 .
_:939442 up:source unirule:MF_04083 .
_:939443 up:source unirule:MF_04083 .
_:939444 up:source unirule:MF_04083 .
_:939445 up:source unirule:MF_04083 .
_:939446 up:source unirule:MF_04083 .
_:939447 up:source unirule:MF_04083 .
_:939448 up:source unirule:MF_04083 .
_:939449 up:source unirule:MF_04083 .
_:939450 up:source unirule:MF_04083 .
_:939451 up:source unirule:MF_04083 .
_:939452 up:source unirule:MF_04083 .
_:939453 up:source unirule:MF_04083 .
_:939454 up:source unirule:MF_04083 .
_:939455 up:source unirule:MF_04083 .
_:939456 up:source unirule:MF_04083 .
_:939457 up:source unirule:MF_04083 .
_:939458 up:source unirule:MF_04083 .
_:939459 up:source unirule:MF_04083 .
_:939460 up:source unirule:MF_04083 .
_:939461 up:source unirule:MF_04083 .
_:939462 up:source unirule:MF_04083 .
_:939463 up:source unirule:MF_04083 .
_:939464 up:source unirule:MF_04083 .
_:939465 up:source unirule:MF_04083 .
_:939466 up:source unirule:MF_04083 .
_:939467 up:source unirule:MF_04083 .
_:939468 up:source unirule:MF_04083 .
_:939469 up:source unirule:MF_04083 .
_:939470 up:source unirule:MF_04083 .
_:939471 up:source unirule:MF_04083 .
_:939472 up:source unirule:MF_04083 .
_:939473 up:source unirule:MF_04083 .
_:939474 up:source unirule:MF_04083 .
_:939475 up:source unirule:MF_04083 .
_:939476 up:source unirule:MF_04083 .
_:939477 up:source unirule:MF_04083 .
_:939478 up:source unirule:MF_04083 .
_:939479 up:source unirule:MF_04083 .
_:939480 up:source unirule:MF_04083 .
_:939481 up:source unirule:MF_04083 .
_:939482 up:source unirule:MF_04083 .
_:939483 up:source unirule:MF_04083 .
_:939484 up:source unirule:MF_04083 .
_:939485 up:source unirule:MF_04083 .
_:939486 up:source unirule:MF_04083 .
_:939487 up:source unirule:MF_04083 .
_:939488 up:source unirule:MF_04083 .
_:939489 up:source unirule:MF_04083 .
_:939490 up:source unirule:MF_04083 .
_:939491 up:source unirule:MF_04083 .
_:939492 up:source unirule:MF_04083 .
_:939493 up:source unirule:MF_04083 .
_:939494 up:source unirule:MF_04083 .
_:939495 up:source unirule:MF_04083 .
_:939496 up:source unirule:MF_04083 .
_:939497 up:source unirule:MF_04083 .
_:939498 up:source unirule:MF_04083 .
_:939499 up:source unirule:MF_04083 .
_:939500 up:source unirule:MF_04083 .
_:939501 up:source unirule:MF_04083 .
_:939502 up:source unirule:MF_04083 .
_:939503 up:source unirule:MF_04083 .
_:939504 up:source unirule:MF_04083 .
_:939505 up:source unirule:MF_04083 .
_:939506 up:source unirule:MF_04083 .
_:939507 up:source unirule:MF_04083 .
_:939508 up:source unirule:MF_04083 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation13 ,
?annotation17 ,
?annotation18 ,
?annotation19 ,
?annotation20 ,
?annotation21 ,
?annotation22 ,
?annotation23 ,
?annotation24 ,
?annotation25 ,
?annotation26 ,
?annotation27 ;
up:classifiedWith GO:0005198 ,
GO:0016020 ,
GO:0019062 ,
GO:0019064 ,
GO:0019082 ,
GO:0020002 ,
GO:0039654 ,
GO:0044175 ,
GO:0052031 ,
GO:0055036 ,
GO:0075512 ,
GO:1903905 ,
GO:1903908 ,
GO:1903911 ,
keyword:1015 ,
keyword:1032 ,
keyword:1039 ,
keyword:1043 ,
keyword:1133 ,
keyword:1160 ,
keyword:1161 ,
keyword:1162 ,
keyword:1164 ,
keyword:1165 ,
keyword:1168 ,
keyword:1170 ,
keyword:165 ,
keyword:175 ,
keyword:261 ,
keyword:325 ,
keyword:449 ,
keyword:472 ,
keyword:53 ,
keyword:564 ,
keyword:732 ,
keyword:812 ,
keyword:899 ,
keyword:945 ,
keyword:946 ;
up:component ?namedpart2 ,
?namedpart3 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'Envelope glycoprotein gp160' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Env polyprotein' ;
rdf:type up:Structured_Name .
?namedpart2 up:alternativeName _:939415 ;
up:recommendedName _:939414 .
?namedpart3 up:alternativeName _:939418 ;
up:recommendedName _:939417 .
?gene4 skos:prefLabel 'env' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Envelope glycoprotein gp160: Oligomerizes in the host endoplasmic reticulum into predominantly trimers. In a second time, gp160 transits in the host Golgi, where glycosylation is completed. The precursor is then proteolytically cleaved in the trans-Golgi and thereby activated by cellular furin or furin-like proteases to produce gp120 and gp41.' .
?annotation6 a up:Function_Annotation ;
rdfs:comment "Surface protein gp120: Attaches the virus to the host lymphoid cell by binding to the primary receptor CD4. This interaction induces a structural rearrangement creating a high affinity binding site for a chemokine coreceptor like CXCR4 and/or CCR5. Acts as a ligand for CD209/DC-SIGN and CLEC4M/DC-SIGNR, which are respectively found on dendritic cells (DCs), and on endothelial cells of liver sinusoids and lymph node sinuses. These interactions allow capture of viral particles at mucosal surfaces by these cells and subsequent transmission to permissive cells. HIV subverts the migration properties of dendritic cells to gain access to CD4+ T-cells in lymph nodes. Virus transmission to permissive T-cells occurs either in trans (without DCs infection, through viral capture and transmission), or in cis (following DCs productive infection, through the usual CD4-gp120 interaction), thereby inducing a robust infection. In trans infection, bound virions remain infectious over days and it is proposed that they are not degraded, but protected in non-lysosomal acidic organelles within the DCs close to the cell membrane thus contributing to the viral infectious potential during DCs' migration from the periphery to the lymphoid tissues. On arrival at lymphoid tissues, intact virions recycle back to DCs' cell surface allowing virus transmission to CD4+ T-cells." .
?annotation7 a up:Function_Annotation ;
rdfs:comment 'Transmembrane protein gp41: Acts as a class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During fusion of viral and target intracellular membranes, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes. Complete fusion occurs in host cell endosomes and is dynamin-dependent, however some lipid transfer might occur at the plasma membrane. The virus undergoes clathrin-dependent internalization long before endosomal fusion, thus minimizing the surface exposure of conserved viral epitopes during fusion and reducing the efficacy of inhibitors targeting these epitopes. Membranes fusion leads to delivery of the nucleocapsid into the cytoplasm.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'The mature envelope protein (Env) consists of a homotrimer of non-covalently associated gp120-gp41 heterodimers. The resulting complex protrudes from the virus surface as a spike. There seems to be as few as 10 spikes on the average virion. Surface protein gp120 interacts with host CD4, CCR5 and CXCR4. Gp120 also interacts with the C-type lectins CD209/DC-SIGN and CLEC4M/DC-SIGNR (collectively referred to as DC-SIGN(R)). Gp120 and gp41 interact with GalCer. Gp120 interacts with host ITGA4/ITGB7 complex; on CD4+ T-cells, this interaction results in rapid activation of integrin ITGAL/LFA-1, which facilitates efficient cell-to-cell spreading of HIV-1. Gp120 interacts with cell-associated heparan sulfate; this interaction increases virus infectivity on permissive cells and may be involved in infection of CD4- cells.' .
?annotation9 a up:Subcellular_Location_Annotation ;
rdfs:comment 'It is probably concentrated at the site of budding and incorporated into the virions possibly by contacts between the cytoplasmic tail of Env and the N-terminus of Gag' .
?annotation9li10 up:cellularComponent .
?annotation9li11 up:cellularComponent .
?annotation9li12 up:cellularComponent .
?annotation13 a up:Subcellular_Location_Annotation ;
rdfs:comment 'The surface protein is not anchored to the viral envelope, but associates with the extravirion surface through its binding to TM. It is probably concentrated at the site of budding and incorporated into the virions possibly by contacts between the cytoplasmic tail of Env and the N-terminus of Gag' .
?annotation13li14 up:cellularComponent .
?annotation13li15 up:cellularComponent .
?annotation13li16 up:cellularComponent .
?annotation17 a up:Domain_Annotation ;
rdfs:comment 'The YXXL motif is involved in determining the exact site of viral release at the surface of infected mononuclear cells and promotes endocytosis. YXXL and di-leucine endocytosis motifs interact directly or indirectly with the clathrin adapter complexes, opperate independently, and their activities are not additive.' .
?annotation18 a up:Domain_Annotation ;
rdfs:comment 'The 17 amino acids long immunosuppressive region is present in many retroviral envelope proteins. Synthetic peptides derived from this relatively conserved sequence inhibit immune function in vitro and in vivo.' .
?annotation19 a up:Domain_Annotation ;
rdfs:comment 'The CD4-binding region is targeted by the antibody b12.' .
?annotation20 a up:Domain_Annotation ;
rdfs:comment 'The membrane proximal external region (MPER) present in gp41 is a tryptophan-rich region recognized by the antibodies 2F5, Z13, and 4E10. MPER seems to play a role in fusion.' .
?annotation21 a up:Domain_Annotation ;
rdfs:comment 'Some of the most genetically diverse regions of the viral genome are present in Env. They are called variable regions 1 through 5 (V1 through V5). Coreceptor usage of gp120 is determined mainly by the primary structure of the third variable region (V3) in the outer domain of gp120. The sequence of V3 determines which coreceptor, CCR5 and/or CXCR4 (corresponding to R5/macrophage, X4/T cell and R5X4/T cell and macrophage tropism), is used to trigger the fusion potential of the Env complex, and hence which cells the virus can infect. Binding to CCR5 involves a region adjacent in addition to V3.' .
?annotation22 a up:PTM_Annotation ;
rdfs:comment "Highly glycosylated by host. The high number of glycan on the protein is reffered to as 'glycan shield' because it contributes to hide protein sequence from adaptive immune system." .
?annotation23 a up:PTM_Annotation ;
rdfs:comment 'Specific enzymatic cleavages in vivo yield mature proteins. Envelope glycoproteins are synthesized as a inactive precursor that is heavily N-glycosylated and processed likely by host cell furin in the Golgi to yield the mature SU and TM proteins. The cleavage site between SU and TM requires the minimal sequence [KR]-X-[KR]-R. About 2 of the 9 disulfide bonds of gp41 are reduced by P4HB/PDI, following binding to CD4 receptor.' .
?annotation24 a up:PTM_Annotation ;
rdfs:comment 'Palmitoylation of the transmembrane protein and of Env polyprotein (prior to its proteolytic cleavage) is essential for their association with host cell membrane lipid rafts. Palmitoylation is therefore required for envelope trafficking to classical lipid rafts, but not for viral replication.' .
?annotation25 a up:Annotation ;
rdfs:comment 'Inhibitors targeting HIV-1 viral envelope proteins are used as antiretroviral drugs. Attachment of virions to the cell surface via non-specific interactions and CD4 binding can be blocked by inhibitors that include cyanovirin-N, cyclotriazadisulfonamide analogs, PRO 2000, TNX 355 and PRO 542. In addition, BMS 806 can block CD4-induced conformational changes. Env interactions with the coreceptor molecules can be targeted by CCR5 antagonists including SCH-D, maraviroc (UK 427857) and aplaviroc (GW 873140), and the CXCR4 antagonist AMD 070. Fusion of viral and cellular membranes can be inhibited by peptides such as enfuvirtide and tifuvirtide (T 1249). Resistance to inhibitors associated with mutations in Env are observed. Most of the time, single mutations confer only a modest reduction in drug susceptibility. Combination of several mutations is usually required to develop a high-level drug resistance.' .
?annotation26 a up:Annotation ;
rdfs:comment 'HIV-1 lineages are divided in three main groups, M (for Major), O (for Outlier), and N (for New, or Non-M, Non-O). The vast majority of strains found worldwide belong to the group M. Group O seems to be endemic to and largely confined to Cameroon and neighboring countries in West Central Africa, where these viruses represent a small minority of HIV-1 strains. The group N is represented by a limited number of isolates from Cameroonian persons. The group M is further subdivided in 9 clades or subtypes (A to D, F to H, J and K).' .
?annotation27 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the HIV-1 env protein family.' .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Signal_Peptide_Annotation .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Envelope glycoprotein gp160' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Surface protein gp120' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Transmembrane protein gp41' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Extracellular' .
?pfsb54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'V1' .
?pfsb72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'V2' .
?pfsb78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'V3' .
?pfsb84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'CD4-binding loop' .
?pfsb90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'V4' .
?pfsb96 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'V5' .
?pfsb102 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfs106 up:annotation ?annotation107 .
?annotation107 faldo:begin ?pfsb108 ;
faldo:end ?pfse109 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Fusion peptide' .
?pfsb108 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse109 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?pfs112 up:annotation ?annotation113 .
?annotation113 faldo:begin ?pfsb114 ;
faldo:end ?pfse115 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Immunosuppression' .
?pfsb114 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfse115 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfs118 up:annotation ?annotation119 .
?annotation119 faldo:begin ?pfsb120 ;
faldo:end ?pfse121 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'MPER; binding to GalCer' .
?pfsb120 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfse121 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?pfs124 up:annotation ?annotation125 .
?annotation125 faldo:begin ?pfsb126 ;
faldo:end ?pfse127 ;
rdf:type up:Coiled_Coil_Annotation .
?pfsb126 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfse127 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?pfs130 up:annotation ?annotation131 .
?annotation131 faldo:begin ?pfsb132 ;
faldo:end ?pfse133 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by host furin' .
?pfsb132 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfse133 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?pfs136 up:annotation ?annotation137 .
?annotation137 faldo:begin ?pfsb138 ;
faldo:end ?pfse139 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'YXXL motif; contains endocytosis signal' .
?pfsb138 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfse139 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?pfs142 up:annotation ?annotation143 .
?annotation143 faldo:begin ?pfsb144 ;
faldo:end ?pfse145 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Di-leucine internalization motif' .
?pfsb144 faldo:position ?thisPositionOn146 ;
rdf:type faldo:ExactPosition .
?pfse145 faldo:position ?thisPositionOn147 ;
rdf:type faldo:ExactPosition .
?pfs148 up:annotation ?annotation149 .
?annotation149 faldo:begin ?pfsb150 ;
faldo:end ?pfse151 ;
rdf:type up:Lipidation_Annotation ;
rdfs:comment 'S-palmitoyl cysteine; by host' .
?pfsb150 faldo:position ?thisPositionOn152 ;
rdf:type faldo:ExactPosition .
?pfse151 faldo:position ?thisPositionOn153 ;
rdf:type faldo:ExactPosition .
?pfs154 up:annotation ?annotation155 .
?annotation155 faldo:begin ?pfsb156 ;
faldo:end ?pfse157 ;
rdf:type up:Lipidation_Annotation ;
rdfs:comment 'S-palmitoyl cysteine; by host' .
?pfsb156 faldo:position ?thisPositionOn158 ;
rdf:type faldo:ExactPosition .
?pfse157 faldo:position ?thisPositionOn159 ;
rdf:type faldo:ExactPosition .
?pfs160 up:annotation ?annotation161 .
?annotation161 faldo:begin ?pfsb162 ;
faldo:end ?pfse163 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb162 faldo:position ?thisPositionOn164 ;
rdf:type faldo:ExactPosition .
?pfse163 faldo:position ?thisPositionOn165 ;
rdf:type faldo:ExactPosition .
?pfs166 up:annotation ?annotation167 .
?annotation167 faldo:begin ?pfsb168 ;
faldo:end ?pfse169 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb168 faldo:position ?thisPositionOn170 ;
rdf:type faldo:ExactPosition .
?pfse169 faldo:position ?thisPositionOn171 ;
rdf:type faldo:ExactPosition .
?pfs172 up:annotation ?annotation173 .
?annotation173 faldo:begin ?pfsb174 ;
faldo:end ?pfse175 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb174 faldo:position ?thisPositionOn176 ;
rdf:type faldo:ExactPosition .
?pfse175 faldo:position ?thisPositionOn177 ;
rdf:type faldo:ExactPosition .
?pfs178 up:annotation ?annotation179 .
?annotation179 faldo:begin ?pfsb180 ;
faldo:end ?pfse181 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb180 faldo:position ?thisPositionOn182 ;
rdf:type faldo:ExactPosition .
?pfse181 faldo:position ?thisPositionOn183 ;
rdf:type faldo:ExactPosition .
?pfs184 up:annotation ?annotation185 .
?annotation185 faldo:begin ?pfsb186 ;
faldo:end ?pfse187 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb186 faldo:position ?thisPositionOn188 ;
rdf:type faldo:ExactPosition .
?pfse187 faldo:position ?thisPositionOn189 ;
rdf:type faldo:ExactPosition .
?pfs190 up:annotation ?annotation191 .
?annotation191 faldo:begin ?pfsb192 ;
faldo:end ?pfse193 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb192 faldo:position ?thisPositionOn194 ;
rdf:type faldo:ExactPosition .
?pfse193 faldo:position ?thisPositionOn195 ;
rdf:type faldo:ExactPosition .
?pfs196 up:annotation ?annotation197 .
?annotation197 faldo:begin ?pfsb198 ;
faldo:end ?pfse199 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb198 faldo:position ?thisPositionOn200 ;
rdf:type faldo:ExactPosition .
?pfse199 faldo:position ?thisPositionOn201 ;
rdf:type faldo:ExactPosition .
?pfs202 up:annotation ?annotation203 .
?annotation203 faldo:begin ?pfsb204 ;
faldo:end ?pfse205 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb204 faldo:position ?thisPositionOn206 ;
rdf:type faldo:ExactPosition .
?pfse205 faldo:position ?thisPositionOn207 ;
rdf:type faldo:ExactPosition .
?pfs208 up:annotation ?annotation209 .
?annotation209 faldo:begin ?pfsb210 ;
faldo:end ?pfse211 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb210 faldo:position ?thisPositionOn212 ;
rdf:type faldo:ExactPosition .
?pfse211 faldo:position ?thisPositionOn213 ;
rdf:type faldo:ExactPosition .
?pfs214 up:annotation ?annotation215 .
?annotation215 faldo:begin ?pfsb216 ;
faldo:end ?pfse217 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb216 faldo:position ?thisPositionOn218 ;
rdf:type faldo:ExactPosition .
?pfse217 faldo:position ?thisPositionOn219 ;
rdf:type faldo:ExactPosition .
_:939509 a rdf:Statement ;
up:attribution _:939411 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:939510 a rdf:Statement ;
up:attribution _:939412 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:939511 a rdf:Statement ;
up:attribution _:939413 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:939512 a rdf:Statement ;
up:attribution _:939416 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart2 .
_:939513 a rdf:Statement ;
up:attribution _:939419 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart3 .
_:939514 a rdf:Statement ;
up:attribution _:939420 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:939515 a rdf:Statement ;
up:attribution _:939421 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:939516 a rdf:Statement ;
up:attribution _:939422 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:939517 a rdf:Statement ;
up:attribution _:939423 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:939518 a rdf:Statement ;
up:attribution _:939424 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:939519 a rdf:Statement ;
up:attribution _:939425 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:939520 a rdf:Statement ;
up:attribution _:939426 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:939521 a rdf:Statement ;
up:attribution _:939427 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:939522 a rdf:Statement ;
up:attribution _:939428 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:939523 a rdf:Statement ;
up:attribution _:939429 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:939524 a rdf:Statement ;
up:attribution _:939430 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:939525 a rdf:Statement ;
up:attribution _:939431 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:939526 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:939527 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:939528 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:939529 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:939530 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:939531 a rdf:Statement ;
up:attribution _:939437 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:939532 a rdf:Statement ;
up:attribution _:939438 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:53 .
_:939533 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1165 .
_:939534 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:165 .
_:939535 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
_:939536 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:939537 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1170 .
_:939538 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1168 .
_:939539 a rdf:Statement ;
up:attribution _:939445 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:939540 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
_:939541 a rdf:Statement ;
up:attribution _:939447 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1039 .
_:939542 a rdf:Statement ;
up:attribution _:939448 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:939543 a rdf:Statement ;
up:attribution _:939449 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:939544 a rdf:Statement ;
up:attribution _:939450 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:449 .
_:939545 a rdf:Statement ;
up:attribution _:939451 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:939546 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:564 .
_:939547 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:939548 a rdf:Statement ;
up:attribution _:939454 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:939549 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:939550 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1161 .
_:939551 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:261 .
_:939552 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:899 .
_:939553 a rdf:Statement ;
up:attribution _:939459 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1162 .
_:939554 a rdf:Statement ;
up:attribution _:939460 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:939555 a rdf:Statement ;
up:attribution _:939461 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1164 .
_:939556 a rdf:Statement ;
up:attribution _:939462 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:939557 a rdf:Statement ;
up:attribution _:939463 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044175 .
_:939558 a rdf:Statement ;
up:attribution _:939464 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0020002 .
_:939559 a rdf:Statement ;
up:attribution _:939465 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:939560 a rdf:Statement ;
up:attribution _:939466 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:939561 a rdf:Statement ;
up:attribution _:939467 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005198 .
_:939562 a rdf:Statement ;
up:attribution _:939468 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0075512 .
_:939563 a rdf:Statement ;
up:attribution _:939469 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052031 .
_:939564 a rdf:Statement ;
up:attribution _:939470 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039654 .
_:939565 a rdf:Statement ;
up:attribution _:939471 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019064 .
_:939566 a rdf:Statement ;
up:attribution _:939472 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1903905 .
_:939567 a rdf:Statement ;
up:attribution _:939473 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1903908 .
_:939568 a rdf:Statement ;
up:attribution _:939474 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1903911 .
_:939569 a rdf:Statement ;
up:attribution _:939475 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019082 .
_:939570 a rdf:Statement ;
up:attribution _:939476 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019062 .
_:939571 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:939572 a rdf:Statement ;
up:attribution _:939477 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:939573 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:939574 a rdf:Statement ;
up:attribution _:939478 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:939575 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:939576 a rdf:Statement ;
up:attribution _:939479 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:939577 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:939578 a rdf:Statement ;
up:attribution _:939480 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:939579 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:939580 a rdf:Statement ;
up:attribution _:939481 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:939581 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:939582 a rdf:Statement ;
up:attribution _:939482 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:939583 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:939584 a rdf:Statement ;
up:attribution _:939483 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:939585 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:939586 a rdf:Statement ;
up:attribution _:939484 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:939587 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:939588 a rdf:Statement ;
up:attribution _:939485 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:939589 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:939590 a rdf:Statement ;
up:attribution _:939486 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:939591 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:939592 a rdf:Statement ;
up:attribution _:939487 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:939593 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:939594 a rdf:Statement ;
up:attribution _:939488 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:939595 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:939596 a rdf:Statement ;
up:attribution _:939489 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:939597 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs106 ;
rdf:predicate up:annotation ;
rdf:object ?annotation107 .
_:939598 a rdf:Statement ;
up:attribution _:939490 ;
rdf:subject ?pfs106 ;
rdf:predicate up:annotation ;
rdf:object ?annotation107 .
_:939599 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:939600 a rdf:Statement ;
up:attribution _:939491 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:939601 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:939602 a rdf:Statement ;
up:attribution _:939492 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:939603 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs124 ;
rdf:predicate up:annotation ;
rdf:object ?annotation125 .
_:939604 a rdf:Statement ;
up:attribution _:939493 ;
rdf:subject ?pfs124 ;
rdf:predicate up:annotation ;
rdf:object ?annotation125 .
_:939605 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs130 ;
rdf:predicate up:annotation ;
rdf:object ?annotation131 .
_:939606 a rdf:Statement ;
up:attribution _:939494 ;
rdf:subject ?pfs130 ;
rdf:predicate up:annotation ;
rdf:object ?annotation131 .
_:939607 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
_:939608 a rdf:Statement ;
up:attribution _:939495 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
_:939609 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
_:939610 a rdf:Statement ;
up:attribution _:939496 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
_:939611 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs148 ;
rdf:predicate up:annotation ;
rdf:object ?annotation149 .
_:939612 a rdf:Statement ;
up:attribution _:939497 ;
rdf:subject ?pfs148 ;
rdf:predicate up:annotation ;
rdf:object ?annotation149 .
_:939613 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs154 ;
rdf:predicate up:annotation ;
rdf:object ?annotation155 .
_:939614 a rdf:Statement ;
up:attribution _:939498 ;
rdf:subject ?pfs154 ;
rdf:predicate up:annotation ;
rdf:object ?annotation155 .
_:939615 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs160 ;
rdf:predicate up:annotation ;
rdf:object ?annotation161 .
_:939616 a rdf:Statement ;
up:attribution _:939499 ;
rdf:subject ?pfs160 ;
rdf:predicate up:annotation ;
rdf:object ?annotation161 .
_:939617 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs166 ;
rdf:predicate up:annotation ;
rdf:object ?annotation167 .
_:939618 a rdf:Statement ;
up:attribution _:939500 ;
rdf:subject ?pfs166 ;
rdf:predicate up:annotation ;
rdf:object ?annotation167 .
_:939619 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs172 ;
rdf:predicate up:annotation ;
rdf:object ?annotation173 .
_:939620 a rdf:Statement ;
up:attribution _:939501 ;
rdf:subject ?pfs172 ;
rdf:predicate up:annotation ;
rdf:object ?annotation173 .
_:939621 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs178 ;
rdf:predicate up:annotation ;
rdf:object ?annotation179 .
_:939622 a rdf:Statement ;
up:attribution _:939502 ;
rdf:subject ?pfs178 ;
rdf:predicate up:annotation ;
rdf:object ?annotation179 .
_:939623 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs184 ;
rdf:predicate up:annotation ;
rdf:object ?annotation185 .
_:939624 a rdf:Statement ;
up:attribution _:939503 ;
rdf:subject ?pfs184 ;
rdf:predicate up:annotation ;
rdf:object ?annotation185 .
_:939625 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs190 ;
rdf:predicate up:annotation ;
rdf:object ?annotation191 .
_:939626 a rdf:Statement ;
up:attribution _:939504 ;
rdf:subject ?pfs190 ;
rdf:predicate up:annotation ;
rdf:object ?annotation191 .
_:939627 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs196 ;
rdf:predicate up:annotation ;
rdf:object ?annotation197 .
_:939628 a rdf:Statement ;
up:attribution _:939505 ;
rdf:subject ?pfs196 ;
rdf:predicate up:annotation ;
rdf:object ?annotation197 .
_:939629 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs202 ;
rdf:predicate up:annotation ;
rdf:object ?annotation203 .
_:939630 a rdf:Statement ;
up:attribution _:939506 ;
rdf:subject ?pfs202 ;
rdf:predicate up:annotation ;
rdf:object ?annotation203 .
_:939631 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs208 ;
rdf:predicate up:annotation ;
rdf:object ?annotation209 .
_:939632 a rdf:Statement ;
up:attribution _:939507 ;
rdf:subject ?pfs208 ;
rdf:predicate up:annotation ;
rdf:object ?annotation209 .
_:939633 a rdf:Statement ;
up:source unirule:MF_04083 ;
rdf:subject ?pfs214 ;
rdf:predicate up:annotation ;
rdf:object ?annotation215 .
_:939634 a rdf:Statement ;
up:attribution _:939508 ;
rdf:subject ?pfs214 ;
rdf:predicate up:annotation ;
rdf:object ?annotation215 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04083
#Rule MF_04083 Created by:? on:2017-06-08 Modified by:Catherine Rivoire on:2025-01-14
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04083 .
?thisOrganism rdfs:subClassOf+ taxon:11646 .
BIND(URI(CONCAT(STR(?this), '#MF_04083a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a3')) AS ?namedpart3) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a17')) AS ?annotation17) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a18')) AS ?annotation18) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a19')) AS ?annotation19) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a20')) AS ?annotation20) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a21')) AS ?annotation21) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a22')) AS ?annotation22) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a23')) AS ?annotation23) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a24')) AS ?annotation24) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a25')) AS ?annotation25) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a26')) AS ?annotation26) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a27')) AS ?annotation27) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP04578225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083220 .
?templateMotifSequenceMatchRegionP04578225 faldo:begin ?templateMotifSequenceMatchBeginP04578226 .
?templateMotifSequenceMatchBeginP04578226 faldo:position ?templateMotifSequenceMatchBeginPositionP04578221 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578227 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083230 .
?targetMotifMatchRegionMatchBeginMF_04083230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083231 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083220, 1, (STRLEN(?templateMotifCigarP04578MF_04083220) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083220, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionP04578221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083222, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083222) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083222, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083222) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_04083223) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((BOUND(?thisPositionOn32) && BOUND(?thisPositionOn33))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP04578240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083235 .
?templateMotifSequenceMatchRegionP04578240 faldo:begin ?templateMotifSequenceMatchBeginP04578241 .
?templateMotifSequenceMatchBeginP04578241 faldo:position ?templateMotifSequenceMatchBeginPositionP04578236 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578242 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083245 .
?targetMotifMatchRegionMatchBeginMF_04083245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083246 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083235, 1, (STRLEN(?templateMotifCigarP04578MF_04083235) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083235, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP04578236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083237, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083237) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083237, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083237) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_04083238) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((BOUND(?thisPositionOn38) && BOUND(?thisPositionOn39))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP04578255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083250 .
?templateMotifSequenceMatchRegionP04578255 faldo:begin ?templateMotifSequenceMatchBeginP04578256 .
?templateMotifSequenceMatchBeginP04578256 faldo:position ?templateMotifSequenceMatchBeginPositionP04578251 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578257 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083260 .
?targetMotifMatchRegionMatchBeginMF_04083260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083261 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083250, 1, (STRLEN(?templateMotifCigarP04578MF_04083250) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083250, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP04578251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083252, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083252) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083252, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083252) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_04083253) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083250, 1, (STRLEN(?templateMotifCigarP04578MF_04083250) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083250, CONCAT('^(?:-*[^-]){', STR(((511 - ?templateMotifSequenceMatchBeginPositionP04578251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083252, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083252) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083252, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083252) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_04083253) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((BOUND(?thisPositionOn44) && BOUND(?thisPositionOn45))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionP04578272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083267 .
?templateMotifSequenceMatchRegionP04578272 faldo:begin ?templateMotifSequenceMatchBeginP04578273 .
?templateMotifSequenceMatchBeginP04578273 faldo:position ?templateMotifSequenceMatchBeginPositionP04578268 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578274 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083277 .
?targetMotifMatchRegionMatchBeginMF_04083277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083278 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083267, 1, (STRLEN(?templateMotifCigarP04578MF_04083267) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083267, CONCAT('^(?:-*[^-]){', STR(((512 - ?templateMotifSequenceMatchBeginPositionP04578268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083269, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083269) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083269, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083269) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_04083270) - 1) AS ?thisPositionOn50) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((BOUND(?thisPositionOn50) && BOUND(?thisPositionOn51))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionP04578287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083282 .
?templateMotifSequenceMatchRegionP04578287 faldo:begin ?templateMotifSequenceMatchBeginP04578288 .
?templateMotifSequenceMatchBeginP04578288 faldo:position ?templateMotifSequenceMatchBeginPositionP04578283 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578289 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083293 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083284 .
?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083292 .
?targetMotifMatchRegionMatchBeginMF_04083292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083285 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083293 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083282, 1, (STRLEN(?templateMotifCigarP04578MF_04083282) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083282, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP04578283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083284, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083284) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083284, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083284) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_04083285) - 1) AS ?thisPositionOn56) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083282, 1, (STRLEN(?templateMotifCigarP04578MF_04083282) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083282, CONCAT('^(?:-*[^-]){', STR(((684 - ?templateMotifSequenceMatchBeginPositionP04578283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1296) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083284, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083284) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1296), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083284, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083284) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1296), '}'), '')))), '[^-]', ''))) AS ?step2297) .
BIND(((?step2297 + ?targetMotifMatchRegionMatchBeginPositionMF_04083285) - 1) AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t298) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse55) .
FILTER ((BOUND(?thisPositionOn56) && BOUND(?thisPositionOn57))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch303 faldo:location ?templateMotifSequenceMatchRegionP04578304 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578306 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083299 .
?templateMotifSequenceMatchRegionP04578304 faldo:begin ?templateMotifSequenceMatchBeginP04578305 .
?templateMotifSequenceMatchBeginP04578305 faldo:position ?templateMotifSequenceMatchBeginPositionP04578300 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578306 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch307 faldo:location ?targetMotifMatchRegionMatch308 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083310 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083301 .
?targetMotifMatchRegionMatch308 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083309 .
?targetMotifMatchRegionMatchBeginMF_04083309 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083302 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083310 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083299, 1, (STRLEN(?templateMotifCigarP04578MF_04083299) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083299, CONCAT('^(?:-*[^-]){', STR(((685 - ?templateMotifSequenceMatchBeginPositionP04578300) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1311) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083301, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083301) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083301, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083301, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083301) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083301, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), '')))), '[^-]', ''))) AS ?step2312) .
BIND(((?step2312 + ?targetMotifMatchRegionMatchBeginPositionMF_04083302) - 1) AS ?thisPositionOn62) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083299, 1, (STRLEN(?templateMotifCigarP04578MF_04083299) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083299, CONCAT('^(?:-*[^-]){', STR(((705 - ?templateMotifSequenceMatchBeginPositionP04578300) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1313) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083301, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083301) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083301, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083301, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083301) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083301, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), '')))), '[^-]', ''))) AS ?step2314) .
BIND(((?step2314 + ?targetMotifMatchRegionMatchBeginPositionMF_04083302) - 1) AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t315) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse61) .
FILTER ((BOUND(?thisPositionOn62) && BOUND(?thisPositionOn63))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch320 faldo:location ?templateMotifSequenceMatchRegionP04578321 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578323 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083316 .
?templateMotifSequenceMatchRegionP04578321 faldo:begin ?templateMotifSequenceMatchBeginP04578322 .
?templateMotifSequenceMatchBeginP04578322 faldo:position ?templateMotifSequenceMatchBeginPositionP04578317 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578323 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch324 faldo:location ?targetMotifMatchRegionMatch325 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083327 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083318 .
?targetMotifMatchRegionMatch325 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083326 .
?targetMotifMatchRegionMatchBeginMF_04083326 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083319 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083327 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083316, 1, (STRLEN(?templateMotifCigarP04578MF_04083316) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083316, CONCAT('^(?:-*[^-]){', STR(((706 - ?templateMotifSequenceMatchBeginPositionP04578317) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1328) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083318, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083318) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083318, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083318) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), '')))), '[^-]', ''))) AS ?step2329) .
BIND(((?step2329 + ?targetMotifMatchRegionMatchBeginPositionMF_04083319) - 1) AS ?thisPositionOn68) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t330) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse67) .
FILTER ((BOUND(?thisPositionOn68) && BOUND(?thisPositionOn69))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch335 faldo:location ?templateMotifSequenceMatchRegionP04578336 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578338 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083331 .
?templateMotifSequenceMatchRegionP04578336 faldo:begin ?templateMotifSequenceMatchBeginP04578337 .
?templateMotifSequenceMatchBeginP04578337 faldo:position ?templateMotifSequenceMatchBeginPositionP04578332 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578338 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch339 faldo:location ?targetMotifMatchRegionMatch340 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083342 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083333 .
?targetMotifMatchRegionMatch340 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083341 .
?targetMotifMatchRegionMatchBeginMF_04083341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083334 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083342 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083331, 1, (STRLEN(?templateMotifCigarP04578MF_04083331) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083331, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP04578332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1343) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083333, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083333) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083333, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083333) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), '')))), '[^-]', ''))) AS ?step2344) .
BIND(((?step2344 + ?targetMotifMatchRegionMatchBeginPositionMF_04083334) - 1) AS ?thisPositionOn74) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083331, 1, (STRLEN(?templateMotifCigarP04578MF_04083331) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083331, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP04578332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1345) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083333, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083333) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1345), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083333, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083333) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1345), '}'), '')))), '[^-]', ''))) AS ?step2346) .
BIND(((?step2346 + ?targetMotifMatchRegionMatchBeginPositionMF_04083334) - 1) AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t347) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse73) .
FILTER ((BOUND(?thisPositionOn74) && BOUND(?thisPositionOn75))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch352 faldo:location ?templateMotifSequenceMatchRegionP04578353 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578355 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083348 .
?templateMotifSequenceMatchRegionP04578353 faldo:begin ?templateMotifSequenceMatchBeginP04578354 .
?templateMotifSequenceMatchBeginP04578354 faldo:position ?templateMotifSequenceMatchBeginPositionP04578349 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578355 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch356 faldo:location ?targetMotifMatchRegionMatch357 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083359 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083350 .
?targetMotifMatchRegionMatch357 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083358 .
?targetMotifMatchRegionMatchBeginMF_04083358 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083351 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083359 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083348, 1, (STRLEN(?templateMotifCigarP04578MF_04083348) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083348, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP04578349) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1360) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083350, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083350) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083350, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1360), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083350, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083350) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083350, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1360), '}'), '')))), '[^-]', ''))) AS ?step2361) .
BIND(((?step2361 + ?targetMotifMatchRegionMatchBeginPositionMF_04083351) - 1) AS ?thisPositionOn80) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083348, 1, (STRLEN(?templateMotifCigarP04578MF_04083348) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083348, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP04578349) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1362) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083350, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083350) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083350, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083350, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083350) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083350, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), '')))), '[^-]', ''))) AS ?step2363) .
BIND(((?step2363 + ?targetMotifMatchRegionMatchBeginPositionMF_04083351) - 1) AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t364) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) .
FILTER ((BOUND(?thisPositionOn80) && BOUND(?thisPositionOn81))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch369 faldo:location ?templateMotifSequenceMatchRegionP04578370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083365 .
?templateMotifSequenceMatchRegionP04578370 faldo:begin ?templateMotifSequenceMatchBeginP04578371 .
?templateMotifSequenceMatchBeginP04578371 faldo:position ?templateMotifSequenceMatchBeginPositionP04578366 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578372 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch373 faldo:location ?targetMotifMatchRegionMatch374 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083376 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083367 .
?targetMotifMatchRegionMatch374 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083375 .
?targetMotifMatchRegionMatchBeginMF_04083375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083368 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083376 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083365, 1, (STRLEN(?templateMotifCigarP04578MF_04083365) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083365, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionP04578366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1377) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083367, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083367) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083367, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083367) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), '')))), '[^-]', ''))) AS ?step2378) .
BIND(((?step2378 + ?targetMotifMatchRegionMatchBeginPositionMF_04083368) - 1) AS ?thisPositionOn86) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083365, 1, (STRLEN(?templateMotifCigarP04578MF_04083365) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083365, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionP04578366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1379) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083367, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083367) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083367, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083367) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), '')))), '[^-]', ''))) AS ?step2380) .
BIND(((?step2380 + ?targetMotifMatchRegionMatchBeginPositionMF_04083368) - 1) AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t381) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) .
FILTER ((BOUND(?thisPositionOn86) && BOUND(?thisPositionOn87))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch386 faldo:location ?templateMotifSequenceMatchRegionP04578387 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578389 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083382 .
?templateMotifSequenceMatchRegionP04578387 faldo:begin ?templateMotifSequenceMatchBeginP04578388 .
?templateMotifSequenceMatchBeginP04578388 faldo:position ?templateMotifSequenceMatchBeginPositionP04578383 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578389 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch390 faldo:location ?targetMotifMatchRegionMatch391 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083393 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083384 .
?targetMotifMatchRegionMatch391 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083392 .
?targetMotifMatchRegionMatchBeginMF_04083392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083385 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083393 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083382, 1, (STRLEN(?templateMotifCigarP04578MF_04083382) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083382, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionP04578383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1394) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083384, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083384) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083384, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083384) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), '')))), '[^-]', ''))) AS ?step2395) .
BIND(((?step2395 + ?targetMotifMatchRegionMatchBeginPositionMF_04083385) - 1) AS ?thisPositionOn92) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083382, 1, (STRLEN(?templateMotifCigarP04578MF_04083382) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083382, CONCAT('^(?:-*[^-]){', STR(((374 - ?templateMotifSequenceMatchBeginPositionP04578383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1396) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083384, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083384) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083384, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083384) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), '')))), '[^-]', ''))) AS ?step2397) .
BIND(((?step2397 + ?targetMotifMatchRegionMatchBeginPositionMF_04083385) - 1) AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t398) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) .
FILTER ((BOUND(?thisPositionOn92) && BOUND(?thisPositionOn93))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch403 faldo:location ?templateMotifSequenceMatchRegionP04578404 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578406 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083399 .
?templateMotifSequenceMatchRegionP04578404 faldo:begin ?templateMotifSequenceMatchBeginP04578405 .
?templateMotifSequenceMatchBeginP04578405 faldo:position ?templateMotifSequenceMatchBeginPositionP04578400 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578406 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch407 faldo:location ?targetMotifMatchRegionMatch408 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083410 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083401 .
?targetMotifMatchRegionMatch408 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083409 .
?targetMotifMatchRegionMatchBeginMF_04083409 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083402 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083410 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083399, 1, (STRLEN(?templateMotifCigarP04578MF_04083399) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083399, CONCAT('^(?:-*[^-]){', STR(((385 - ?templateMotifSequenceMatchBeginPositionP04578400) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1411) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083401, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083401) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083401, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1411), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083401, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083401) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083401, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1411), '}'), '')))), '[^-]', ''))) AS ?step2412) .
BIND(((?step2412 + ?targetMotifMatchRegionMatchBeginPositionMF_04083402) - 1) AS ?thisPositionOn98) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083399, 1, (STRLEN(?templateMotifCigarP04578MF_04083399) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083399, CONCAT('^(?:-*[^-]){', STR(((418 - ?templateMotifSequenceMatchBeginPositionP04578400) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1413) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083401, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083401) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083401, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1413), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083401, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083401) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083401, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1413), '}'), '')))), '[^-]', ''))) AS ?step2414) .
BIND(((?step2414 + ?targetMotifMatchRegionMatchBeginPositionMF_04083402) - 1) AS ?thisPositionOn99) .
BIND(?this AS ?pfs1t415) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse97) .
FILTER ((BOUND(?thisPositionOn98) && BOUND(?thisPositionOn99))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch420 faldo:location ?templateMotifSequenceMatchRegionP04578421 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578423 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083416 .
?templateMotifSequenceMatchRegionP04578421 faldo:begin ?templateMotifSequenceMatchBeginP04578422 .
?templateMotifSequenceMatchBeginP04578422 faldo:position ?templateMotifSequenceMatchBeginPositionP04578417 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578423 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch424 faldo:location ?targetMotifMatchRegionMatch425 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083427 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083418 .
?targetMotifMatchRegionMatch425 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083426 .
?targetMotifMatchRegionMatchBeginMF_04083426 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083419 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083427 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083416, 1, (STRLEN(?templateMotifCigarP04578MF_04083416) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083416, CONCAT('^(?:-*[^-]){', STR(((461 - ?templateMotifSequenceMatchBeginPositionP04578417) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1428) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083418, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083418) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083418, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1428), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083418, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083418) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083418, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1428), '}'), '')))), '[^-]', ''))) AS ?step2429) .
BIND(((?step2429 + ?targetMotifMatchRegionMatchBeginPositionMF_04083419) - 1) AS ?thisPositionOn104) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083416, 1, (STRLEN(?templateMotifCigarP04578MF_04083416) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083416, CONCAT('^(?:-*[^-]){', STR(((471 - ?templateMotifSequenceMatchBeginPositionP04578417) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1430) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083418, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083418) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083418, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1430), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083418, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083418) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083418, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1430), '}'), '')))), '[^-]', ''))) AS ?step2431) .
BIND(((?step2431 + ?targetMotifMatchRegionMatchBeginPositionMF_04083419) - 1) AS ?thisPositionOn105) .
BIND(?this AS ?pfs1t432) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfse103) .
FILTER ((BOUND(?thisPositionOn104) && BOUND(?thisPositionOn105))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch437 faldo:location ?templateMotifSequenceMatchRegionP04578438 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578440 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083433 .
?templateMotifSequenceMatchRegionP04578438 faldo:begin ?templateMotifSequenceMatchBeginP04578439 .
?templateMotifSequenceMatchBeginP04578439 faldo:position ?templateMotifSequenceMatchBeginPositionP04578434 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578440 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch441 faldo:location ?targetMotifMatchRegionMatch442 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083444 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083435 .
?targetMotifMatchRegionMatch442 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083443 .
?targetMotifMatchRegionMatchBeginMF_04083443 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083436 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083444 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083433, 1, (STRLEN(?templateMotifCigarP04578MF_04083433) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083433, CONCAT('^(?:-*[^-]){', STR(((512 - ?templateMotifSequenceMatchBeginPositionP04578434) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1445) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083435, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083435) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083435, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1445), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083435, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083435) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083435, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1445), '}'), '')))), '[^-]', ''))) AS ?step2446) .
BIND(((?step2446 + ?targetMotifMatchRegionMatchBeginPositionMF_04083436) - 1) AS ?thisPositionOn110) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083433, 1, (STRLEN(?templateMotifCigarP04578MF_04083433) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083433, CONCAT('^(?:-*[^-]){', STR(((532 - ?templateMotifSequenceMatchBeginPositionP04578434) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1447) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083435, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083435) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083435, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1447), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083435, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083435) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083435, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1447), '}'), '')))), '[^-]', ''))) AS ?step2448) .
BIND(((?step2448 + ?targetMotifMatchRegionMatchBeginPositionMF_04083436) - 1) AS ?thisPositionOn111) .
BIND(?this AS ?pfs1t449) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse109) .
FILTER ((BOUND(?thisPositionOn110) && BOUND(?thisPositionOn111))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a107')) AS ?annotation107) .
BIND(?this AS ?pfs106) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch454 faldo:location ?templateMotifSequenceMatchRegionP04578455 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578457 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083450 .
?templateMotifSequenceMatchRegionP04578455 faldo:begin ?templateMotifSequenceMatchBeginP04578456 .
?templateMotifSequenceMatchBeginP04578456 faldo:position ?templateMotifSequenceMatchBeginPositionP04578451 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578457 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch458 faldo:location ?targetMotifMatchRegionMatch459 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083461 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083452 .
?targetMotifMatchRegionMatch459 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083460 .
?targetMotifMatchRegionMatchBeginMF_04083460 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083453 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083461 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083450, 1, (STRLEN(?templateMotifCigarP04578MF_04083450) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083450, CONCAT('^(?:-*[^-]){', STR(((574 - ?templateMotifSequenceMatchBeginPositionP04578451) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1462) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083452, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083452) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1462), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083452, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083452) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1462), '}'), '')))), '[^-]', ''))) AS ?step2463) .
BIND(((?step2463 + ?targetMotifMatchRegionMatchBeginPositionMF_04083453) - 1) AS ?thisPositionOn116) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083450, 1, (STRLEN(?templateMotifCigarP04578MF_04083450) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083450, CONCAT('^(?:-*[^-]){', STR(((592 - ?templateMotifSequenceMatchBeginPositionP04578451) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1464) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083452, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083452) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1464), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083452, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083452) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1464), '}'), '')))), '[^-]', ''))) AS ?step2465) .
BIND(((?step2465 + ?targetMotifMatchRegionMatchBeginPositionMF_04083453) - 1) AS ?thisPositionOn117) .
BIND(?this AS ?pfs1t466) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse115) .
FILTER ((BOUND(?thisPositionOn116) && BOUND(?thisPositionOn117))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a113')) AS ?annotation113) .
BIND(?this AS ?pfs112) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch471 faldo:location ?templateMotifSequenceMatchRegionP04578472 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578474 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083467 .
?templateMotifSequenceMatchRegionP04578472 faldo:begin ?templateMotifSequenceMatchBeginP04578473 .
?templateMotifSequenceMatchBeginP04578473 faldo:position ?templateMotifSequenceMatchBeginPositionP04578468 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578474 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch475 faldo:location ?targetMotifMatchRegionMatch476 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083478 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083469 .
?targetMotifMatchRegionMatch476 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083477 .
?targetMotifMatchRegionMatchBeginMF_04083477 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083470 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083478 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083467, 1, (STRLEN(?templateMotifCigarP04578MF_04083467) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083467, CONCAT('^(?:-*[^-]){', STR(((662 - ?templateMotifSequenceMatchBeginPositionP04578468) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1479) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083469, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083469) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1479), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083469, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083469) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1479), '}'), '')))), '[^-]', ''))) AS ?step2480) .
BIND(((?step2480 + ?targetMotifMatchRegionMatchBeginPositionMF_04083470) - 1) AS ?thisPositionOn122) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083467, 1, (STRLEN(?templateMotifCigarP04578MF_04083467) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083467, CONCAT('^(?:-*[^-]){', STR(((683 - ?templateMotifSequenceMatchBeginPositionP04578468) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1481) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083469, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083469) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1481), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083469, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083469) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1481), '}'), '')))), '[^-]', ''))) AS ?step2482) .
BIND(((?step2482 + ?targetMotifMatchRegionMatchBeginPositionMF_04083470) - 1) AS ?thisPositionOn123) .
BIND(?this AS ?pfs1t483) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse121) .
FILTER ((BOUND(?thisPositionOn122) && BOUND(?thisPositionOn123))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a119')) AS ?annotation119) .
BIND(?this AS ?pfs118) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch488 faldo:location ?templateMotifSequenceMatchRegionP04578489 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578491 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083484 .
?templateMotifSequenceMatchRegionP04578489 faldo:begin ?templateMotifSequenceMatchBeginP04578490 .
?templateMotifSequenceMatchBeginP04578490 faldo:position ?templateMotifSequenceMatchBeginPositionP04578485 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578491 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch492 faldo:location ?targetMotifMatchRegionMatch493 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083495 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083486 .
?targetMotifMatchRegionMatch493 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083494 .
?targetMotifMatchRegionMatchBeginMF_04083494 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083487 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083495 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083484, 1, (STRLEN(?templateMotifCigarP04578MF_04083484) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083484, CONCAT('^(?:-*[^-]){', STR(((633 - ?templateMotifSequenceMatchBeginPositionP04578485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1496) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083486, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083486) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1496), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083486, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083486) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1496), '}'), '')))), '[^-]', ''))) AS ?step2497) .
BIND(((?step2497 + ?targetMotifMatchRegionMatchBeginPositionMF_04083487) - 1) AS ?thisPositionOn128) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083484, 1, (STRLEN(?templateMotifCigarP04578MF_04083484) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083484, CONCAT('^(?:-*[^-]){', STR(((667 - ?templateMotifSequenceMatchBeginPositionP04578485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1498) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083486, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083486) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1498), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083486, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083486) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1498), '}'), '')))), '[^-]', ''))) AS ?step2499) .
BIND(((?step2499 + ?targetMotifMatchRegionMatchBeginPositionMF_04083487) - 1) AS ?thisPositionOn129) .
BIND(?this AS ?pfs1t500) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse127) .
FILTER ((BOUND(?thisPositionOn128) && BOUND(?thisPositionOn129))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a125')) AS ?annotation125) .
BIND(?this AS ?pfs124) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch505 faldo:location ?templateMotifSequenceMatchRegionP04578506 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578508 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083501 .
?templateMotifSequenceMatchRegionP04578506 faldo:begin ?templateMotifSequenceMatchBeginP04578507 .
?templateMotifSequenceMatchBeginP04578507 faldo:position ?templateMotifSequenceMatchBeginPositionP04578502 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578508 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch509 faldo:location ?targetMotifMatchRegionMatch510 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083512 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083503 .
?targetMotifMatchRegionMatch510 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083511 .
?targetMotifMatchRegionMatchBeginMF_04083511 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083504 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083512 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083501, 1, (STRLEN(?templateMotifCigarP04578MF_04083501) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083501, CONCAT('^(?:-*[^-]){', STR(((511 - ?templateMotifSequenceMatchBeginPositionP04578502) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1513) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083503, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083503) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083503, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1513), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083503, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083503) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083503, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1513), '}'), '')))), '[^-]', ''))) AS ?step2514) .
BIND(((?step2514 + ?targetMotifMatchRegionMatchBeginPositionMF_04083504) - 1) AS ?thisPositionOn134) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083501, 1, (STRLEN(?templateMotifCigarP04578MF_04083501) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083501, CONCAT('^(?:-*[^-]){', STR(((512 - ?templateMotifSequenceMatchBeginPositionP04578502) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1515) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083503, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083503) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083503, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1515), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083503, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083503) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083503, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1515), '}'), '')))), '[^-]', ''))) AS ?step2516) .
BIND(((?step2516 + ?targetMotifMatchRegionMatchBeginPositionMF_04083504) - 1) AS ?thisPositionOn135) .
BIND(?this AS ?pfs1t517) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse133) .
FILTER ((BOUND(?thisPositionOn134) && BOUND(?thisPositionOn135))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a131')) AS ?annotation131) .
BIND(?this AS ?pfs130) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch522 faldo:location ?templateMotifSequenceMatchRegionP04578523 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578525 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083518 .
?templateMotifSequenceMatchRegionP04578523 faldo:begin ?templateMotifSequenceMatchBeginP04578524 .
?templateMotifSequenceMatchBeginP04578524 faldo:position ?templateMotifSequenceMatchBeginPositionP04578519 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578525 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch526 faldo:location ?targetMotifMatchRegionMatch527 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083529 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083520 .
?targetMotifMatchRegionMatch527 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083528 .
?targetMotifMatchRegionMatchBeginMF_04083528 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083521 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083529 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083518, 1, (STRLEN(?templateMotifCigarP04578MF_04083518) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083518, CONCAT('^(?:-*[^-]){', STR(((712 - ?templateMotifSequenceMatchBeginPositionP04578519) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1530) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083520, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083520) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1530), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083520, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083520) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1530), '}'), '')))), '[^-]', ''))) AS ?step2531) .
BIND(((?step2531 + ?targetMotifMatchRegionMatchBeginPositionMF_04083521) - 1) AS ?thisPositionOn140) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083518, 1, (STRLEN(?templateMotifCigarP04578MF_04083518) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083518, CONCAT('^(?:-*[^-]){', STR(((715 - ?templateMotifSequenceMatchBeginPositionP04578519) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1532) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083520, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083520) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1532), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083520, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083520) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1532), '}'), '')))), '[^-]', ''))) AS ?step2533) .
BIND(((?step2533 + ?targetMotifMatchRegionMatchBeginPositionMF_04083521) - 1) AS ?thisPositionOn141) .
BIND(?this AS ?pfs1t534) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfsb138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfse139) .
FILTER (REGEX('Y[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)L', SUBSTR(?thisSequenceValue, ?thisPositionOn140, (?thisPositionOn141 - ?thisPositionOn140)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a137')) AS ?annotation137) .
BIND(?this AS ?pfs136) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch539 faldo:location ?templateMotifSequenceMatchRegionP04578540 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578542 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083535 .
?templateMotifSequenceMatchRegionP04578540 faldo:begin ?templateMotifSequenceMatchBeginP04578541 .
?templateMotifSequenceMatchBeginP04578541 faldo:position ?templateMotifSequenceMatchBeginPositionP04578536 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578542 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch543 faldo:location ?targetMotifMatchRegionMatch544 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083546 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083537 .
?targetMotifMatchRegionMatch544 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083545 .
?targetMotifMatchRegionMatchBeginMF_04083545 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083538 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083546 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND((STRLEN(?thisSequenceValue) - 1) AS ?thisPositionOn146) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn147) .
BIND(?this AS ?pfs1t547) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfsb144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn147))) AS ?pfse145) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn146, (?thisPositionOn147 - ?thisPositionOn146)) = 'LL')) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a143')) AS ?annotation143) .
BIND(?this AS ?pfs142) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch552 faldo:location ?templateMotifSequenceMatchRegionP04578553 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578555 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083548 .
?templateMotifSequenceMatchRegionP04578553 faldo:begin ?templateMotifSequenceMatchBeginP04578554 .
?templateMotifSequenceMatchBeginP04578554 faldo:position ?templateMotifSequenceMatchBeginPositionP04578549 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578555 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch556 faldo:location ?targetMotifMatchRegionMatch557 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083559 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083550 .
?targetMotifMatchRegionMatch557 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083558 .
?targetMotifMatchRegionMatchBeginMF_04083558 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083551 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083559 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083548, 1, (STRLEN(?templateMotifCigarP04578MF_04083548) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083548, CONCAT('^(?:-*[^-]){', STR(((764 - ?templateMotifSequenceMatchBeginPositionP04578549) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1560) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083550, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083550) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083550, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1560), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083550, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083550) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083550, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1560), '}'), '')))), '[^-]', ''))) AS ?step2561) .
BIND(((?step2561 + ?targetMotifMatchRegionMatchBeginPositionMF_04083551) - 1) AS ?thisPositionOn152) .
BIND(?thisPositionOn152 AS ?thisPositionOn153) .
BIND(?this AS ?pfs1t562) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfsb150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn153))) AS ?pfse151) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn152, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a149')) AS ?annotation149) .
BIND(?this AS ?pfs148) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch567 faldo:location ?templateMotifSequenceMatchRegionP04578568 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578570 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083563 .
?templateMotifSequenceMatchRegionP04578568 faldo:begin ?templateMotifSequenceMatchBeginP04578569 .
?templateMotifSequenceMatchBeginP04578569 faldo:position ?templateMotifSequenceMatchBeginPositionP04578564 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578570 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch571 faldo:location ?targetMotifMatchRegionMatch572 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083574 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083565 .
?targetMotifMatchRegionMatch572 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083573 .
?targetMotifMatchRegionMatchBeginMF_04083573 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083566 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083574 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083563, 1, (STRLEN(?templateMotifCigarP04578MF_04083563) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083563, CONCAT('^(?:-*[^-]){', STR(((837 - ?templateMotifSequenceMatchBeginPositionP04578564) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1575) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083565, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083565) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083565, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1575), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083565, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083565) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083565, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1575), '}'), '')))), '[^-]', ''))) AS ?step2576) .
BIND(((?step2576 + ?targetMotifMatchRegionMatchBeginPositionMF_04083566) - 1) AS ?thisPositionOn158) .
BIND(?thisPositionOn158 AS ?thisPositionOn159) .
BIND(?this AS ?pfs1t577) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfsb156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn159))) AS ?pfse157) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn158, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a155')) AS ?annotation155) .
BIND(?this AS ?pfs154) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch582 faldo:location ?templateMotifSequenceMatchRegionP04578583 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578585 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083578 .
?templateMotifSequenceMatchRegionP04578583 faldo:begin ?templateMotifSequenceMatchBeginP04578584 .
?templateMotifSequenceMatchBeginP04578584 faldo:position ?templateMotifSequenceMatchBeginPositionP04578579 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578585 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch586 faldo:location ?targetMotifMatchRegionMatch587 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083589 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083580 .
?targetMotifMatchRegionMatch587 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083588 .
?targetMotifMatchRegionMatchBeginMF_04083588 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083581 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083589 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083578, 1, (STRLEN(?templateMotifCigarP04578MF_04083578) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083578, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP04578579) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1590) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083580, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083580) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083580, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1590), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083580, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083580) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083580, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1590), '}'), '')))), '[^-]', ''))) AS ?step2591) .
BIND(((?step2591 + ?targetMotifMatchRegionMatchBeginPositionMF_04083581) - 1) AS ?thisPositionOn164) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083578, 1, (STRLEN(?templateMotifCigarP04578MF_04083578) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083578, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP04578579) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1592) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083580, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083580) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083580, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1592), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083580, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083580) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083580, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1592), '}'), '')))), '[^-]', ''))) AS ?step2593) .
BIND(((?step2593 + ?targetMotifMatchRegionMatchBeginPositionMF_04083581) - 1) AS ?thisPositionOn165) .
BIND(?this AS ?pfs1t594) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn164))) AS ?pfsb162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn165))) AS ?pfse163) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn164, (?thisPositionOn165 - ?thisPositionOn164)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a161')) AS ?annotation161) .
BIND(?this AS ?pfs160) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch599 faldo:location ?templateMotifSequenceMatchRegionP04578600 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578602 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083595 .
?templateMotifSequenceMatchRegionP04578600 faldo:begin ?templateMotifSequenceMatchBeginP04578601 .
?templateMotifSequenceMatchBeginP04578601 faldo:position ?templateMotifSequenceMatchBeginPositionP04578596 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578602 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch603 faldo:location ?targetMotifMatchRegionMatch604 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083606 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083597 .
?targetMotifMatchRegionMatch604 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083605 .
?targetMotifMatchRegionMatchBeginMF_04083605 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083598 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083606 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083595, 1, (STRLEN(?templateMotifCigarP04578MF_04083595) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083595, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP04578596) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1607) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083597, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083597) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1607), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083597, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083597) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1607), '}'), '')))), '[^-]', ''))) AS ?step2608) .
BIND(((?step2608 + ?targetMotifMatchRegionMatchBeginPositionMF_04083598) - 1) AS ?thisPositionOn170) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083595, 1, (STRLEN(?templateMotifCigarP04578MF_04083595) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083595, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP04578596) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1609) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083597, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083597) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1609), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083597, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083597) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1609), '}'), '')))), '[^-]', ''))) AS ?step2610) .
BIND(((?step2610 + ?targetMotifMatchRegionMatchBeginPositionMF_04083598) - 1) AS ?thisPositionOn171) .
BIND(?this AS ?pfs1t611) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn170))) AS ?pfsb168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn171))) AS ?pfse169) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn170, (?thisPositionOn171 - ?thisPositionOn170)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a167')) AS ?annotation167) .
BIND(?this AS ?pfs166) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch616 faldo:location ?templateMotifSequenceMatchRegionP04578617 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578619 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083612 .
?templateMotifSequenceMatchRegionP04578617 faldo:begin ?templateMotifSequenceMatchBeginP04578618 .
?templateMotifSequenceMatchBeginP04578618 faldo:position ?templateMotifSequenceMatchBeginPositionP04578613 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578619 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch620 faldo:location ?targetMotifMatchRegionMatch621 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083623 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083614 .
?targetMotifMatchRegionMatch621 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083622 .
?targetMotifMatchRegionMatchBeginMF_04083622 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083615 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083623 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083612, 1, (STRLEN(?templateMotifCigarP04578MF_04083612) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083612, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP04578613) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1624) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083614, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083614) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1624), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083614, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083614) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1624), '}'), '')))), '[^-]', ''))) AS ?step2625) .
BIND(((?step2625 + ?targetMotifMatchRegionMatchBeginPositionMF_04083615) - 1) AS ?thisPositionOn176) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083612, 1, (STRLEN(?templateMotifCigarP04578MF_04083612) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083612, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP04578613) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1626) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083614, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083614) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1626), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083614, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083614) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1626), '}'), '')))), '[^-]', ''))) AS ?step2627) .
BIND(((?step2627 + ?targetMotifMatchRegionMatchBeginPositionMF_04083615) - 1) AS ?thisPositionOn177) .
BIND(?this AS ?pfs1t628) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn176))) AS ?pfsb174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn177))) AS ?pfse175) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn176, (?thisPositionOn177 - ?thisPositionOn176)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a173')) AS ?annotation173) .
BIND(?this AS ?pfs172) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch633 faldo:location ?templateMotifSequenceMatchRegionP04578634 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578636 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083629 .
?templateMotifSequenceMatchRegionP04578634 faldo:begin ?templateMotifSequenceMatchBeginP04578635 .
?templateMotifSequenceMatchBeginP04578635 faldo:position ?templateMotifSequenceMatchBeginPositionP04578630 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578636 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch637 faldo:location ?targetMotifMatchRegionMatch638 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083640 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083631 .
?targetMotifMatchRegionMatch638 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083639 .
?targetMotifMatchRegionMatchBeginMF_04083639 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083632 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083640 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083629, 1, (STRLEN(?templateMotifCigarP04578MF_04083629) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083629, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP04578630) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1641) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083631, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083631) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083631, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1641), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083631, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083631) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083631, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1641), '}'), '')))), '[^-]', ''))) AS ?step2642) .
BIND(((?step2642 + ?targetMotifMatchRegionMatchBeginPositionMF_04083632) - 1) AS ?thisPositionOn182) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083629, 1, (STRLEN(?templateMotifCigarP04578MF_04083629) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083629, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP04578630) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1643) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083631, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083631) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083631, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1643), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083631, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083631) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083631, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1643), '}'), '')))), '[^-]', ''))) AS ?step2644) .
BIND(((?step2644 + ?targetMotifMatchRegionMatchBeginPositionMF_04083632) - 1) AS ?thisPositionOn183) .
BIND(?this AS ?pfs1t645) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn182))) AS ?pfsb180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn183))) AS ?pfse181) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn182, (?thisPositionOn183 - ?thisPositionOn182)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a179')) AS ?annotation179) .
BIND(?this AS ?pfs178) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch650 faldo:location ?templateMotifSequenceMatchRegionP04578651 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578653 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083646 .
?templateMotifSequenceMatchRegionP04578651 faldo:begin ?templateMotifSequenceMatchBeginP04578652 .
?templateMotifSequenceMatchBeginP04578652 faldo:position ?templateMotifSequenceMatchBeginPositionP04578647 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578653 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch654 faldo:location ?targetMotifMatchRegionMatch655 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083657 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083648 .
?targetMotifMatchRegionMatch655 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083656 .
?targetMotifMatchRegionMatchBeginMF_04083656 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083649 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083657 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083646, 1, (STRLEN(?templateMotifCigarP04578MF_04083646) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083646, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionP04578647) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1658) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083648, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083648) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083648, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1658), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083648, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083648) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083648, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1658), '}'), '')))), '[^-]', ''))) AS ?step2659) .
BIND(((?step2659 + ?targetMotifMatchRegionMatchBeginPositionMF_04083649) - 1) AS ?thisPositionOn188) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083646, 1, (STRLEN(?templateMotifCigarP04578MF_04083646) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083646, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP04578647) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1660) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083648, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083648) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083648, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1660), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083648, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083648) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083648, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1660), '}'), '')))), '[^-]', ''))) AS ?step2661) .
BIND(((?step2661 + ?targetMotifMatchRegionMatchBeginPositionMF_04083649) - 1) AS ?thisPositionOn189) .
BIND(?this AS ?pfs1t662) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn188))) AS ?pfsb186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn189))) AS ?pfse187) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn188, (?thisPositionOn189 - ?thisPositionOn188)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a185')) AS ?annotation185) .
BIND(?this AS ?pfs184) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch667 faldo:location ?templateMotifSequenceMatchRegionP04578668 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578670 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083663 .
?templateMotifSequenceMatchRegionP04578668 faldo:begin ?templateMotifSequenceMatchBeginP04578669 .
?templateMotifSequenceMatchBeginP04578669 faldo:position ?templateMotifSequenceMatchBeginPositionP04578664 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578670 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch671 faldo:location ?targetMotifMatchRegionMatch672 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083674 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083665 .
?targetMotifMatchRegionMatch672 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083673 .
?targetMotifMatchRegionMatchBeginMF_04083673 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083666 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083674 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083663, 1, (STRLEN(?templateMotifCigarP04578MF_04083663) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083663, CONCAT('^(?:-*[^-]){', STR(((228 - ?templateMotifSequenceMatchBeginPositionP04578664) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1675) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083665, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083665) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1675), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083665, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083665) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1675), '}'), '')))), '[^-]', ''))) AS ?step2676) .
BIND(((?step2676 + ?targetMotifMatchRegionMatchBeginPositionMF_04083666) - 1) AS ?thisPositionOn194) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083663, 1, (STRLEN(?templateMotifCigarP04578MF_04083663) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083663, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP04578664) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1677) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083665, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083665) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1677), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083665, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083665) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1677), '}'), '')))), '[^-]', ''))) AS ?step2678) .
BIND(((?step2678 + ?targetMotifMatchRegionMatchBeginPositionMF_04083666) - 1) AS ?thisPositionOn195) .
BIND(?this AS ?pfs1t679) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn194))) AS ?pfsb192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn195))) AS ?pfse193) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn194, (?thisPositionOn195 - ?thisPositionOn194)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a191')) AS ?annotation191) .
BIND(?this AS ?pfs190) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch684 faldo:location ?templateMotifSequenceMatchRegionP04578685 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578687 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083680 .
?templateMotifSequenceMatchRegionP04578685 faldo:begin ?templateMotifSequenceMatchBeginP04578686 .
?templateMotifSequenceMatchBeginP04578686 faldo:position ?templateMotifSequenceMatchBeginPositionP04578681 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578687 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch688 faldo:location ?targetMotifMatchRegionMatch689 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083691 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083682 .
?targetMotifMatchRegionMatch689 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083690 .
?targetMotifMatchRegionMatchBeginMF_04083690 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083683 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083691 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083680, 1, (STRLEN(?templateMotifCigarP04578MF_04083680) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083680, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionP04578681) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1692) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083682, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083682) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1692), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083682, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083682) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1692), '}'), '')))), '[^-]', ''))) AS ?step2693) .
BIND(((?step2693 + ?targetMotifMatchRegionMatchBeginPositionMF_04083683) - 1) AS ?thisPositionOn200) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083680, 1, (STRLEN(?templateMotifCigarP04578MF_04083680) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083680, CONCAT('^(?:-*[^-]){', STR(((331 - ?templateMotifSequenceMatchBeginPositionP04578681) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1694) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083682, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083682) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1694), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083682, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083682) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1694), '}'), '')))), '[^-]', ''))) AS ?step2695) .
BIND(((?step2695 + ?targetMotifMatchRegionMatchBeginPositionMF_04083683) - 1) AS ?thisPositionOn201) .
BIND(?this AS ?pfs1t696) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn200))) AS ?pfsb198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn201))) AS ?pfse199) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn200, (?thisPositionOn201 - ?thisPositionOn200)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a197')) AS ?annotation197) .
BIND(?this AS ?pfs196) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch701 faldo:location ?templateMotifSequenceMatchRegionP04578702 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578704 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083697 .
?templateMotifSequenceMatchRegionP04578702 faldo:begin ?templateMotifSequenceMatchBeginP04578703 .
?templateMotifSequenceMatchBeginP04578703 faldo:position ?templateMotifSequenceMatchBeginPositionP04578698 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578704 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch705 faldo:location ?targetMotifMatchRegionMatch706 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083708 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083699 .
?targetMotifMatchRegionMatch706 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083707 .
?targetMotifMatchRegionMatchBeginMF_04083707 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083700 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083708 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083697, 1, (STRLEN(?templateMotifCigarP04578MF_04083697) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083697, CONCAT('^(?:-*[^-]){', STR(((378 - ?templateMotifSequenceMatchBeginPositionP04578698) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1709) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083699, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083699) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1709), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083699, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083699) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1709), '}'), '')))), '[^-]', ''))) AS ?step2710) .
BIND(((?step2710 + ?targetMotifMatchRegionMatchBeginPositionMF_04083700) - 1) AS ?thisPositionOn206) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083697, 1, (STRLEN(?templateMotifCigarP04578MF_04083697) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083697, CONCAT('^(?:-*[^-]){', STR(((445 - ?templateMotifSequenceMatchBeginPositionP04578698) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1711) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083699, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083699) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1711), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083699, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083699) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1711), '}'), '')))), '[^-]', ''))) AS ?step2712) .
BIND(((?step2712 + ?targetMotifMatchRegionMatchBeginPositionMF_04083700) - 1) AS ?thisPositionOn207) .
BIND(?this AS ?pfs1t713) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn206))) AS ?pfsb204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn207))) AS ?pfse205) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn206, (?thisPositionOn207 - ?thisPositionOn206)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a203')) AS ?annotation203) .
BIND(?this AS ?pfs202) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch718 faldo:location ?templateMotifSequenceMatchRegionP04578719 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578721 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083714 .
?templateMotifSequenceMatchRegionP04578719 faldo:begin ?templateMotifSequenceMatchBeginP04578720 .
?templateMotifSequenceMatchBeginP04578720 faldo:position ?templateMotifSequenceMatchBeginPositionP04578715 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578721 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch722 faldo:location ?targetMotifMatchRegionMatch723 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083725 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083716 .
?targetMotifMatchRegionMatch723 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083724 .
?targetMotifMatchRegionMatchBeginMF_04083724 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083717 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083725 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083714, 1, (STRLEN(?templateMotifCigarP04578MF_04083714) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083714, CONCAT('^(?:-*[^-]){', STR(((385 - ?templateMotifSequenceMatchBeginPositionP04578715) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1726) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083716, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083716) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083716, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1726), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083716, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083716) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083716, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1726), '}'), '')))), '[^-]', ''))) AS ?step2727) .
BIND(((?step2727 + ?targetMotifMatchRegionMatchBeginPositionMF_04083717) - 1) AS ?thisPositionOn212) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083714, 1, (STRLEN(?templateMotifCigarP04578MF_04083714) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083714, CONCAT('^(?:-*[^-]){', STR(((418 - ?templateMotifSequenceMatchBeginPositionP04578715) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1728) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083716, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083716) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083716, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1728), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083716, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083716) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083716, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1728), '}'), '')))), '[^-]', ''))) AS ?step2729) .
BIND(((?step2729 + ?targetMotifMatchRegionMatchBeginPositionMF_04083717) - 1) AS ?thisPositionOn213) .
BIND(?this AS ?pfs1t730) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn212))) AS ?pfsb210) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn213))) AS ?pfse211) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn212, (?thisPositionOn213 - ?thisPositionOn212)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a209')) AS ?annotation209) .
BIND(?this AS ?pfs208) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch735 faldo:location ?templateMotifSequenceMatchRegionP04578736 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04578738 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04578MF_04083731 .
?templateMotifSequenceMatchRegionP04578736 faldo:begin ?templateMotifSequenceMatchBeginP04578737 .
?templateMotifSequenceMatchBeginP04578737 faldo:position ?templateMotifSequenceMatchBeginPositionP04578732 ;
faldo:reference isoform:P04578-1 .
?templateMotifSequenceProfileAlignmentOperationP04578738 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch739 faldo:location ?targetMotifMatchRegionMatch740 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04083742 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04578MF_04083733 .
?targetMotifMatchRegionMatch740 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04083741 .
?targetMotifMatchRegionMatchBeginMF_04083741 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04083734 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04083742 edam:has_input signature:MF_04083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083731, 1, (STRLEN(?templateMotifCigarP04578MF_04083731) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083731, CONCAT('^(?:-*[^-]){', STR(((598 - ?templateMotifSequenceMatchBeginPositionP04578732) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1743) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083733, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083733) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1743), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083733, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083733) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1743), '}'), '')))), '[^-]', ''))) AS ?step2744) .
BIND(((?step2744 + ?targetMotifMatchRegionMatchBeginPositionMF_04083734) - 1) AS ?thisPositionOn218) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04578MF_04083731, 1, (STRLEN(?templateMotifCigarP04578MF_04083731) - STRLEN(REPLACE(?templateMotifCigarP04578MF_04083731, CONCAT('^(?:-*[^-]){', STR(((604 - ?templateMotifSequenceMatchBeginPositionP04578732) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1745) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04578MF_04083733, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083733) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1745), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04578MF_04083733, 1, (STRLEN(?targetMotifMatchCigarP04578MF_04083733) - STRLEN(REPLACE(?targetMotifMatchCigarP04578MF_04083733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1745), '}'), '')))), '[^-]', ''))) AS ?step2746) .
BIND(((?step2746 + ?targetMotifMatchRegionMatchBeginPositionMF_04083734) - 1) AS ?thisPositionOn219) .
BIND(?this AS ?pfs1t747) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn218))) AS ?pfsb216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn219))) AS ?pfse217) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn218, (?thisPositionOn219 - ?thisPositionOn218)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04083a215')) AS ?annotation215) .
BIND(?this AS ?pfs214) .
}
}
"xsd:string |
