| http://purl.uniprot.org/unirules/MF_01531#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:555050 up:source unirule:MF_01531 .
_:555051 up:source unirule:MF_01531 .
_:555052 up:source unirule:MF_01531 .
_:555053 up:source unirule:MF_01531 .
_:555054 up:source unirule:MF_01531 .
_:555055 up:source unirule:MF_01531 .
_:555056 up:source unirule:MF_01531 .
_:555057 up:source unirule:MF_01531 .
_:555058 up:source unirule:MF_01531 .
_:555059 up:source unirule:MF_01531 .
_:555060 up:source unirule:MF_01531 .
_:555061 up:source unirule:MF_01531 .
_:555062 up:source unirule:MF_01531 .
_:555063 up:source unirule:MF_01531 .
_:555064 up:source unirule:MF_01531 .
_:555065 up:source unirule:MF_01531 .
_:555066 up:source unirule:MF_01531 .
_:555067 up:source unirule:MF_01531 .
_:555068 up:source unirule:MF_01531 .
_:555069 up:source unirule:MF_01531 .
_:555070 up:source unirule:MF_01531 .
_:555071 up:source unirule:MF_01531 .
_:555072 up:source unirule:MF_01531 .
_:555073 up:source unirule:MF_01531 .
_:555074 up:source unirule:MF_01531 .
_:555075 up:source unirule:MF_01531 .
_:555076 up:source unirule:MF_01531 .
_:555077 up:source unirule:MF_01531 .
_:555078 up:source unirule:MF_01531 .
_:555079 up:source unirule:MF_01531 .
_:555080 up:source unirule:MF_01531 .
_:555081 up:source unirule:MF_01531 .
_:555082 up:source unirule:MF_01531 .
_:555083 up:source unirule:MF_01531 .
_:555084 up:source unirule:MF_01531 .
_:555085 up:source unirule:MF_01531 .
_:555086 up:source unirule:MF_01531 .
_:555087 up:source unirule:MF_01531 .
_:555088 up:source unirule:MF_01531 .
_:555089 up:source unirule:MF_01531 .
_:555090 up:source unirule:MF_01531 .
_:555091 up:source unirule:MF_01531 .
_:555092 up:source unirule:MF_01531 .
_:555093 up:source unirule:MF_01531 .
_:555094 up:source unirule:MF_01531 .
_:555095 up:source unirule:MF_01531 .
_:555096 up:source unirule:MF_01531 .
_:555097 up:source unirule:MF_01531 .
_:555098 up:source unirule:MF_01531 .
_:555099 up:source unirule:MF_01531 .
_:555100 up:source unirule:MF_01531 .
_:555101 up:source unirule:MF_01531 .
_:555102 up:source unirule:MF_01531 .
_:555103 up:source unirule:MF_01531 .
_:555104 up:source unirule:MF_01531 .
_:555105 up:source unirule:MF_01531 .
_:555106 up:source unirule:MF_01531 .
_:555107 up:source unirule:MF_01531 .
_:555108 up:source unirule:MF_01531 .
_:555109 up:source unirule:MF_01531 .
_:555110 up:source unirule:MF_01531 .
_:555111 up:source unirule:MF_01531 .
_:555112 up:source unirule:MF_01531 .
_:555113 up:source unirule:MF_01531 .
_:555114 up:source unirule:MF_01531 .
_:555115 up:source unirule:MF_01531 .
_:555116 up:source unirule:MF_01531 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0009279 ,
GO:0015889 ,
GO:0090482 ,
keyword:1134 ,
keyword:406 ,
keyword:472 ,
keyword:626 ,
keyword:732 ,
keyword:798 ,
keyword:812 ,
keyword:813 ,
keyword:998 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'Vitamin B12 transporter BtuB' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Cobalamin receptor' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Outer membrane cobalamin translocator' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'btuB' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily.' .
?case8 up:classifiedWith keyword:106 ,
keyword:479 .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb119 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfs123 up:annotation ?annotation124 .
?annotation124 faldo:begin ?pfsb125 ;
faldo:end ?pfse126 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb125 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse126 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb131 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb137 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfs141 up:annotation ?annotation142 .
?annotation142 faldo:begin ?pfsb143 ;
faldo:end ?pfse144 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'TonB box' .
?pfsb143 faldo:position ?thisPositionOn145 ;
rdf:type faldo:ExactPosition .
?pfse144 faldo:position ?thisPositionOn146 ;
rdf:type faldo:ExactPosition .
?pfs147 up:annotation ?annotation148 .
?annotation148 faldo:begin ?pfsb149 ;
faldo:end ?pfse150 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'TonB C-terminal box' .
?pfsb149 faldo:position ?thisPositionOn151 ;
rdf:type faldo:ExactPosition .
?pfse150 faldo:position ?thisPositionOn152 ;
rdf:type faldo:ExactPosition .
?pfs153 up:annotation ?annotation154 .
?annotation154 faldo:begin ?pfsb155 ;
faldo:end ?pfse156 ;
up:ligand ?ligand157 ;
rdf:type up:Binding_Site_Annotation .
?pfsb155 faldo:position ?thisPositionOn158 ;
rdf:type faldo:ExactPosition .
?pfse156 faldo:position ?thisPositionOn159 ;
rdf:type faldo:ExactPosition .
?ligand157 rdfs:subClassOf chebi:17439 .
?pfs160 up:annotation ?annotation161 .
?annotation161 faldo:begin ?pfsb162 ;
faldo:end ?pfse163 ;
up:ligand ?ligand164 ;
rdf:type up:Binding_Site_Annotation .
?pfsb162 faldo:position ?thisPositionOn165 ;
rdf:type faldo:ExactPosition .
?pfse163 faldo:position ?thisPositionOn166 ;
rdf:type faldo:ExactPosition .
?ligand164 rdfs:subClassOf chebi:17439 .
?pfs167 up:annotation ?annotation168 .
?annotation168 faldo:begin ?pfsb169 ;
faldo:end ?pfse170 ;
up:ligand ?ligand171 ;
rdf:type up:Binding_Site_Annotation .
?pfsb169 faldo:position ?thisPositionOn172 ;
rdf:type faldo:ExactPosition .
?pfse170 faldo:position ?thisPositionOn173 ;
rdf:type faldo:ExactPosition .
?ligand171 rdfs:subClassOf chebi:17439 .
?pfs174 up:annotation ?annotation175 .
?annotation175 faldo:begin ?pfsb176 ;
faldo:end ?pfse177 ;
up:ligand ?ligand178 ;
rdf:type up:Binding_Site_Annotation .
?pfsb176 faldo:position ?thisPositionOn179 ;
rdf:type faldo:ExactPosition .
?pfse177 faldo:position ?thisPositionOn180 ;
rdf:type faldo:ExactPosition .
?ligand178 rdfs:subClassOf chebi:17439 .
?pfs181 up:annotation ?annotation182 .
?annotation182 faldo:begin ?pfsb183 ;
faldo:end ?pfse184 ;
up:ligand ?ligand185 ;
rdf:type up:Binding_Site_Annotation .
?pfsb183 faldo:position ?thisPositionOn186 ;
rdf:type faldo:ExactPosition .
?pfse184 faldo:position ?thisPositionOn187 ;
rdf:type faldo:ExactPosition .
?ligand185 rdfs:subClassOf chebi:17439 .
?pfs188 up:annotation ?annotation189 .
?annotation189 faldo:begin ?pfsb190 ;
faldo:end ?pfse191 ;
up:ligand ?ligand192 ;
rdf:type up:Binding_Site_Annotation .
?pfsb190 faldo:position ?thisPositionOn193 ;
rdf:type faldo:ExactPosition .
?pfse191 faldo:position ?thisPositionOn194 ;
rdf:type faldo:ExactPosition .
?ligand192 rdfs:subClassOf chebi:17439 .
?pfs195 up:annotation ?annotation196 .
?annotation196 faldo:begin ?pfsb197 ;
faldo:end ?pfse198 ;
up:ligand ?ligand199 ;
rdf:type up:Binding_Site_Annotation .
?pfsb197 faldo:position ?thisPositionOn200 ;
rdf:type faldo:ExactPosition .
?pfse198 faldo:position ?thisPositionOn201 ;
rdf:type faldo:ExactPosition .
?ligand199 rdfs:subClassOf chebi:17439 .
?pfs202 up:annotation ?annotation203 .
?annotation203 faldo:begin ?pfsb204 ;
faldo:end ?pfse205 ;
up:ligand ?ligand206 ;
rdf:type up:Binding_Site_Annotation .
?pfsb204 faldo:position ?thisPositionOn207 ;
rdf:type faldo:ExactPosition .
?pfse205 faldo:position ?thisPositionOn208 ;
rdf:type faldo:ExactPosition .
?ligand206 rdfs:subClassOf chebi:17439 .
?pfs209 up:annotation ?annotation210 .
?annotation210 faldo:begin ?pfsb211 ;
faldo:end ?pfse212 ;
up:ligand ?ligand213 ;
rdf:type up:Binding_Site_Annotation .
?pfsb211 faldo:position ?thisPositionOn214 ;
rdf:type faldo:ExactPosition .
?pfse212 faldo:position ?thisPositionOn215 ;
rdf:type faldo:ExactPosition .
?ligand213 rdfs:subClassOf chebi:29108 .
?pfs216 up:annotation ?annotation217 .
?annotation217 faldo:begin ?pfsb218 ;
faldo:end ?pfse219 ;
up:ligand ?ligand220 ;
rdf:type up:Binding_Site_Annotation .
?pfsb218 faldo:position ?thisPositionOn221 ;
rdf:type faldo:ExactPosition .
?pfse219 faldo:position ?thisPositionOn222 ;
rdf:type faldo:ExactPosition .
?ligand220 rdfs:subClassOf chebi:29108 .
?pfs223 up:annotation ?annotation224 .
?annotation224 faldo:begin ?pfsb225 ;
faldo:end ?pfse226 ;
up:ligand ?ligand227 ;
rdf:type up:Binding_Site_Annotation .
?pfsb225 faldo:position ?thisPositionOn228 ;
rdf:type faldo:ExactPosition .
?pfse226 faldo:position ?thisPositionOn229 ;
rdf:type faldo:ExactPosition .
?ligand227 rdfs:subClassOf chebi:29108 .
?pfs230 up:annotation ?annotation231 .
?annotation231 faldo:begin ?pfsb232 ;
faldo:end ?pfse233 ;
up:ligand ?ligand234 ;
rdf:type up:Binding_Site_Annotation .
?pfsb232 faldo:position ?thisPositionOn235 ;
rdf:type faldo:ExactPosition .
?pfse233 faldo:position ?thisPositionOn236 ;
rdf:type faldo:ExactPosition .
?ligand234 rdfs:subClassOf chebi:29108 .
?pfs237 up:annotation ?annotation238 .
?annotation238 faldo:begin ?pfsb239 ;
faldo:end ?pfse240 ;
up:ligand ?ligand241 ;
rdf:type up:Binding_Site_Annotation .
?pfsb239 faldo:position ?thisPositionOn242 ;
rdf:type faldo:ExactPosition .
?pfse240 faldo:position ?thisPositionOn243 ;
rdf:type faldo:ExactPosition .
?ligand241 rdfs:subClassOf chebi:29108 .
?pfs244 up:annotation ?annotation245 .
?annotation245 faldo:begin ?pfsb246 ;
faldo:end ?pfse247 ;
up:ligand ?ligand248 ;
rdf:type up:Binding_Site_Annotation .
?pfsb246 faldo:position ?thisPositionOn249 ;
rdf:type faldo:ExactPosition .
?pfse247 faldo:position ?thisPositionOn250 ;
rdf:type faldo:ExactPosition .
?ligand248 rdfs:subClassOf chebi:29108 .
?pfs251 up:annotation ?annotation252 .
?annotation252 faldo:begin ?pfsb253 ;
faldo:end ?pfse254 ;
up:ligand ?ligand255 ;
rdf:type up:Binding_Site_Annotation .
?pfsb253 faldo:position ?thisPositionOn256 ;
rdf:type faldo:ExactPosition .
?pfse254 faldo:position ?thisPositionOn257 ;
rdf:type faldo:ExactPosition .
?ligand255 rdfs:subClassOf chebi:29108 .
?pfs258 up:annotation ?annotation259 .
?annotation259 faldo:begin ?pfsb260 ;
faldo:end ?pfse261 ;
up:ligand ?ligand262 ;
rdf:type up:Binding_Site_Annotation .
?pfsb260 faldo:position ?thisPositionOn263 ;
rdf:type faldo:ExactPosition .
?pfse261 faldo:position ?thisPositionOn264 ;
rdf:type faldo:ExactPosition .
?ligand262 rdfs:subClassOf chebi:29108 .
?pfs265 up:annotation ?annotation266 .
?annotation266 faldo:begin ?pfsb267 ;
faldo:end ?pfse268 ;
up:ligand ?ligand269 ;
rdf:type up:Binding_Site_Annotation .
?pfsb267 faldo:position ?thisPositionOn270 ;
rdf:type faldo:ExactPosition .
?pfse268 faldo:position ?thisPositionOn271 ;
rdf:type faldo:ExactPosition .
?ligand269 rdfs:subClassOf chebi:29108 .
?pfs272 up:annotation ?annotation273 .
?annotation273 faldo:begin ?pfsb274 ;
faldo:end ?pfse275 ;
up:ligand ?ligand276 ;
rdf:type up:Binding_Site_Annotation .
?pfsb274 faldo:position ?thisPositionOn277 ;
rdf:type faldo:ExactPosition .
?pfse275 faldo:position ?thisPositionOn278 ;
rdf:type faldo:ExactPosition .
?ligand276 rdfs:subClassOf chebi:29108 .
?pfs279 up:annotation ?annotation280 .
?annotation280 faldo:begin ?pfsb281 ;
faldo:end ?pfse282 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'TonB box' .
?pfsb281 faldo:position ?thisPositionOn283 ;
rdf:type faldo:ExactPosition .
?pfse282 faldo:position ?thisPositionOn284 ;
rdf:type faldo:ExactPosition .
?pfs285 up:annotation ?annotation286 .
?annotation286 faldo:begin ?pfsb287 ;
faldo:end ?pfse288 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'TonB C-terminal box' .
?pfsb287 faldo:position ?thisPositionOn289 ;
rdf:type faldo:ExactPosition .
?pfse288 faldo:position ?thisPositionOn290 ;
rdf:type faldo:ExactPosition .
?sam291 up:classifiedWith keyword:732 .
?signal292 faldo:begin ?signalb293 ;
faldo:end ?signale294 .
?signalb293 faldo:position ?signalbp295 .
?signale294 faldo:position ?signalep296 .
?keyword297 up:range ?signal292 .
_:555117 a rdf:Statement ;
up:attribution _:555050 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:555118 a rdf:Statement ;
up:attribution _:555051 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:555119 a rdf:Statement ;
up:attribution _:555052 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:555120 a rdf:Statement ;
up:attribution _:555053 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:555121 a rdf:Statement ;
up:attribution _:555054 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:555122 a rdf:Statement ;
up:attribution _:555055 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:555123 a rdf:Statement ;
up:attribution _:555056 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:555124 a rdf:Statement ;
up:attribution _:555057 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:555125 a rdf:Statement ;
up:attribution _:555058 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:406 .
_:555126 a rdf:Statement ;
up:attribution _:555059 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:555127 a rdf:Statement ;
up:attribution _:555060 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:998 .
_:555128 a rdf:Statement ;
up:attribution _:555061 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:626 .
_:555129 a rdf:Statement ;
up:attribution _:555062 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:555130 a rdf:Statement ;
up:attribution _:555063 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:798 .
_:555131 a rdf:Statement ;
up:attribution _:555064 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:555132 a rdf:Statement ;
up:attribution _:555065 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1134 .
_:555133 a rdf:Statement ;
up:attribution _:555066 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:555134 a rdf:Statement ;
up:attribution _:555067 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0090482 .
_:555135 a rdf:Statement ;
up:attribution _:555068 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015889 .
_:555136 a rdf:Statement ;
up:attribution _:555069 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009279 .
_:555137 a rdf:Statement ;
up:attribution _:555070 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:106 .
_:555138 a rdf:Statement ;
up:attribution _:555071 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:555139 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:555140 a rdf:Statement ;
up:attribution _:555072 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:555141 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:555142 a rdf:Statement ;
up:attribution _:555073 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:555143 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:555144 a rdf:Statement ;
up:attribution _:555074 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:555145 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:555146 a rdf:Statement ;
up:attribution _:555075 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:555147 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:555148 a rdf:Statement ;
up:attribution _:555076 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:555149 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:555150 a rdf:Statement ;
up:attribution _:555077 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:555151 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:555152 a rdf:Statement ;
up:attribution _:555078 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:555153 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:555154 a rdf:Statement ;
up:attribution _:555079 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:555155 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:555156 a rdf:Statement ;
up:attribution _:555080 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:555157 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:555158 a rdf:Statement ;
up:attribution _:555081 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:555159 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:555160 a rdf:Statement ;
up:attribution _:555082 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:555161 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:555162 a rdf:Statement ;
up:attribution _:555083 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:555163 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:555164 a rdf:Statement ;
up:attribution _:555084 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:555165 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:555166 a rdf:Statement ;
up:attribution _:555085 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:555167 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:555168 a rdf:Statement ;
up:attribution _:555086 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:555169 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:555170 a rdf:Statement ;
up:attribution _:555087 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:555171 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:555172 a rdf:Statement ;
up:attribution _:555088 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:555173 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:555174 a rdf:Statement ;
up:attribution _:555089 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:555175 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:555176 a rdf:Statement ;
up:attribution _:555090 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:555177 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:555178 a rdf:Statement ;
up:attribution _:555091 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:555179 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:555180 a rdf:Statement ;
up:attribution _:555092 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:555181 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:555182 a rdf:Statement ;
up:attribution _:555093 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:555183 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs141 ;
rdf:predicate up:annotation ;
rdf:object ?annotation142 .
_:555184 a rdf:Statement ;
up:attribution _:555094 ;
rdf:subject ?pfs141 ;
rdf:predicate up:annotation ;
rdf:object ?annotation142 .
_:555185 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs147 ;
rdf:predicate up:annotation ;
rdf:object ?annotation148 .
_:555186 a rdf:Statement ;
up:attribution _:555095 ;
rdf:subject ?pfs147 ;
rdf:predicate up:annotation ;
rdf:object ?annotation148 .
_:555187 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs153 ;
rdf:predicate up:annotation ;
rdf:object ?annotation154 .
_:555188 a rdf:Statement ;
up:attribution _:555096 ;
rdf:subject ?pfs153 ;
rdf:predicate up:annotation ;
rdf:object ?annotation154 .
_:555189 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs160 ;
rdf:predicate up:annotation ;
rdf:object ?annotation161 .
_:555190 a rdf:Statement ;
up:attribution _:555097 ;
rdf:subject ?pfs160 ;
rdf:predicate up:annotation ;
rdf:object ?annotation161 .
_:555191 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs167 ;
rdf:predicate up:annotation ;
rdf:object ?annotation168 .
_:555192 a rdf:Statement ;
up:attribution _:555098 ;
rdf:subject ?pfs167 ;
rdf:predicate up:annotation ;
rdf:object ?annotation168 .
_:555193 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs174 ;
rdf:predicate up:annotation ;
rdf:object ?annotation175 .
_:555194 a rdf:Statement ;
up:attribution _:555099 ;
rdf:subject ?pfs174 ;
rdf:predicate up:annotation ;
rdf:object ?annotation175 .
_:555195 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs181 ;
rdf:predicate up:annotation ;
rdf:object ?annotation182 .
_:555196 a rdf:Statement ;
up:attribution _:555100 ;
rdf:subject ?pfs181 ;
rdf:predicate up:annotation ;
rdf:object ?annotation182 .
_:555197 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs188 ;
rdf:predicate up:annotation ;
rdf:object ?annotation189 .
_:555198 a rdf:Statement ;
up:attribution _:555101 ;
rdf:subject ?pfs188 ;
rdf:predicate up:annotation ;
rdf:object ?annotation189 .
_:555199 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs195 ;
rdf:predicate up:annotation ;
rdf:object ?annotation196 .
_:555200 a rdf:Statement ;
up:attribution _:555102 ;
rdf:subject ?pfs195 ;
rdf:predicate up:annotation ;
rdf:object ?annotation196 .
_:555201 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs202 ;
rdf:predicate up:annotation ;
rdf:object ?annotation203 .
_:555202 a rdf:Statement ;
up:attribution _:555103 ;
rdf:subject ?pfs202 ;
rdf:predicate up:annotation ;
rdf:object ?annotation203 .
_:555203 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs209 ;
rdf:predicate up:annotation ;
rdf:object ?annotation210 .
_:555204 a rdf:Statement ;
up:attribution _:555104 ;
rdf:subject ?pfs209 ;
rdf:predicate up:annotation ;
rdf:object ?annotation210 .
_:555205 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs216 ;
rdf:predicate up:annotation ;
rdf:object ?annotation217 .
_:555206 a rdf:Statement ;
up:attribution _:555105 ;
rdf:subject ?pfs216 ;
rdf:predicate up:annotation ;
rdf:object ?annotation217 .
_:555207 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs223 ;
rdf:predicate up:annotation ;
rdf:object ?annotation224 .
_:555208 a rdf:Statement ;
up:attribution _:555106 ;
rdf:subject ?pfs223 ;
rdf:predicate up:annotation ;
rdf:object ?annotation224 .
_:555209 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs230 ;
rdf:predicate up:annotation ;
rdf:object ?annotation231 .
_:555210 a rdf:Statement ;
up:attribution _:555107 ;
rdf:subject ?pfs230 ;
rdf:predicate up:annotation ;
rdf:object ?annotation231 .
_:555211 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs237 ;
rdf:predicate up:annotation ;
rdf:object ?annotation238 .
_:555212 a rdf:Statement ;
up:attribution _:555108 ;
rdf:subject ?pfs237 ;
rdf:predicate up:annotation ;
rdf:object ?annotation238 .
_:555213 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs244 ;
rdf:predicate up:annotation ;
rdf:object ?annotation245 .
_:555214 a rdf:Statement ;
up:attribution _:555109 ;
rdf:subject ?pfs244 ;
rdf:predicate up:annotation ;
rdf:object ?annotation245 .
_:555215 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs251 ;
rdf:predicate up:annotation ;
rdf:object ?annotation252 .
_:555216 a rdf:Statement ;
up:attribution _:555110 ;
rdf:subject ?pfs251 ;
rdf:predicate up:annotation ;
rdf:object ?annotation252 .
_:555217 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs258 ;
rdf:predicate up:annotation ;
rdf:object ?annotation259 .
_:555218 a rdf:Statement ;
up:attribution _:555111 ;
rdf:subject ?pfs258 ;
rdf:predicate up:annotation ;
rdf:object ?annotation259 .
_:555219 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs265 ;
rdf:predicate up:annotation ;
rdf:object ?annotation266 .
_:555220 a rdf:Statement ;
up:attribution _:555112 ;
rdf:subject ?pfs265 ;
rdf:predicate up:annotation ;
rdf:object ?annotation266 .
_:555221 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs272 ;
rdf:predicate up:annotation ;
rdf:object ?annotation273 .
_:555222 a rdf:Statement ;
up:attribution _:555113 ;
rdf:subject ?pfs272 ;
rdf:predicate up:annotation ;
rdf:object ?annotation273 .
_:555223 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs279 ;
rdf:predicate up:annotation ;
rdf:object ?annotation280 .
_:555224 a rdf:Statement ;
up:attribution _:555114 ;
rdf:subject ?pfs279 ;
rdf:predicate up:annotation ;
rdf:object ?annotation280 .
_:555225 a rdf:Statement ;
up:source unirule:MF_01531 ;
rdf:subject ?pfs285 ;
rdf:predicate up:annotation ;
rdf:object ?annotation286 .
_:555226 a rdf:Statement ;
up:attribution _:555115 ;
rdf:subject ?pfs285 ;
rdf:predicate up:annotation ;
rdf:object ?annotation286 .
_:555227 a rdf:Statement ;
up:attribution _:555116 ;
rdf:subject ?sam291 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01531
#Rule MF_01531 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01531 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01531a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionP06129303 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129305 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531298 .
?templateMotifSequenceMatchRegionP06129303 faldo:begin ?templateMotifSequenceMatchBeginP06129304 .
?templateMotifSequenceMatchBeginP06129304 faldo:position ?templateMotifSequenceMatchBeginPositionP06129299 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129305 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531309 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531300 .
?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531308 .
?targetMotifMatchRegionMatchBeginMF_01531308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531301 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531309 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531298, 1, (STRLEN(?templateMotifCigarP06129MF_01531298) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531298, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP06129299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531300, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531300) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531300, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531300) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) .
BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_01531301) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531298, 1, (STRLEN(?templateMotifCigarP06129MF_01531298) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531298, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionP06129299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531300, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531300) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531300, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531300) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) .
BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_01531301) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t314) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP06129320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531315 .
?templateMotifSequenceMatchRegionP06129320 faldo:begin ?templateMotifSequenceMatchBeginP06129321 .
?templateMotifSequenceMatchBeginP06129321 faldo:position ?templateMotifSequenceMatchBeginPositionP06129316 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129322 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531317 .
?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531325 .
?targetMotifMatchRegionMatchBeginMF_01531325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531326 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531315, 1, (STRLEN(?templateMotifCigarP06129MF_01531315) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531315, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP06129316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531317, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531317) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531317, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531317) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_01531318) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531315, 1, (STRLEN(?templateMotifCigarP06129MF_01531315) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531315, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP06129316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1329) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531317, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531317) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531317, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531317) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), '')))), '[^-]', ''))) AS ?step2330) .
BIND(((?step2330 + ?targetMotifMatchRegionMatchBeginPositionMF_01531318) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t331) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch336 faldo:location ?templateMotifSequenceMatchRegionP06129337 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129339 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531332 .
?templateMotifSequenceMatchRegionP06129337 faldo:begin ?templateMotifSequenceMatchBeginP06129338 .
?templateMotifSequenceMatchBeginP06129338 faldo:position ?templateMotifSequenceMatchBeginPositionP06129333 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129339 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch340 faldo:location ?targetMotifMatchRegionMatch341 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531343 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531334 .
?targetMotifMatchRegionMatch341 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531342 .
?targetMotifMatchRegionMatchBeginMF_01531342 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531335 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531343 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531332, 1, (STRLEN(?templateMotifCigarP06129MF_01531332) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531332, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionP06129333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531334, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531334) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531334, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531334) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) .
BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_01531335) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531332, 1, (STRLEN(?templateMotifCigarP06129MF_01531332) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531332, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP06129333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1346) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531334, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531334) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531334, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531334) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), '')))), '[^-]', ''))) AS ?step2347) .
BIND(((?step2347 + ?targetMotifMatchRegionMatchBeginPositionMF_01531335) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t348) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch353 faldo:location ?templateMotifSequenceMatchRegionP06129354 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129356 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531349 .
?templateMotifSequenceMatchRegionP06129354 faldo:begin ?templateMotifSequenceMatchBeginP06129355 .
?templateMotifSequenceMatchBeginP06129355 faldo:position ?templateMotifSequenceMatchBeginPositionP06129350 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129356 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch357 faldo:location ?targetMotifMatchRegionMatch358 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531360 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531351 .
?targetMotifMatchRegionMatch358 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531359 .
?targetMotifMatchRegionMatchBeginMF_01531359 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531352 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531360 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531349, 1, (STRLEN(?templateMotifCigarP06129MF_01531349) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531349, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP06129350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531351, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531351) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531351, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531351) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) .
BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_01531352) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531349, 1, (STRLEN(?templateMotifCigarP06129MF_01531349) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531349, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionP06129350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531351, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531351) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531351, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531351) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) .
BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_01531352) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t365) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((BOUND(?thisPositionOn31) && BOUND(?thisPositionOn32))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch370 faldo:location ?templateMotifSequenceMatchRegionP06129371 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129373 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531366 .
?templateMotifSequenceMatchRegionP06129371 faldo:begin ?templateMotifSequenceMatchBeginP06129372 .
?templateMotifSequenceMatchBeginP06129372 faldo:position ?templateMotifSequenceMatchBeginPositionP06129367 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129373 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch374 faldo:location ?targetMotifMatchRegionMatch375 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531377 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531368 .
?targetMotifMatchRegionMatch375 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531376 .
?targetMotifMatchRegionMatchBeginMF_01531376 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531369 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531377 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531366, 1, (STRLEN(?templateMotifCigarP06129MF_01531366) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531366, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP06129367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1378) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531368, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531368) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531368, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531368) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), '')))), '[^-]', ''))) AS ?step2379) .
BIND(((?step2379 + ?targetMotifMatchRegionMatchBeginPositionMF_01531369) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531366, 1, (STRLEN(?templateMotifCigarP06129MF_01531366) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531366, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP06129367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1380) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531368, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531368) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531368, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531368) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), '')))), '[^-]', ''))) AS ?step2381) .
BIND(((?step2381 + ?targetMotifMatchRegionMatchBeginPositionMF_01531369) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t382) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((BOUND(?thisPositionOn37) && BOUND(?thisPositionOn38))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch387 faldo:location ?templateMotifSequenceMatchRegionP06129388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531383 .
?templateMotifSequenceMatchRegionP06129388 faldo:begin ?templateMotifSequenceMatchBeginP06129389 .
?templateMotifSequenceMatchBeginP06129389 faldo:position ?templateMotifSequenceMatchBeginPositionP06129384 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129390 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch391 faldo:location ?targetMotifMatchRegionMatch392 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531394 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531385 .
?targetMotifMatchRegionMatch392 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531393 .
?targetMotifMatchRegionMatchBeginMF_01531393 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531386 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531394 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531383, 1, (STRLEN(?templateMotifCigarP06129MF_01531383) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531383, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionP06129384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1395) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531385, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531385) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531385, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531385) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), '')))), '[^-]', ''))) AS ?step2396) .
BIND(((?step2396 + ?targetMotifMatchRegionMatchBeginPositionMF_01531386) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531383, 1, (STRLEN(?templateMotifCigarP06129MF_01531383) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531383, CONCAT('^(?:-*[^-]){', STR(((277 - ?templateMotifSequenceMatchBeginPositionP06129384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1397) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531385, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531385) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531385, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531385) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), '')))), '[^-]', ''))) AS ?step2398) .
BIND(((?step2398 + ?targetMotifMatchRegionMatchBeginPositionMF_01531386) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t399) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((BOUND(?thisPositionOn43) && BOUND(?thisPositionOn44))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch404 faldo:location ?templateMotifSequenceMatchRegionP06129405 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129407 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531400 .
?templateMotifSequenceMatchRegionP06129405 faldo:begin ?templateMotifSequenceMatchBeginP06129406 .
?templateMotifSequenceMatchBeginP06129406 faldo:position ?templateMotifSequenceMatchBeginPositionP06129401 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129407 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch408 faldo:location ?targetMotifMatchRegionMatch409 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531411 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531402 .
?targetMotifMatchRegionMatch409 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531410 .
?targetMotifMatchRegionMatchBeginMF_01531410 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531403 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531411 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531400, 1, (STRLEN(?templateMotifCigarP06129MF_01531400) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531400, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionP06129401) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1412) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531402, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531402) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531402, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531402) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), '')))), '[^-]', ''))) AS ?step2413) .
BIND(((?step2413 + ?targetMotifMatchRegionMatchBeginPositionMF_01531403) - 1) AS ?thisPositionOn49) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531400, 1, (STRLEN(?templateMotifCigarP06129MF_01531400) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531400, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionP06129401) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1414) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531402, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531402) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531402, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531402) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), '')))), '[^-]', ''))) AS ?step2415) .
BIND(((?step2415 + ?targetMotifMatchRegionMatchBeginPositionMF_01531403) - 1) AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t416) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((BOUND(?thisPositionOn49) && BOUND(?thisPositionOn50))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch421 faldo:location ?templateMotifSequenceMatchRegionP06129422 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129424 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531417 .
?templateMotifSequenceMatchRegionP06129422 faldo:begin ?templateMotifSequenceMatchBeginP06129423 .
?templateMotifSequenceMatchBeginP06129423 faldo:position ?templateMotifSequenceMatchBeginPositionP06129418 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129424 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch425 faldo:location ?targetMotifMatchRegionMatch426 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531428 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531419 .
?targetMotifMatchRegionMatch426 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531427 .
?targetMotifMatchRegionMatchBeginMF_01531427 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531420 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531428 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531417, 1, (STRLEN(?templateMotifCigarP06129MF_01531417) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531417, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionP06129418) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1429) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531419, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531419) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531419, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531419) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), '')))), '[^-]', ''))) AS ?step2430) .
BIND(((?step2430 + ?targetMotifMatchRegionMatchBeginPositionMF_01531420) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531417, 1, (STRLEN(?templateMotifCigarP06129MF_01531417) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531417, CONCAT('^(?:-*[^-]){', STR(((325 - ?templateMotifSequenceMatchBeginPositionP06129418) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1431) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531419, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531419) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1431), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531419, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531419) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1431), '}'), '')))), '[^-]', ''))) AS ?step2432) .
BIND(((?step2432 + ?targetMotifMatchRegionMatchBeginPositionMF_01531420) - 1) AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t433) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((BOUND(?thisPositionOn55) && BOUND(?thisPositionOn56))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch438 faldo:location ?templateMotifSequenceMatchRegionP06129439 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129441 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531434 .
?templateMotifSequenceMatchRegionP06129439 faldo:begin ?templateMotifSequenceMatchBeginP06129440 .
?templateMotifSequenceMatchBeginP06129440 faldo:position ?templateMotifSequenceMatchBeginPositionP06129435 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129441 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch442 faldo:location ?targetMotifMatchRegionMatch443 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531445 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531436 .
?targetMotifMatchRegionMatch443 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531444 .
?targetMotifMatchRegionMatchBeginMF_01531444 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531437 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531445 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531434, 1, (STRLEN(?templateMotifCigarP06129MF_01531434) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531434, CONCAT('^(?:-*[^-]){', STR(((328 - ?templateMotifSequenceMatchBeginPositionP06129435) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1446) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531436, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531436) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531436, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1446), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531436, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531436) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531436, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1446), '}'), '')))), '[^-]', ''))) AS ?step2447) .
BIND(((?step2447 + ?targetMotifMatchRegionMatchBeginPositionMF_01531437) - 1) AS ?thisPositionOn61) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531434, 1, (STRLEN(?templateMotifCigarP06129MF_01531434) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531434, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionP06129435) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1448) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531436, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531436) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531436, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1448), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531436, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531436) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531436, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1448), '}'), '')))), '[^-]', ''))) AS ?step2449) .
BIND(((?step2449 + ?targetMotifMatchRegionMatchBeginPositionMF_01531437) - 1) AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t450) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER ((BOUND(?thisPositionOn61) && BOUND(?thisPositionOn62))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch455 faldo:location ?templateMotifSequenceMatchRegionP06129456 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129458 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531451 .
?templateMotifSequenceMatchRegionP06129456 faldo:begin ?templateMotifSequenceMatchBeginP06129457 .
?templateMotifSequenceMatchBeginP06129457 faldo:position ?templateMotifSequenceMatchBeginPositionP06129452 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129458 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch459 faldo:location ?targetMotifMatchRegionMatch460 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531462 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531453 .
?targetMotifMatchRegionMatch460 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531461 .
?targetMotifMatchRegionMatchBeginMF_01531461 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531454 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531462 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531451, 1, (STRLEN(?templateMotifCigarP06129MF_01531451) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531451, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionP06129452) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1463) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531453, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531453) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1463), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531453, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531453) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1463), '}'), '')))), '[^-]', ''))) AS ?step2464) .
BIND(((?step2464 + ?targetMotifMatchRegionMatchBeginPositionMF_01531454) - 1) AS ?thisPositionOn67) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531451, 1, (STRLEN(?templateMotifCigarP06129MF_01531451) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531451, CONCAT('^(?:-*[^-]){', STR(((369 - ?templateMotifSequenceMatchBeginPositionP06129452) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1465) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531453, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531453) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1465), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531453, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531453) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1465), '}'), '')))), '[^-]', ''))) AS ?step2466) .
BIND(((?step2466 + ?targetMotifMatchRegionMatchBeginPositionMF_01531454) - 1) AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t467) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((BOUND(?thisPositionOn67) && BOUND(?thisPositionOn68))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch472 faldo:location ?templateMotifSequenceMatchRegionP06129473 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129475 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531468 .
?templateMotifSequenceMatchRegionP06129473 faldo:begin ?templateMotifSequenceMatchBeginP06129474 .
?templateMotifSequenceMatchBeginP06129474 faldo:position ?templateMotifSequenceMatchBeginPositionP06129469 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129475 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch476 faldo:location ?targetMotifMatchRegionMatch477 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531479 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531470 .
?targetMotifMatchRegionMatch477 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531478 .
?targetMotifMatchRegionMatchBeginMF_01531478 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531471 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531479 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531468, 1, (STRLEN(?templateMotifCigarP06129MF_01531468) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531468, CONCAT('^(?:-*[^-]){', STR(((371 - ?templateMotifSequenceMatchBeginPositionP06129469) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1480) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531470, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531470) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1480), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531470, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531470) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1480), '}'), '')))), '[^-]', ''))) AS ?step2481) .
BIND(((?step2481 + ?targetMotifMatchRegionMatchBeginPositionMF_01531471) - 1) AS ?thisPositionOn73) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531468, 1, (STRLEN(?templateMotifCigarP06129MF_01531468) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531468, CONCAT('^(?:-*[^-]){', STR(((381 - ?templateMotifSequenceMatchBeginPositionP06129469) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1482) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531470, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531470) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1482), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531470, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531470) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1482), '}'), '')))), '[^-]', ''))) AS ?step2483) .
BIND(((?step2483 + ?targetMotifMatchRegionMatchBeginPositionMF_01531471) - 1) AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t484) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) .
FILTER ((BOUND(?thisPositionOn73) && BOUND(?thisPositionOn74))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch489 faldo:location ?templateMotifSequenceMatchRegionP06129490 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129492 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531485 .
?templateMotifSequenceMatchRegionP06129490 faldo:begin ?templateMotifSequenceMatchBeginP06129491 .
?templateMotifSequenceMatchBeginP06129491 faldo:position ?templateMotifSequenceMatchBeginPositionP06129486 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129492 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch493 faldo:location ?targetMotifMatchRegionMatch494 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531496 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531487 .
?targetMotifMatchRegionMatch494 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531495 .
?targetMotifMatchRegionMatchBeginMF_01531495 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531488 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531496 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531485, 1, (STRLEN(?templateMotifCigarP06129MF_01531485) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531485, CONCAT('^(?:-*[^-]){', STR(((385 - ?templateMotifSequenceMatchBeginPositionP06129486) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1497) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531487, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531487) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531487, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1497), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531487, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531487) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531487, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1497), '}'), '')))), '[^-]', ''))) AS ?step2498) .
BIND(((?step2498 + ?targetMotifMatchRegionMatchBeginPositionMF_01531488) - 1) AS ?thisPositionOn79) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531485, 1, (STRLEN(?templateMotifCigarP06129MF_01531485) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531485, CONCAT('^(?:-*[^-]){', STR(((400 - ?templateMotifSequenceMatchBeginPositionP06129486) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1499) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531487, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531487) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531487, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1499), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531487, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531487) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531487, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1499), '}'), '')))), '[^-]', ''))) AS ?step2500) .
BIND(((?step2500 + ?targetMotifMatchRegionMatchBeginPositionMF_01531488) - 1) AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t501) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse78) .
FILTER ((BOUND(?thisPositionOn79) && BOUND(?thisPositionOn80))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch506 faldo:location ?templateMotifSequenceMatchRegionP06129507 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129509 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531502 .
?templateMotifSequenceMatchRegionP06129507 faldo:begin ?templateMotifSequenceMatchBeginP06129508 .
?templateMotifSequenceMatchBeginP06129508 faldo:position ?templateMotifSequenceMatchBeginPositionP06129503 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129509 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch510 faldo:location ?targetMotifMatchRegionMatch511 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531513 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531504 .
?targetMotifMatchRegionMatch511 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531512 .
?targetMotifMatchRegionMatchBeginMF_01531512 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531505 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531513 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531502, 1, (STRLEN(?templateMotifCigarP06129MF_01531502) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531502, CONCAT('^(?:-*[^-]){', STR(((403 - ?templateMotifSequenceMatchBeginPositionP06129503) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1514) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531504, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531504) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531504, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1514), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531504, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531504) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531504, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1514), '}'), '')))), '[^-]', ''))) AS ?step2515) .
BIND(((?step2515 + ?targetMotifMatchRegionMatchBeginPositionMF_01531505) - 1) AS ?thisPositionOn85) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531502, 1, (STRLEN(?templateMotifCigarP06129MF_01531502) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531502, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP06129503) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1516) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531504, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531504) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531504, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1516), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531504, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531504) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531504, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1516), '}'), '')))), '[^-]', ''))) AS ?step2517) .
BIND(((?step2517 + ?targetMotifMatchRegionMatchBeginPositionMF_01531505) - 1) AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t518) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) .
FILTER ((BOUND(?thisPositionOn85) && BOUND(?thisPositionOn86))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch523 faldo:location ?templateMotifSequenceMatchRegionP06129524 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129526 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531519 .
?templateMotifSequenceMatchRegionP06129524 faldo:begin ?templateMotifSequenceMatchBeginP06129525 .
?templateMotifSequenceMatchBeginP06129525 faldo:position ?templateMotifSequenceMatchBeginPositionP06129520 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129526 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch527 faldo:location ?targetMotifMatchRegionMatch528 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531530 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531521 .
?targetMotifMatchRegionMatch528 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531529 .
?targetMotifMatchRegionMatchBeginMF_01531529 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531522 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531530 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531519, 1, (STRLEN(?templateMotifCigarP06129MF_01531519) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531519, CONCAT('^(?:-*[^-]){', STR(((434 - ?templateMotifSequenceMatchBeginPositionP06129520) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1531) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531521, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531521) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531521, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1531), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531521, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531521) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531521, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1531), '}'), '')))), '[^-]', ''))) AS ?step2532) .
BIND(((?step2532 + ?targetMotifMatchRegionMatchBeginPositionMF_01531522) - 1) AS ?thisPositionOn91) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531519, 1, (STRLEN(?templateMotifCigarP06129MF_01531519) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531519, CONCAT('^(?:-*[^-]){', STR(((443 - ?templateMotifSequenceMatchBeginPositionP06129520) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1533) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531521, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531521) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531521, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1533), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531521, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531521) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531521, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1533), '}'), '')))), '[^-]', ''))) AS ?step2534) .
BIND(((?step2534 + ?targetMotifMatchRegionMatchBeginPositionMF_01531522) - 1) AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t535) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) .
FILTER ((BOUND(?thisPositionOn91) && BOUND(?thisPositionOn92))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch540 faldo:location ?templateMotifSequenceMatchRegionP06129541 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129543 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531536 .
?templateMotifSequenceMatchRegionP06129541 faldo:begin ?templateMotifSequenceMatchBeginP06129542 .
?templateMotifSequenceMatchBeginP06129542 faldo:position ?templateMotifSequenceMatchBeginPositionP06129537 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129543 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch544 faldo:location ?targetMotifMatchRegionMatch545 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531547 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531538 .
?targetMotifMatchRegionMatch545 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531546 .
?targetMotifMatchRegionMatchBeginMF_01531546 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531539 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531547 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531536, 1, (STRLEN(?templateMotifCigarP06129MF_01531536) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531536, CONCAT('^(?:-*[^-]){', STR(((449 - ?templateMotifSequenceMatchBeginPositionP06129537) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1548) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531538, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531538) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531538, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1548), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531538, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531538) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531538, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1548), '}'), '')))), '[^-]', ''))) AS ?step2549) .
BIND(((?step2549 + ?targetMotifMatchRegionMatchBeginPositionMF_01531539) - 1) AS ?thisPositionOn97) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531536, 1, (STRLEN(?templateMotifCigarP06129MF_01531536) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531536, CONCAT('^(?:-*[^-]){', STR(((458 - ?templateMotifSequenceMatchBeginPositionP06129537) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1550) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531538, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531538) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531538, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1550), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531538, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531538) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531538, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1550), '}'), '')))), '[^-]', ''))) AS ?step2551) .
BIND(((?step2551 + ?targetMotifMatchRegionMatchBeginPositionMF_01531539) - 1) AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t552) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) .
FILTER ((BOUND(?thisPositionOn97) && BOUND(?thisPositionOn98))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch557 faldo:location ?templateMotifSequenceMatchRegionP06129558 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129560 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531553 .
?templateMotifSequenceMatchRegionP06129558 faldo:begin ?templateMotifSequenceMatchBeginP06129559 .
?templateMotifSequenceMatchBeginP06129559 faldo:position ?templateMotifSequenceMatchBeginPositionP06129554 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129560 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch561 faldo:location ?targetMotifMatchRegionMatch562 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531564 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531555 .
?targetMotifMatchRegionMatch562 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531563 .
?targetMotifMatchRegionMatchBeginMF_01531563 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531556 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531564 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531553, 1, (STRLEN(?templateMotifCigarP06129MF_01531553) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531553, CONCAT('^(?:-*[^-]){', STR(((473 - ?templateMotifSequenceMatchBeginPositionP06129554) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1565) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531555, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531555) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531555, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1565), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531555, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531555) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531555, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1565), '}'), '')))), '[^-]', ''))) AS ?step2566) .
BIND(((?step2566 + ?targetMotifMatchRegionMatchBeginPositionMF_01531556) - 1) AS ?thisPositionOn103) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531553, 1, (STRLEN(?templateMotifCigarP06129MF_01531553) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531553, CONCAT('^(?:-*[^-]){', STR(((490 - ?templateMotifSequenceMatchBeginPositionP06129554) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1567) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531555, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531555) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531555, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1567), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531555, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531555) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531555, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1567), '}'), '')))), '[^-]', ''))) AS ?step2568) .
BIND(((?step2568 + ?targetMotifMatchRegionMatchBeginPositionMF_01531556) - 1) AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t569) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse102) .
FILTER ((BOUND(?thisPositionOn103) && BOUND(?thisPositionOn104))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch574 faldo:location ?templateMotifSequenceMatchRegionP06129575 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129577 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531570 .
?templateMotifSequenceMatchRegionP06129575 faldo:begin ?templateMotifSequenceMatchBeginP06129576 .
?templateMotifSequenceMatchBeginP06129576 faldo:position ?templateMotifSequenceMatchBeginPositionP06129571 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129577 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch578 faldo:location ?targetMotifMatchRegionMatch579 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531581 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531572 .
?targetMotifMatchRegionMatch579 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531580 .
?targetMotifMatchRegionMatchBeginMF_01531580 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531573 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531581 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531570, 1, (STRLEN(?templateMotifCigarP06129MF_01531570) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531570, CONCAT('^(?:-*[^-]){', STR(((494 - ?templateMotifSequenceMatchBeginPositionP06129571) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1582) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531572, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531572) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1582), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531572, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531572) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1582), '}'), '')))), '[^-]', ''))) AS ?step2583) .
BIND(((?step2583 + ?targetMotifMatchRegionMatchBeginPositionMF_01531573) - 1) AS ?thisPositionOn109) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531570, 1, (STRLEN(?templateMotifCigarP06129MF_01531570) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531570, CONCAT('^(?:-*[^-]){', STR(((509 - ?templateMotifSequenceMatchBeginPositionP06129571) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1584) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531572, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531572) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1584), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531572, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531572) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1584), '}'), '')))), '[^-]', ''))) AS ?step2585) .
BIND(((?step2585 + ?targetMotifMatchRegionMatchBeginPositionMF_01531573) - 1) AS ?thisPositionOn110) .
BIND(?this AS ?pfs1t586) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse108) .
FILTER ((BOUND(?thisPositionOn109) && BOUND(?thisPositionOn110))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch591 faldo:location ?templateMotifSequenceMatchRegionP06129592 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129594 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531587 .
?templateMotifSequenceMatchRegionP06129592 faldo:begin ?templateMotifSequenceMatchBeginP06129593 .
?templateMotifSequenceMatchBeginP06129593 faldo:position ?templateMotifSequenceMatchBeginPositionP06129588 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129594 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch595 faldo:location ?targetMotifMatchRegionMatch596 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531598 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531589 .
?targetMotifMatchRegionMatch596 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531597 .
?targetMotifMatchRegionMatchBeginMF_01531597 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531590 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531598 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531587, 1, (STRLEN(?templateMotifCigarP06129MF_01531587) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531587, CONCAT('^(?:-*[^-]){', STR(((517 - ?templateMotifSequenceMatchBeginPositionP06129588) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1599) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531589, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531589) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531589, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1599), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531589, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531589) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531589, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1599), '}'), '')))), '[^-]', ''))) AS ?step2600) .
BIND(((?step2600 + ?targetMotifMatchRegionMatchBeginPositionMF_01531590) - 1) AS ?thisPositionOn115) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531587, 1, (STRLEN(?templateMotifCigarP06129MF_01531587) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531587, CONCAT('^(?:-*[^-]){', STR(((529 - ?templateMotifSequenceMatchBeginPositionP06129588) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1601) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531589, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531589) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531589, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1601), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531589, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531589) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531589, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1601), '}'), '')))), '[^-]', ''))) AS ?step2602) .
BIND(((?step2602 + ?targetMotifMatchRegionMatchBeginPositionMF_01531590) - 1) AS ?thisPositionOn116) .
BIND(?this AS ?pfs1t603) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse114) .
FILTER ((BOUND(?thisPositionOn115) && BOUND(?thisPositionOn116))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch608 faldo:location ?templateMotifSequenceMatchRegionP06129609 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129611 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531604 .
?templateMotifSequenceMatchRegionP06129609 faldo:begin ?templateMotifSequenceMatchBeginP06129610 .
?templateMotifSequenceMatchBeginP06129610 faldo:position ?templateMotifSequenceMatchBeginPositionP06129605 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129611 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch612 faldo:location ?targetMotifMatchRegionMatch613 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531615 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531606 .
?targetMotifMatchRegionMatch613 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531614 .
?targetMotifMatchRegionMatchBeginMF_01531614 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531607 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531615 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531604, 1, (STRLEN(?templateMotifCigarP06129MF_01531604) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531604, CONCAT('^(?:-*[^-]){', STR(((535 - ?templateMotifSequenceMatchBeginPositionP06129605) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1616) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531606, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531606) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531606, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1616), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531606, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531606) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531606, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1616), '}'), '')))), '[^-]', ''))) AS ?step2617) .
BIND(((?step2617 + ?targetMotifMatchRegionMatchBeginPositionMF_01531607) - 1) AS ?thisPositionOn121) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531604, 1, (STRLEN(?templateMotifCigarP06129MF_01531604) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531604, CONCAT('^(?:-*[^-]){', STR(((550 - ?templateMotifSequenceMatchBeginPositionP06129605) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1618) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531606, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531606) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531606, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1618), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531606, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531606) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531606, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1618), '}'), '')))), '[^-]', ''))) AS ?step2619) .
BIND(((?step2619 + ?targetMotifMatchRegionMatchBeginPositionMF_01531607) - 1) AS ?thisPositionOn122) .
BIND(?this AS ?pfs1t620) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse120) .
FILTER ((BOUND(?thisPositionOn121) && BOUND(?thisPositionOn122))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch625 faldo:location ?templateMotifSequenceMatchRegionP06129626 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129628 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531621 .
?templateMotifSequenceMatchRegionP06129626 faldo:begin ?templateMotifSequenceMatchBeginP06129627 .
?templateMotifSequenceMatchBeginP06129627 faldo:position ?templateMotifSequenceMatchBeginPositionP06129622 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129628 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch629 faldo:location ?targetMotifMatchRegionMatch630 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531632 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531623 .
?targetMotifMatchRegionMatch630 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531631 .
?targetMotifMatchRegionMatchBeginMF_01531631 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531624 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531632 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531621, 1, (STRLEN(?templateMotifCigarP06129MF_01531621) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531621, CONCAT('^(?:-*[^-]){', STR(((558 - ?templateMotifSequenceMatchBeginPositionP06129622) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1633) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531623, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531623) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531623, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1633), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531623, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531623) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531623, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1633), '}'), '')))), '[^-]', ''))) AS ?step2634) .
BIND(((?step2634 + ?targetMotifMatchRegionMatchBeginPositionMF_01531624) - 1) AS ?thisPositionOn127) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531621, 1, (STRLEN(?templateMotifCigarP06129MF_01531621) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531621, CONCAT('^(?:-*[^-]){', STR(((572 - ?templateMotifSequenceMatchBeginPositionP06129622) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1635) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531623, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531623) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531623, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1635), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531623, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531623) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531623, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1635), '}'), '')))), '[^-]', ''))) AS ?step2636) .
BIND(((?step2636 + ?targetMotifMatchRegionMatchBeginPositionMF_01531624) - 1) AS ?thisPositionOn128) .
BIND(?this AS ?pfs1t637) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse126) .
FILTER ((BOUND(?thisPositionOn127) && BOUND(?thisPositionOn128))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a124')) AS ?annotation124) .
BIND(?this AS ?pfs123) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch642 faldo:location ?templateMotifSequenceMatchRegionP06129643 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129645 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531638 .
?templateMotifSequenceMatchRegionP06129643 faldo:begin ?templateMotifSequenceMatchBeginP06129644 .
?templateMotifSequenceMatchBeginP06129644 faldo:position ?templateMotifSequenceMatchBeginPositionP06129639 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129645 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch646 faldo:location ?targetMotifMatchRegionMatch647 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531649 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531640 .
?targetMotifMatchRegionMatch647 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531648 .
?targetMotifMatchRegionMatchBeginMF_01531648 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531641 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531649 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531638, 1, (STRLEN(?templateMotifCigarP06129MF_01531638) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531638, CONCAT('^(?:-*[^-]){', STR(((585 - ?templateMotifSequenceMatchBeginPositionP06129639) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1650) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531640, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531640) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531640, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1650), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531640, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531640) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531640, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1650), '}'), '')))), '[^-]', ''))) AS ?step2651) .
BIND(((?step2651 + ?targetMotifMatchRegionMatchBeginPositionMF_01531641) - 1) AS ?thisPositionOn133) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531638, 1, (STRLEN(?templateMotifCigarP06129MF_01531638) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531638, CONCAT('^(?:-*[^-]){', STR(((596 - ?templateMotifSequenceMatchBeginPositionP06129639) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1652) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531640, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531640) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531640, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1652), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531640, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531640) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531640, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1652), '}'), '')))), '[^-]', ''))) AS ?step2653) .
BIND(((?step2653 + ?targetMotifMatchRegionMatchBeginPositionMF_01531641) - 1) AS ?thisPositionOn134) .
BIND(?this AS ?pfs1t654) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse132) .
FILTER ((BOUND(?thisPositionOn133) && BOUND(?thisPositionOn134))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch659 faldo:location ?templateMotifSequenceMatchRegionP06129660 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129662 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531655 .
?templateMotifSequenceMatchRegionP06129660 faldo:begin ?templateMotifSequenceMatchBeginP06129661 .
?templateMotifSequenceMatchBeginP06129661 faldo:position ?templateMotifSequenceMatchBeginPositionP06129656 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129662 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch663 faldo:location ?targetMotifMatchRegionMatch664 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531666 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531657 .
?targetMotifMatchRegionMatch664 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531665 .
?targetMotifMatchRegionMatchBeginMF_01531665 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531658 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531666 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531655, 1, (STRLEN(?templateMotifCigarP06129MF_01531655) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531655, CONCAT('^(?:-*[^-]){', STR(((602 - ?templateMotifSequenceMatchBeginPositionP06129656) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1667) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531657, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531657) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531657, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1667), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531657, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531657) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531657, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1667), '}'), '')))), '[^-]', ''))) AS ?step2668) .
BIND(((?step2668 + ?targetMotifMatchRegionMatchBeginPositionMF_01531658) - 1) AS ?thisPositionOn139) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531655, 1, (STRLEN(?templateMotifCigarP06129MF_01531655) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531655, CONCAT('^(?:-*[^-]){', STR(((614 - ?templateMotifSequenceMatchBeginPositionP06129656) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1669) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531657, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531657) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531657, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1669), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531657, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531657) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531657, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1669), '}'), '')))), '[^-]', ''))) AS ?step2670) .
BIND(((?step2670 + ?targetMotifMatchRegionMatchBeginPositionMF_01531658) - 1) AS ?thisPositionOn140) .
BIND(?this AS ?pfs1t671) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse138) .
FILTER ((BOUND(?thisPositionOn139) && BOUND(?thisPositionOn140))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch676 faldo:location ?templateMotifSequenceMatchRegionP06129677 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129679 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531672 .
?templateMotifSequenceMatchRegionP06129677 faldo:begin ?templateMotifSequenceMatchBeginP06129678 .
?templateMotifSequenceMatchBeginP06129678 faldo:position ?templateMotifSequenceMatchBeginPositionP06129673 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129679 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch680 faldo:location ?targetMotifMatchRegionMatch681 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531683 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531674 .
?targetMotifMatchRegionMatch681 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531682 .
?targetMotifMatchRegionMatchBeginMF_01531682 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531675 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531683 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531672, 1, (STRLEN(?templateMotifCigarP06129MF_01531672) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531672, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP06129673) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1684) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531674, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531674) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531674, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1684), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531674, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531674) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531674, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1684), '}'), '')))), '[^-]', ''))) AS ?step2685) .
BIND(((?step2685 + ?targetMotifMatchRegionMatchBeginPositionMF_01531675) - 1) AS ?thisPositionOn145) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531672, 1, (STRLEN(?templateMotifCigarP06129MF_01531672) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531672, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP06129673) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1686) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531674, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531674) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531674, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1686), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531674, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531674) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531674, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1686), '}'), '')))), '[^-]', ''))) AS ?step2687) .
BIND(((?step2687 + ?targetMotifMatchRegionMatchBeginPositionMF_01531675) - 1) AS ?thisPositionOn146) .
BIND(?this AS ?pfs1t688) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfsb143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfse144) .
FILTER ((BOUND(?thisPositionOn145) && BOUND(?thisPositionOn146))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a142')) AS ?annotation142) .
BIND(?this AS ?pfs141) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch693 faldo:location ?templateMotifSequenceMatchRegionP06129694 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129696 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531689 .
?templateMotifSequenceMatchRegionP06129694 faldo:begin ?templateMotifSequenceMatchBeginP06129695 .
?templateMotifSequenceMatchBeginP06129695 faldo:position ?templateMotifSequenceMatchBeginPositionP06129690 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129696 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch697 faldo:location ?targetMotifMatchRegionMatch698 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531700 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531691 .
?targetMotifMatchRegionMatch698 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531699 .
?targetMotifMatchRegionMatchBeginMF_01531699 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531692 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531700 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531689, 1, (STRLEN(?templateMotifCigarP06129MF_01531689) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531689, CONCAT('^(?:-*[^-]){', STR(((597 - ?templateMotifSequenceMatchBeginPositionP06129690) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1701) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531691, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531691) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1701), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531691, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531691) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1701), '}'), '')))), '[^-]', ''))) AS ?step2702) .
BIND(((?step2702 + ?targetMotifMatchRegionMatchBeginPositionMF_01531692) - 1) AS ?thisPositionOn151) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531689, 1, (STRLEN(?templateMotifCigarP06129MF_01531689) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531689, CONCAT('^(?:-*[^-]){', STR(((614 - ?templateMotifSequenceMatchBeginPositionP06129690) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1703) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531691, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531691) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1703), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531691, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531691) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1703), '}'), '')))), '[^-]', ''))) AS ?step2704) .
BIND(((?step2704 + ?targetMotifMatchRegionMatchBeginPositionMF_01531692) - 1) AS ?thisPositionOn152) .
BIND(?this AS ?pfs1t705) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfsb149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfse150) .
FILTER ((BOUND(?thisPositionOn151) && BOUND(?thisPositionOn152))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a148')) AS ?annotation148) .
BIND(?this AS ?pfs147) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch710 faldo:location ?templateMotifSequenceMatchRegionP06129711 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129713 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531706 .
?templateMotifSequenceMatchRegionP06129711 faldo:begin ?templateMotifSequenceMatchBeginP06129712 .
?templateMotifSequenceMatchBeginP06129712 faldo:position ?templateMotifSequenceMatchBeginPositionP06129707 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129713 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch714 faldo:location ?targetMotifMatchRegionMatch715 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531717 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531708 .
?targetMotifMatchRegionMatch715 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531716 .
?targetMotifMatchRegionMatchBeginMF_01531716 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531709 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531717 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531706, 1, (STRLEN(?templateMotifCigarP06129MF_01531706) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531706, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionP06129707) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1718) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531708, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531708) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531708, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1718), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531708, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531708) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531708, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1718), '}'), '')))), '[^-]', ''))) AS ?step2719) .
BIND(((?step2719 + ?targetMotifMatchRegionMatchBeginPositionMF_01531709) - 1) AS ?thisPositionOn158) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531706, 1, (STRLEN(?templateMotifCigarP06129MF_01531706) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531706, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionP06129707) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1720) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531708, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531708) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531708, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1720), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531708, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531708) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531708, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1720), '}'), '')))), '[^-]', ''))) AS ?step2721) .
BIND(((?step2721 + ?targetMotifMatchRegionMatchBeginPositionMF_01531709) - 1) AS ?thisPositionOn159) .
BIND(?this AS ?pfs1t722) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfsb155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn159))) AS ?pfse156) .
FILTER (REGEX('[VIGL][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn158, (?thisPositionOn159 - ?thisPositionOn158)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a154')) AS ?annotation154) .
BIND(?this AS ?pfs153) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch727 faldo:location ?templateMotifSequenceMatchRegionP06129728 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129730 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531723 .
?templateMotifSequenceMatchRegionP06129728 faldo:begin ?templateMotifSequenceMatchBeginP06129729 .
?templateMotifSequenceMatchBeginP06129729 faldo:position ?templateMotifSequenceMatchBeginPositionP06129724 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129730 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch731 faldo:location ?targetMotifMatchRegionMatch732 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531734 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531725 .
?targetMotifMatchRegionMatch732 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531733 .
?targetMotifMatchRegionMatchBeginMF_01531733 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531726 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531734 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531723, 1, (STRLEN(?templateMotifCigarP06129MF_01531723) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531723, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP06129724) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1735) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531725, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531725) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531725, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1735), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531725, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531725) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531725, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1735), '}'), '')))), '[^-]', ''))) AS ?step2736) .
BIND(((?step2736 + ?targetMotifMatchRegionMatchBeginPositionMF_01531726) - 1) AS ?thisPositionOn165) .
BIND(?thisPositionOn165 AS ?thisPositionOn166) .
BIND(?this AS ?pfs1t737) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn165))) AS ?pfsb162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn166))) AS ?pfse163) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn165, 1) = 'L')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a161')) AS ?annotation161) .
BIND(?this AS ?pfs160) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch742 faldo:location ?templateMotifSequenceMatchRegionP06129743 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129745 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531738 .
?templateMotifSequenceMatchRegionP06129743 faldo:begin ?templateMotifSequenceMatchBeginP06129744 .
?templateMotifSequenceMatchBeginP06129744 faldo:position ?templateMotifSequenceMatchBeginPositionP06129739 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129745 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch746 faldo:location ?targetMotifMatchRegionMatch747 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531749 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531740 .
?targetMotifMatchRegionMatch747 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531748 .
?targetMotifMatchRegionMatchBeginMF_01531748 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531741 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531749 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531738, 1, (STRLEN(?templateMotifCigarP06129MF_01531738) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531738, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP06129739) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1750) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531740, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531740) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531740, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1750), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531740, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531740) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531740, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1750), '}'), '')))), '[^-]', ''))) AS ?step2751) .
BIND(((?step2751 + ?targetMotifMatchRegionMatchBeginPositionMF_01531741) - 1) AS ?thisPositionOn172) .
BIND(?thisPositionOn172 AS ?thisPositionOn173) .
BIND(?this AS ?pfs1t752) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn172))) AS ?pfsb169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn173))) AS ?pfse170) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn172, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a168')) AS ?annotation168) .
BIND(?this AS ?pfs167) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch757 faldo:location ?templateMotifSequenceMatchRegionP06129758 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129760 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531753 .
?templateMotifSequenceMatchRegionP06129758 faldo:begin ?templateMotifSequenceMatchBeginP06129759 .
?templateMotifSequenceMatchBeginP06129759 faldo:position ?templateMotifSequenceMatchBeginPositionP06129754 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129760 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch761 faldo:location ?targetMotifMatchRegionMatch762 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531764 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531755 .
?targetMotifMatchRegionMatch762 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531763 .
?targetMotifMatchRegionMatchBeginMF_01531763 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531756 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531764 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531753, 1, (STRLEN(?templateMotifCigarP06129MF_01531753) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531753, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP06129754) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1765) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531755, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531755) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531755, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1765), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531755, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531755) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531755, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1765), '}'), '')))), '[^-]', ''))) AS ?step2766) .
BIND(((?step2766 + ?targetMotifMatchRegionMatchBeginPositionMF_01531756) - 1) AS ?thisPositionOn179) .
BIND(?thisPositionOn179 AS ?thisPositionOn180) .
BIND(?this AS ?pfs1t767) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn179))) AS ?pfsb176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn180))) AS ?pfse177) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn179, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a175')) AS ?annotation175) .
BIND(?this AS ?pfs174) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch772 faldo:location ?templateMotifSequenceMatchRegionP06129773 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129775 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531768 .
?templateMotifSequenceMatchRegionP06129773 faldo:begin ?templateMotifSequenceMatchBeginP06129774 .
?templateMotifSequenceMatchBeginP06129774 faldo:position ?templateMotifSequenceMatchBeginPositionP06129769 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129775 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch776 faldo:location ?targetMotifMatchRegionMatch777 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531779 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531770 .
?targetMotifMatchRegionMatch777 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531778 .
?targetMotifMatchRegionMatchBeginMF_01531778 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531771 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531779 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531768, 1, (STRLEN(?templateMotifCigarP06129MF_01531768) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531768, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP06129769) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1780) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531770, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531770) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1780), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531770, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531770) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1780), '}'), '')))), '[^-]', ''))) AS ?step2781) .
BIND(((?step2781 + ?targetMotifMatchRegionMatchBeginPositionMF_01531771) - 1) AS ?thisPositionOn186) .
BIND(?thisPositionOn186 AS ?thisPositionOn187) .
BIND(?this AS ?pfs1t782) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn186))) AS ?pfsb183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn187))) AS ?pfse184) .
FILTER (REGEX('[ASG]', SUBSTR(?thisSequenceValue, ?thisPositionOn186, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a182')) AS ?annotation182) .
BIND(?this AS ?pfs181) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch787 faldo:location ?templateMotifSequenceMatchRegionP06129788 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129790 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531783 .
?templateMotifSequenceMatchRegionP06129788 faldo:begin ?templateMotifSequenceMatchBeginP06129789 .
?templateMotifSequenceMatchBeginP06129789 faldo:position ?templateMotifSequenceMatchBeginPositionP06129784 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129790 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch791 faldo:location ?targetMotifMatchRegionMatch792 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531794 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531785 .
?targetMotifMatchRegionMatch792 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531793 .
?targetMotifMatchRegionMatchBeginMF_01531793 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531786 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531794 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531783, 1, (STRLEN(?templateMotifCigarP06129MF_01531783) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531783, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionP06129784) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1795) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531785, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531785) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531785, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1795), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531785, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531785) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531785, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1795), '}'), '')))), '[^-]', ''))) AS ?step2796) .
BIND(((?step2796 + ?targetMotifMatchRegionMatchBeginPositionMF_01531786) - 1) AS ?thisPositionOn193) .
BIND(?thisPositionOn193 AS ?thisPositionOn194) .
BIND(?this AS ?pfs1t797) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn193))) AS ?pfsb190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn194))) AS ?pfse191) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn193, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a189')) AS ?annotation189) .
BIND(?this AS ?pfs188) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch802 faldo:location ?templateMotifSequenceMatchRegionP06129803 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129805 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531798 .
?templateMotifSequenceMatchRegionP06129803 faldo:begin ?templateMotifSequenceMatchBeginP06129804 .
?templateMotifSequenceMatchBeginP06129804 faldo:position ?templateMotifSequenceMatchBeginPositionP06129799 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129805 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch806 faldo:location ?targetMotifMatchRegionMatch807 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531809 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531800 .
?targetMotifMatchRegionMatch807 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531808 .
?targetMotifMatchRegionMatchBeginMF_01531808 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531801 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531809 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531798, 1, (STRLEN(?templateMotifCigarP06129MF_01531798) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531798, CONCAT('^(?:-*[^-]){', STR(((517 - ?templateMotifSequenceMatchBeginPositionP06129799) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1810) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531800, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531800) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531800, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1810), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531800, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531800) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531800, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1810), '}'), '')))), '[^-]', ''))) AS ?step2811) .
BIND(((?step2811 + ?targetMotifMatchRegionMatchBeginPositionMF_01531801) - 1) AS ?thisPositionOn200) .
BIND(?thisPositionOn200 AS ?thisPositionOn201) .
BIND(?this AS ?pfs1t812) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn200))) AS ?pfsb197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn201))) AS ?pfse198) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn200, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a196')) AS ?annotation196) .
BIND(?this AS ?pfs195) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch817 faldo:location ?templateMotifSequenceMatchRegionP06129818 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129820 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531813 .
?templateMotifSequenceMatchRegionP06129818 faldo:begin ?templateMotifSequenceMatchBeginP06129819 .
?templateMotifSequenceMatchBeginP06129819 faldo:position ?templateMotifSequenceMatchBeginPositionP06129814 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129820 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch821 faldo:location ?targetMotifMatchRegionMatch822 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531824 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531815 .
?targetMotifMatchRegionMatch822 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531823 .
?targetMotifMatchRegionMatchBeginMF_01531823 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531816 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531824 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531813, 1, (STRLEN(?templateMotifCigarP06129MF_01531813) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531813, CONCAT('^(?:-*[^-]){', STR(((551 - ?templateMotifSequenceMatchBeginPositionP06129814) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1825) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531815, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531815) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531815, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1825), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531815, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531815) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531815, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1825), '}'), '')))), '[^-]', ''))) AS ?step2826) .
BIND(((?step2826 + ?targetMotifMatchRegionMatchBeginPositionMF_01531816) - 1) AS ?thisPositionOn207) .
BIND(?thisPositionOn207 AS ?thisPositionOn208) .
BIND(?this AS ?pfs1t827) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn207))) AS ?pfsb204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn208))) AS ?pfse205) .
FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn207, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a203')) AS ?annotation203) .
BIND(?this AS ?pfs202) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch832 faldo:location ?templateMotifSequenceMatchRegionP06129833 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129835 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531828 .
?templateMotifSequenceMatchRegionP06129833 faldo:begin ?templateMotifSequenceMatchBeginP06129834 .
?templateMotifSequenceMatchBeginP06129834 faldo:position ?templateMotifSequenceMatchBeginPositionP06129829 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129835 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch836 faldo:location ?targetMotifMatchRegionMatch837 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531839 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531830 .
?targetMotifMatchRegionMatch837 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531838 .
?targetMotifMatchRegionMatchBeginMF_01531838 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531831 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531839 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531828, 1, (STRLEN(?templateMotifCigarP06129MF_01531828) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531828, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP06129829) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1840) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531830, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531830) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531830, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1840), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531830, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531830) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531830, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1840), '}'), '')))), '[^-]', ''))) AS ?step2841) .
BIND(((?step2841 + ?targetMotifMatchRegionMatchBeginPositionMF_01531831) - 1) AS ?thisPositionOn214) .
BIND(?thisPositionOn214 AS ?thisPositionOn215) .
BIND(?this AS ?pfs1t842) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn214))) AS ?pfsb211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn215))) AS ?pfse212) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn214, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a210')) AS ?annotation210) .
BIND(?this AS ?pfs209) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch847 faldo:location ?templateMotifSequenceMatchRegionP06129848 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129850 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531843 .
?templateMotifSequenceMatchRegionP06129848 faldo:begin ?templateMotifSequenceMatchBeginP06129849 .
?templateMotifSequenceMatchBeginP06129849 faldo:position ?templateMotifSequenceMatchBeginPositionP06129844 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129850 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch851 faldo:location ?targetMotifMatchRegionMatch852 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531854 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531845 .
?targetMotifMatchRegionMatch852 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531853 .
?targetMotifMatchRegionMatchBeginMF_01531853 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531846 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531854 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531843, 1, (STRLEN(?templateMotifCigarP06129MF_01531843) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531843, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionP06129844) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1855) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531845, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531845) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531845, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1855), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531845, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531845) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531845, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1855), '}'), '')))), '[^-]', ''))) AS ?step2856) .
BIND(((?step2856 + ?targetMotifMatchRegionMatchBeginPositionMF_01531846) - 1) AS ?thisPositionOn221) .
BIND(?thisPositionOn221 AS ?thisPositionOn222) .
BIND(?this AS ?pfs1t857) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn221))) AS ?pfsb218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn222))) AS ?pfse219) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn221, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a217')) AS ?annotation217) .
BIND(?this AS ?pfs216) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch862 faldo:location ?templateMotifSequenceMatchRegionP06129863 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129865 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531858 .
?templateMotifSequenceMatchRegionP06129863 faldo:begin ?templateMotifSequenceMatchBeginP06129864 .
?templateMotifSequenceMatchBeginP06129864 faldo:position ?templateMotifSequenceMatchBeginPositionP06129859 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129865 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch866 faldo:location ?targetMotifMatchRegionMatch867 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531869 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531860 .
?targetMotifMatchRegionMatch867 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531868 .
?targetMotifMatchRegionMatchBeginMF_01531868 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531861 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531869 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531858, 1, (STRLEN(?templateMotifCigarP06129MF_01531858) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531858, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP06129859) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1870) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531860, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531860) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531860, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1870), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531860, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531860) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531860, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1870), '}'), '')))), '[^-]', ''))) AS ?step2871) .
BIND(((?step2871 + ?targetMotifMatchRegionMatchBeginPositionMF_01531861) - 1) AS ?thisPositionOn228) .
BIND(?thisPositionOn228 AS ?thisPositionOn229) .
BIND(?this AS ?pfs1t872) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn228))) AS ?pfsb225) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn229))) AS ?pfse226) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn228, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a224')) AS ?annotation224) .
BIND(?this AS ?pfs223) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch877 faldo:location ?templateMotifSequenceMatchRegionP06129878 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129880 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531873 .
?templateMotifSequenceMatchRegionP06129878 faldo:begin ?templateMotifSequenceMatchBeginP06129879 .
?templateMotifSequenceMatchBeginP06129879 faldo:position ?templateMotifSequenceMatchBeginPositionP06129874 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129880 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch881 faldo:location ?targetMotifMatchRegionMatch882 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531884 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531875 .
?targetMotifMatchRegionMatch882 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531883 .
?targetMotifMatchRegionMatchBeginMF_01531883 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531876 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531884 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531873, 1, (STRLEN(?templateMotifCigarP06129MF_01531873) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531873, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP06129874) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1885) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531875, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531875) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531875, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1885), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531875, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531875) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531875, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1885), '}'), '')))), '[^-]', ''))) AS ?step2886) .
BIND(((?step2886 + ?targetMotifMatchRegionMatchBeginPositionMF_01531876) - 1) AS ?thisPositionOn235) .
BIND(?thisPositionOn235 AS ?thisPositionOn236) .
BIND(?this AS ?pfs1t887) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn235))) AS ?pfsb232) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn236))) AS ?pfse233) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn235, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a231')) AS ?annotation231) .
BIND(?this AS ?pfs230) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch892 faldo:location ?templateMotifSequenceMatchRegionP06129893 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129895 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531888 .
?templateMotifSequenceMatchRegionP06129893 faldo:begin ?templateMotifSequenceMatchBeginP06129894 .
?templateMotifSequenceMatchBeginP06129894 faldo:position ?templateMotifSequenceMatchBeginPositionP06129889 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129895 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch896 faldo:location ?targetMotifMatchRegionMatch897 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531899 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531890 .
?targetMotifMatchRegionMatch897 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531898 .
?targetMotifMatchRegionMatchBeginMF_01531898 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531891 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531899 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531888, 1, (STRLEN(?templateMotifCigarP06129MF_01531888) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531888, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP06129889) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1900) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531890, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531890) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531890, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1900), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531890, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531890) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531890, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1900), '}'), '')))), '[^-]', ''))) AS ?step2901) .
BIND(((?step2901 + ?targetMotifMatchRegionMatchBeginPositionMF_01531891) - 1) AS ?thisPositionOn242) .
BIND(?thisPositionOn242 AS ?thisPositionOn243) .
BIND(?this AS ?pfs1t902) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn242))) AS ?pfsb239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn243))) AS ?pfse240) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn242, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a238')) AS ?annotation238) .
BIND(?this AS ?pfs237) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch907 faldo:location ?templateMotifSequenceMatchRegionP06129908 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129910 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531903 .
?templateMotifSequenceMatchRegionP06129908 faldo:begin ?templateMotifSequenceMatchBeginP06129909 .
?templateMotifSequenceMatchBeginP06129909 faldo:position ?templateMotifSequenceMatchBeginPositionP06129904 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129910 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch911 faldo:location ?targetMotifMatchRegionMatch912 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531914 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531905 .
?targetMotifMatchRegionMatch912 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531913 .
?targetMotifMatchRegionMatchBeginMF_01531913 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531906 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531914 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531903, 1, (STRLEN(?templateMotifCigarP06129MF_01531903) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531903, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP06129904) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1915) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531905, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531905) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531905, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1915), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531905, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531905) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531905, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1915), '}'), '')))), '[^-]', ''))) AS ?step2916) .
BIND(((?step2916 + ?targetMotifMatchRegionMatchBeginPositionMF_01531906) - 1) AS ?thisPositionOn249) .
BIND(?thisPositionOn249 AS ?thisPositionOn250) .
BIND(?this AS ?pfs1t917) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn249))) AS ?pfsb246) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn250))) AS ?pfse247) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn249, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a245')) AS ?annotation245) .
BIND(?this AS ?pfs244) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch922 faldo:location ?templateMotifSequenceMatchRegionP06129923 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129925 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531918 .
?templateMotifSequenceMatchRegionP06129923 faldo:begin ?templateMotifSequenceMatchBeginP06129924 .
?templateMotifSequenceMatchBeginP06129924 faldo:position ?templateMotifSequenceMatchBeginPositionP06129919 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129925 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch926 faldo:location ?targetMotifMatchRegionMatch927 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531929 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531920 .
?targetMotifMatchRegionMatch927 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531928 .
?targetMotifMatchRegionMatchBeginMF_01531928 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531921 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531929 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531918, 1, (STRLEN(?templateMotifCigarP06129MF_01531918) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531918, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP06129919) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1930) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531920, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531920) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531920, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1930), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531920, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531920) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531920, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1930), '}'), '')))), '[^-]', ''))) AS ?step2931) .
BIND(((?step2931 + ?targetMotifMatchRegionMatchBeginPositionMF_01531921) - 1) AS ?thisPositionOn256) .
BIND(?thisPositionOn256 AS ?thisPositionOn257) .
BIND(?this AS ?pfs1t932) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn256))) AS ?pfsb253) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn257))) AS ?pfse254) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn256, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a252')) AS ?annotation252) .
BIND(?this AS ?pfs251) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch937 faldo:location ?templateMotifSequenceMatchRegionP06129938 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129940 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531933 .
?templateMotifSequenceMatchRegionP06129938 faldo:begin ?templateMotifSequenceMatchBeginP06129939 .
?templateMotifSequenceMatchBeginP06129939 faldo:position ?templateMotifSequenceMatchBeginPositionP06129934 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129940 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch941 faldo:location ?targetMotifMatchRegionMatch942 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531944 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531935 .
?targetMotifMatchRegionMatch942 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531943 .
?targetMotifMatchRegionMatchBeginMF_01531943 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531936 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531944 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531933, 1, (STRLEN(?templateMotifCigarP06129MF_01531933) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531933, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP06129934) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1945) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531935, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531935) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531935, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1945), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531935, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531935) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531935, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1945), '}'), '')))), '[^-]', ''))) AS ?step2946) .
BIND(((?step2946 + ?targetMotifMatchRegionMatchBeginPositionMF_01531936) - 1) AS ?thisPositionOn263) .
BIND(?thisPositionOn263 AS ?thisPositionOn264) .
BIND(?this AS ?pfs1t947) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn263))) AS ?pfsb260) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn264))) AS ?pfse261) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn263, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a259')) AS ?annotation259) .
BIND(?this AS ?pfs258) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch952 faldo:location ?templateMotifSequenceMatchRegionP06129953 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129955 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531948 .
?templateMotifSequenceMatchRegionP06129953 faldo:begin ?templateMotifSequenceMatchBeginP06129954 .
?templateMotifSequenceMatchBeginP06129954 faldo:position ?templateMotifSequenceMatchBeginPositionP06129949 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129955 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch956 faldo:location ?targetMotifMatchRegionMatch957 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531959 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531950 .
?targetMotifMatchRegionMatch957 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531958 .
?targetMotifMatchRegionMatchBeginMF_01531958 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531951 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531959 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531948, 1, (STRLEN(?templateMotifCigarP06129MF_01531948) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531948, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP06129949) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1960) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531950, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531950) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531950, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1960), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531950, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531950) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531950, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1960), '}'), '')))), '[^-]', ''))) AS ?step2961) .
BIND(((?step2961 + ?targetMotifMatchRegionMatchBeginPositionMF_01531951) - 1) AS ?thisPositionOn270) .
BIND(?thisPositionOn270 AS ?thisPositionOn271) .
BIND(?this AS ?pfs1t962) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn270))) AS ?pfsb267) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn271))) AS ?pfse268) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn270, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a266')) AS ?annotation266) .
BIND(?this AS ?pfs265) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch967 faldo:location ?templateMotifSequenceMatchRegionP06129968 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129970 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531963 .
?templateMotifSequenceMatchRegionP06129968 faldo:begin ?templateMotifSequenceMatchBeginP06129969 .
?templateMotifSequenceMatchBeginP06129969 faldo:position ?templateMotifSequenceMatchBeginPositionP06129964 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129970 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch971 faldo:location ?targetMotifMatchRegionMatch972 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531974 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531965 .
?targetMotifMatchRegionMatch972 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531973 .
?targetMotifMatchRegionMatchBeginMF_01531973 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531966 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531974 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531963, 1, (STRLEN(?templateMotifCigarP06129MF_01531963) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531963, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP06129964) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1975) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531965, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531965) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531965, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1975), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531965, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531965) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531965, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1975), '}'), '')))), '[^-]', ''))) AS ?step2976) .
BIND(((?step2976 + ?targetMotifMatchRegionMatchBeginPositionMF_01531966) - 1) AS ?thisPositionOn277) .
BIND(?thisPositionOn277 AS ?thisPositionOn278) .
BIND(?this AS ?pfs1t977) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn277))) AS ?pfsb274) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn278))) AS ?pfse275) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn277, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a273')) AS ?annotation273) .
BIND(?this AS ?pfs272) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch982 faldo:location ?templateMotifSequenceMatchRegionP06129983 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06129985 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531978 .
?templateMotifSequenceMatchRegionP06129983 faldo:begin ?templateMotifSequenceMatchBeginP06129984 .
?templateMotifSequenceMatchBeginP06129984 faldo:position ?templateMotifSequenceMatchBeginPositionP06129979 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP06129985 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch986 faldo:location ?targetMotifMatchRegionMatch987 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01531989 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531980 .
?targetMotifMatchRegionMatch987 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01531988 .
?targetMotifMatchRegionMatchBeginMF_01531988 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531981 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01531989 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:91347 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531978, 1, (STRLEN(?templateMotifCigarP06129MF_01531978) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531978, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP06129979) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1990) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531980, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531980) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531980, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1990), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531980, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531980) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531980, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1990), '}'), '')))), '[^-]', ''))) AS ?step2991) .
BIND(((?step2991 + ?targetMotifMatchRegionMatchBeginPositionMF_01531981) - 1) AS ?thisPositionOn283) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531978, 1, (STRLEN(?templateMotifCigarP06129MF_01531978) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531978, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP06129979) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1992) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531980, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531980) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531980, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1992), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531980, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531980) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531980, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1992), '}'), '')))), '[^-]', ''))) AS ?step2993) .
BIND(((?step2993 + ?targetMotifMatchRegionMatchBeginPositionMF_01531981) - 1) AS ?thisPositionOn284) .
BIND(?this AS ?pfs2t994) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn283))) AS ?pfsb281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn284))) AS ?pfse282) .
FILTER ((BOUND(?thisPositionOn283) && BOUND(?thisPositionOn284))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a280')) AS ?annotation280) .
BIND(?this AS ?pfs279) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch999 faldo:location ?templateMotifSequenceMatchRegionP061291000 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP061291002 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06129MF_01531995 .
?templateMotifSequenceMatchRegionP061291000 faldo:begin ?templateMotifSequenceMatchBeginP061291001 .
?templateMotifSequenceMatchBeginP061291001 faldo:position ?templateMotifSequenceMatchBeginPositionP06129996 ;
faldo:reference isoform:P06129-1 .
?templateMotifSequenceProfileAlignmentOperationP061291002 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?targetMotifMatch1003 faldo:location ?targetMotifMatchRegionMatch1004 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_015311006 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06129MF_01531997 .
?targetMotifMatchRegionMatch1004 faldo:begin ?targetMotifMatchRegionMatchBeginMF_015311005 .
?targetMotifMatchRegionMatchBeginMF_015311005 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01531998 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_015311006 edam:has_input signature:MF_01531 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:91347 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531995, 1, (STRLEN(?templateMotifCigarP06129MF_01531995) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531995, CONCAT('^(?:-*[^-]){', STR(((597 - ?templateMotifSequenceMatchBeginPositionP06129996) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11007) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531997, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531997) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531997, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11007), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531997, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531997) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531997, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11007), '}'), '')))), '[^-]', ''))) AS ?step21008) .
BIND(((?step21008 + ?targetMotifMatchRegionMatchBeginPositionMF_01531998) - 1) AS ?thisPositionOn289) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06129MF_01531995, 1, (STRLEN(?templateMotifCigarP06129MF_01531995) - STRLEN(REPLACE(?templateMotifCigarP06129MF_01531995, CONCAT('^(?:-*[^-]){', STR(((614 - ?templateMotifSequenceMatchBeginPositionP06129996) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11009) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06129MF_01531997, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531997) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531997, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11009), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06129MF_01531997, 1, (STRLEN(?targetMotifMatchCigarP06129MF_01531997) - STRLEN(REPLACE(?targetMotifMatchCigarP06129MF_01531997, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11009), '}'), '')))), '[^-]', ''))) AS ?step21010) .
BIND(((?step21010 + ?targetMotifMatchRegionMatchBeginPositionMF_01531998) - 1) AS ?thisPositionOn290) .
BIND(?this AS ?pfs2t1011) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn289))) AS ?pfsb287) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn290))) AS ?pfse288) .
FILTER ((BOUND(?thisPositionOn289) && BOUND(?thisPositionOn290))) .
BIND(URI(CONCAT(STR(?this), '#MF_01531a286')) AS ?annotation286) .
BIND(?this AS ?pfs285) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this up:annotation ?samsignal1012 ;
up:sequence ?thisSequence .
?samsignal1012 up:range ?samsignalr1013 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr1013 faldo:begin ?samsignalb1014 ;
faldo:end ?samsignale1015 .
?samsignalb1014 faldo:position ?samsignalbp1016 ;
faldo:reference ?thisSequence .
?samsignale1015 faldo:position ?samsignalep1017 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam291) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01531a297')) AS ?keyword297) .
}
"xsd:string |
