| http://purl.uniprot.org/unirules/MF_03143#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:840965 up:source unirule:MF_03143 .
_:840966 up:ecName '4.2.3.4' ;
up:fullName '3-dehydroquinate synthase' ;
up:shortName 'DHQS' ;
rdf:type up:Structured_Name .
_:840967 up:source unirule:MF_03143 .
_:840968 up:ecName '2.5.1.19' ;
up:fullName '3-phosphoshikimate 1-carboxyvinyltransferase' ;
rdf:type up:Structured_Name .
_:840969 up:fullName '5-enolpyruvylshikimate-3-phosphate synthase' ;
up:shortName 'EPSP synthase' ,
'EPSPS' ;
rdf:type up:Structured_Name .
_:840970 up:source unirule:MF_03143 .
_:840971 up:ecName '2.7.1.71' ;
up:fullName 'Shikimate kinase' ;
up:shortName 'SK' ;
rdf:type up:Structured_Name .
_:840972 up:source unirule:MF_03143 .
_:840973 up:ecName '4.2.1.10' ;
up:fullName '3-dehydroquinate dehydratase' ;
up:shortName '3-dehydroquinase' ;
rdf:type up:Structured_Name .
_:840974 up:source unirule:MF_03143 .
_:840975 up:ecName '1.1.1.25' ;
up:fullName 'Shikimate dehydrogenase' ;
rdf:type up:Structured_Name .
_:840976 up:source unirule:MF_03143 .
_:840977 up:source unirule:MF_03143 .
_:840978 up:source unirule:MF_03143 .
_:840979 up:source unirule:MF_03143 .
_:840980 up:source unirule:MF_03143 .
_:840981 up:source unirule:MF_03143 .
_:840982 up:source unirule:MF_03143 .
_:840983 up:source unirule:MF_03143 .
_:840984 up:source unirule:MF_03143 .
_:840985 up:source unirule:MF_03143 .
_:840986 up:source unirule:MF_03143 .
_:840987 up:source unirule:MF_03143 .
_:840988 up:source unirule:MF_03143 .
_:840989 up:source unirule:MF_03143 .
_:840990 up:source unirule:MF_03143 .
_:840991 up:source unirule:MF_03143 .
_:840992 up:source unirule:MF_03143 .
_:840993 up:source unirule:MF_03143 .
_:840994 up:source unirule:MF_03143 .
_:840995 up:source unirule:MF_03143 .
_:840996 up:source unirule:MF_03143 .
_:840997 up:source unirule:MF_03143 .
_:840998 up:source unirule:MF_03143 .
_:840999 up:source unirule:MF_03143 .
_:841000 up:source unirule:MF_03143 .
_:841001 up:source unirule:MF_03143 .
_:841002 up:source unirule:MF_03143 .
_:841003 up:source unirule:MF_03143 .
_:841004 up:source unirule:MF_03143 .
_:841005 up:source unirule:MF_03143 .
_:841006 up:source unirule:MF_03143 .
_:841007 up:source unirule:MF_03143 .
_:841008 up:source unirule:MF_03143 .
_:841009 up:source unirule:MF_03143 .
_:841010 up:source unirule:MF_03143 .
_:841011 up:source unirule:MF_03143 .
_:841012 up:source unirule:MF_03143 .
_:841013 up:source unirule:MF_03143 .
_:841014 up:source unirule:MF_03143 .
_:841015 up:source unirule:MF_03143 .
_:841016 up:source unirule:MF_03143 .
_:841017 up:source unirule:MF_03143 .
_:841018 up:source unirule:MF_03143 .
_:841019 up:source unirule:MF_03143 .
_:841020 up:source unirule:MF_03143 .
_:841021 up:source unirule:MF_03143 .
_:841022 up:source unirule:MF_03143 .
_:841023 up:source unirule:MF_03143 .
_:841024 up:source unirule:MF_03143 .
_:841025 up:source unirule:MF_03143 .
_:841026 up:source unirule:MF_03143 .
_:841027 up:source unirule:MF_03143 .
_:841028 up:source unirule:MF_03143 .
_:841029 up:source unirule:MF_03143 .
_:841030 up:source unirule:MF_03143 .
_:841031 up:source unirule:MF_03143 .
_:841032 up:source unirule:MF_03143 .
_:841033 up:source unirule:MF_03143 .
_:841034 up:source unirule:MF_03143 .
_:841035 up:source unirule:MF_03143 .
_:841036 up:source unirule:MF_03143 .
_:841037 up:source unirule:MF_03143 .
_:841038 up:source unirule:MF_03143 .
_:841039 up:source unirule:MF_03143 .
_:841040 up:source unirule:MF_03143 .
_:841041 up:source unirule:MF_03143 .
_:841042 up:source unirule:MF_03143 .
_:841043 up:source unirule:MF_03143 .
_:841044 up:source unirule:MF_03143 .
_:841045 up:source unirule:MF_03143 .
_:841046 up:source unirule:MF_03143 .
_:841047 up:source unirule:MF_03143 .
_:841048 up:source unirule:MF_03143 .
_:841049 up:source unirule:MF_03143 .
_:841050 up:source unirule:MF_03143 .
?this up:annotation ?annotation6 ,
?annotation7 ,
?annotation9 ,
?annotation11 ,
?annotation13 ,
?annotation15 ,
?annotation17 ,
?annotation18 ,
?annotation19 ,
?annotation20 ,
?annotation21 ,
?annotation22 ,
?annotation23 ,
?annotation24 ,
?annotation26 ,
?annotation27 ,
?annotation28 ,
?annotation29 ,
?annotation30 ;
up:classifiedWith GO:0003855 ,
GO:0003856 ,
GO:0003866 ,
GO:0004764 ,
GO:0004765 ,
GO:0005524 ,
GO:0005737 ,
GO:0009073 ,
GO:0009423 ,
GO:0046872 ,
keyword:28 ,
keyword:418 ,
keyword:456 ,
keyword:479 ,
keyword:511 ,
keyword:521 ,
keyword:547 ,
keyword:560 ,
keyword:57 ,
keyword:67 ,
keyword:808 ,
keyword:862 ,
keyword:963 ;
up:domain ?namedpart1 ,
?namedpart2 ,
?namedpart3 ,
?namedpart4 ,
?namedpart5 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Pentafunctional AROM polypeptide' ;
rdf:type up:Structured_Name .
?namedpart1 up:recommendedName _:840966 .
?namedpart2 up:alternativeName _:840969 ;
up:recommendedName _:840968 .
?namedpart3 up:recommendedName _:840971 .
?namedpart4 up:recommendedName _:840973 .
?namedpart5 up:recommendedName _:840975 .
?annotation6 a up:Function_Annotation ;
rdfs:comment 'The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.' .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 up:activity ?activity10 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity10 up:catalyticActivity ;
up:enzymeClass .
?annotation11 up:activity ?activity12 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity12 up:catalyticActivity ;
up:enzymeClass .
?annotation13 up:activity ?activity14 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity14 up:catalyticActivity ;
up:enzymeClass .
?annotation15 up:activity ?activity16 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity16 up:catalyticActivity ;
up:enzymeClass .
?annotation17 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Zn(2+) ions per subunit.' .
?annotation18 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 2/7.' .
?annotation19 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 3/7.' .
?annotation20 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 4/7.' .
?annotation21 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 5/7.' .
?annotation22 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 6/7.' .
?annotation23 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation24 a up:Subcellular_Location_Annotation .
?annotation24li25 up:cellularComponent .
?annotation26 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.' .
?annotation27 a up:Similarity_Annotation ;
rdfs:comment 'In the 2nd section; belongs to the EPSP synthase family.' .
?annotation28 a up:Similarity_Annotation ;
rdfs:comment 'In the 3rd section; belongs to the shikimate kinase family.' .
?annotation29 a up:Similarity_Annotation ;
rdfs:comment 'In the 4th section; belongs to the type-I 3-dehydroquinase family.' .
?annotation30 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the shikimate dehydrogenase family.' .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Region_Annotation ;
rdfs:comment '3-dehydroquinate synthase' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'EPSP synthase' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Shikimate kinase' .
?pfsb49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
rdf:type up:Region_Annotation ;
rdfs:comment '3-dehydroquinase' .
?pfsb55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Shikimate dehydrogenase' .
?pfsb61 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:57540 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:57540 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:57540 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:57540 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:57540 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:30616 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf chebi:58394 .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation .
?pfsb116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand118 rdfs:subClassOf chebi:58394 .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; for 3-dehydroquinate synthase activity' .
?pfsb123 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfs127 up:annotation ?annotation128 .
?annotation128 faldo:begin ?pfsb129 ;
faldo:end ?pfse130 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; for 3-dehydroquinate synthase activity' .
?pfsb129 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfse130 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?pfs133 up:annotation ?annotation134 .
?annotation134 faldo:begin ?pfsb135 ;
faldo:end ?pfse136 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'For EPSP synthase activity' .
?pfsb135 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?pfse136 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?pfs139 up:annotation ?annotation140 .
?annotation140 faldo:begin ?pfsb141 ;
faldo:end ?pfse142 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; for 3-dehydroquinate dehydratase activity' .
?pfsb141 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
?pfse142 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?pfs145 up:annotation ?annotation146 .
?annotation146 faldo:begin ?pfsb147 ;
faldo:end ?pfse148 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with substrate; for 3-dehydroquinate dehydratase activity' .
?pfsb147 faldo:position ?thisPositionOn149 ;
rdf:type faldo:ExactPosition .
?pfse148 faldo:position ?thisPositionOn150 ;
rdf:type faldo:ExactPosition .
?pfs151 up:annotation ?annotation152 .
?annotation152 faldo:begin ?pfsb153 ;
faldo:end ?pfse154 ;
up:ligand ?ligand155 ;
rdf:type up:Binding_Site_Annotation .
?pfsb153 faldo:position ?thisPositionOn156 ;
rdf:type faldo:ExactPosition .
?pfse154 faldo:position ?thisPositionOn157 ;
rdf:type faldo:ExactPosition .
?ligand155 rdfs:subClassOf chebi:29105 .
?pfs158 up:annotation ?annotation159 .
?annotation159 faldo:begin ?pfsb160 ;
faldo:end ?pfse161 ;
up:ligand ?ligand162 ;
rdf:type up:Binding_Site_Annotation .
?pfsb160 faldo:position ?thisPositionOn163 ;
rdf:type faldo:ExactPosition .
?pfse161 faldo:position ?thisPositionOn164 ;
rdf:type faldo:ExactPosition .
?ligand162 rdfs:subClassOf chebi:29105 .
?pfs165 up:annotation ?annotation166 .
?annotation166 faldo:begin ?pfsb167 ;
faldo:end ?pfse168 ;
up:ligand ?ligand169 ;
rdf:type up:Binding_Site_Annotation .
?pfsb167 faldo:position ?thisPositionOn170 ;
rdf:type faldo:ExactPosition .
?pfse168 faldo:position ?thisPositionOn171 ;
rdf:type faldo:ExactPosition .
?ligand169 rdfs:subClassOf chebi:29105 .
?pfs172 up:annotation ?annotation173 .
?annotation173 faldo:begin ?pfsb174 ;
faldo:end ?pfse175 ;
up:ligand ?ligand176 ;
rdf:type up:Binding_Site_Annotation .
?pfsb174 faldo:position ?thisPositionOn177 ;
rdf:type faldo:ExactPosition .
?pfse175 faldo:position ?thisPositionOn178 ;
rdf:type faldo:ExactPosition .
?ligand176 rdfs:subClassOf chebi:57540 .
?pfs179 up:annotation ?annotation180 .
?annotation180 faldo:begin ?pfsb181 ;
faldo:end ?pfse182 ;
up:ligand ?ligand183 ;
rdf:type up:Binding_Site_Annotation .
?pfsb181 faldo:position ?thisPositionOn184 ;
rdf:type faldo:ExactPosition .
?pfse182 faldo:position ?thisPositionOn185 ;
rdf:type faldo:ExactPosition .
?ligand183 rdfs:subClassOf chebi:58394 .
?pfs186 up:annotation ?annotation187 .
?annotation187 faldo:begin ?pfsb188 ;
faldo:end ?pfse189 ;
up:ligand ?ligand190 ;
rdf:type up:Binding_Site_Annotation .
?pfsb188 faldo:position ?thisPositionOn191 ;
rdf:type faldo:ExactPosition .
?pfse189 faldo:position ?thisPositionOn192 ;
rdf:type faldo:ExactPosition .
?ligand190 rdfs:subClassOf chebi:58394 .
?pfs193 up:annotation ?annotation194 .
?annotation194 faldo:begin ?pfsb195 ;
faldo:end ?pfse196 ;
up:ligand ?ligand197 ;
rdf:type up:Binding_Site_Annotation .
?pfsb195 faldo:position ?thisPositionOn198 ;
rdf:type faldo:ExactPosition .
?pfse196 faldo:position ?thisPositionOn199 ;
rdf:type faldo:ExactPosition .
?ligand197 rdfs:subClassOf chebi:58394 .
?pfs200 up:annotation ?annotation201 .
?annotation201 faldo:begin ?pfsb202 ;
faldo:end ?pfse203 ;
up:ligand ?ligand204 ;
rdf:type up:Binding_Site_Annotation .
?pfsb202 faldo:position ?thisPositionOn205 ;
rdf:type faldo:ExactPosition .
?pfse203 faldo:position ?thisPositionOn206 ;
rdf:type faldo:ExactPosition .
?ligand204 rdfs:subClassOf chebi:57540 .
?pfs207 up:annotation ?annotation208 .
?annotation208 faldo:begin ?pfsb209 ;
faldo:end ?pfse210 ;
up:ligand ?ligand211 ;
rdf:type up:Binding_Site_Annotation .
?pfsb209 faldo:position ?thisPositionOn212 ;
rdf:type faldo:ExactPosition .
?pfse210 faldo:position ?thisPositionOn213 ;
rdf:type faldo:ExactPosition .
?ligand211 rdfs:subClassOf chebi:58394 .
?pfs214 up:annotation ?annotation215 .
?annotation215 faldo:begin ?pfsb216 ;
faldo:end ?pfse217 ;
up:ligand ?ligand218 ;
rdf:type up:Binding_Site_Annotation .
?pfsb216 faldo:position ?thisPositionOn219 ;
rdf:type faldo:ExactPosition .
?pfse217 faldo:position ?thisPositionOn220 ;
rdf:type faldo:ExactPosition .
?ligand218 rdfs:subClassOf chebi:57540 .
?pfs221 up:annotation ?annotation222 .
?annotation222 faldo:begin ?pfsb223 ;
faldo:end ?pfse224 ;
up:ligand ?ligand225 ;
rdf:type up:Binding_Site_Annotation .
?pfsb223 faldo:position ?thisPositionOn226 ;
rdf:type faldo:ExactPosition .
?pfse224 faldo:position ?thisPositionOn227 ;
rdf:type faldo:ExactPosition .
?ligand225 rdfs:subClassOf chebi:58394 .
?pfs228 up:annotation ?annotation229 .
?annotation229 faldo:begin ?pfsb230 ;
faldo:end ?pfse231 ;
up:ligand ?ligand232 ;
rdf:type up:Binding_Site_Annotation .
?pfsb230 faldo:position ?thisPositionOn233 ;
rdf:type faldo:ExactPosition .
?pfse231 faldo:position ?thisPositionOn234 ;
rdf:type faldo:ExactPosition .
?ligand232 rdfs:subClassOf chebi:58394 .
?pfs235 up:annotation ?annotation236 .
?annotation236 faldo:begin ?pfsb237 ;
faldo:end ?pfse238 ;
up:ligand ?ligand239 ;
rdf:type up:Binding_Site_Annotation .
?pfsb237 faldo:position ?thisPositionOn240 ;
rdf:type faldo:ExactPosition .
?pfse238 faldo:position ?thisPositionOn241 ;
rdf:type faldo:ExactPosition .
?ligand239 rdfs:subClassOf chebi:58394 .
?pfs242 up:annotation ?annotation243 .
?annotation243 faldo:begin ?pfsb244 ;
faldo:end ?pfse245 ;
up:ligand ?ligand246 ;
rdf:type up:Binding_Site_Annotation .
?pfsb244 faldo:position ?thisPositionOn247 ;
rdf:type faldo:ExactPosition .
?pfse245 faldo:position ?thisPositionOn248 ;
rdf:type faldo:ExactPosition .
?ligand246 rdfs:subClassOf chebi:58394 .
_:841051 a rdf:Statement ;
up:attribution _:840965 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:841052 a rdf:Statement ;
up:attribution _:840967 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:841053 a rdf:Statement ;
up:attribution _:840970 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:841054 a rdf:Statement ;
up:attribution _:840972 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart3 .
_:841055 a rdf:Statement ;
up:attribution _:840974 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart4 .
_:841056 a rdf:Statement ;
up:attribution _:840976 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart5 .
_:841057 a rdf:Statement ;
up:attribution _:840977 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:841058 a rdf:Statement ;
up:attribution _:840978 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:841059 a rdf:Statement ;
up:attribution _:840979 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:841060 a rdf:Statement ;
up:attribution _:840980 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:841061 a rdf:Statement ;
up:attribution _:840981 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:841062 a rdf:Statement ;
up:attribution _:840982 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:841063 a rdf:Statement ;
up:attribution _:840983 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:841064 a rdf:Statement ;
up:attribution _:840984 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:841065 a rdf:Statement ;
up:attribution _:840985 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:841066 a rdf:Statement ;
up:attribution _:840986 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:841067 a rdf:Statement ;
up:attribution _:840987 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:841068 a rdf:Statement ;
up:attribution _:840988 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:841069 a rdf:Statement ;
up:attribution _:840989 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:841070 a rdf:Statement ;
up:attribution _:840990 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:841071 a rdf:Statement ;
up:attribution _:840991 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:841072 a rdf:Statement ;
up:attribution _:840992 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:841073 a rdf:Statement ;
up:attribution _:840993 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:841074 a rdf:Statement ;
up:attribution _:840994 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:841075 a rdf:Statement ;
up:attribution _:840995 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:841076 a rdf:Statement ;
up:attribution _:840996 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:841077 a rdf:Statement ;
up:attribution _:840997 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:57 .
_:841078 a rdf:Statement ;
up:attribution _:840998 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:841079 a rdf:Statement ;
up:attribution _:840999 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:841080 a rdf:Statement ;
up:attribution _:841000 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:841081 a rdf:Statement ;
up:attribution _:841001 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:841082 a rdf:Statement ;
up:attribution _:841002 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:841083 a rdf:Statement ;
up:attribution _:841003 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:841084 a rdf:Statement ;
up:attribution _:841004 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:841085 a rdf:Statement ;
up:attribution _:841005 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:841086 a rdf:Statement ;
up:attribution _:841006 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:841087 a rdf:Statement ;
up:attribution _:841007 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:841088 a rdf:Statement ;
up:attribution _:841008 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:841089 a rdf:Statement ;
up:attribution _:841009 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:841090 a rdf:Statement ;
up:attribution _:841010 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003855 .
_:841091 a rdf:Statement ;
up:attribution _:841011 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003856 .
_:841092 a rdf:Statement ;
up:attribution _:841012 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003866 .
_:841093 a rdf:Statement ;
up:attribution _:841013 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:841094 a rdf:Statement ;
up:attribution _:841014 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:841095 a rdf:Statement ;
up:attribution _:841015 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004764 .
_:841096 a rdf:Statement ;
up:attribution _:841016 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004765 .
_:841097 a rdf:Statement ;
up:attribution _:841017 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009073 .
_:841098 a rdf:Statement ;
up:attribution _:841018 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009423 .
_:841099 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:841100 a rdf:Statement ;
up:attribution _:841019 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:841101 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:841102 a rdf:Statement ;
up:attribution _:841020 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:841103 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:841104 a rdf:Statement ;
up:attribution _:841021 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:841105 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:841106 a rdf:Statement ;
up:attribution _:841022 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:841107 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:841108 a rdf:Statement ;
up:attribution _:841023 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:841109 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:841110 a rdf:Statement ;
up:attribution _:841024 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:841111 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:841112 a rdf:Statement ;
up:attribution _:841025 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:841113 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:841114 a rdf:Statement ;
up:attribution _:841026 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:841115 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:841116 a rdf:Statement ;
up:attribution _:841027 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:841117 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:841118 a rdf:Statement ;
up:attribution _:841028 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:841119 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:841120 a rdf:Statement ;
up:attribution _:841029 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:841121 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:841122 a rdf:Statement ;
up:attribution _:841030 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:841123 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:841124 a rdf:Statement ;
up:attribution _:841031 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:841125 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:841126 a rdf:Statement ;
up:attribution _:841032 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:841127 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs127 ;
rdf:predicate up:annotation ;
rdf:object ?annotation128 .
_:841128 a rdf:Statement ;
up:attribution _:841033 ;
rdf:subject ?pfs127 ;
rdf:predicate up:annotation ;
rdf:object ?annotation128 .
_:841129 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
_:841130 a rdf:Statement ;
up:attribution _:841034 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
_:841131 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs139 ;
rdf:predicate up:annotation ;
rdf:object ?annotation140 .
_:841132 a rdf:Statement ;
up:attribution _:841035 ;
rdf:subject ?pfs139 ;
rdf:predicate up:annotation ;
rdf:object ?annotation140 .
_:841133 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
_:841134 a rdf:Statement ;
up:attribution _:841036 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
_:841135 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs151 ;
rdf:predicate up:annotation ;
rdf:object ?annotation152 .
_:841136 a rdf:Statement ;
up:attribution _:841037 ;
rdf:subject ?pfs151 ;
rdf:predicate up:annotation ;
rdf:object ?annotation152 .
_:841137 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs158 ;
rdf:predicate up:annotation ;
rdf:object ?annotation159 .
_:841138 a rdf:Statement ;
up:attribution _:841038 ;
rdf:subject ?pfs158 ;
rdf:predicate up:annotation ;
rdf:object ?annotation159 .
_:841139 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs165 ;
rdf:predicate up:annotation ;
rdf:object ?annotation166 .
_:841140 a rdf:Statement ;
up:attribution _:841039 ;
rdf:subject ?pfs165 ;
rdf:predicate up:annotation ;
rdf:object ?annotation166 .
_:841141 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs172 ;
rdf:predicate up:annotation ;
rdf:object ?annotation173 .
_:841142 a rdf:Statement ;
up:attribution _:841040 ;
rdf:subject ?pfs172 ;
rdf:predicate up:annotation ;
rdf:object ?annotation173 .
_:841143 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs179 ;
rdf:predicate up:annotation ;
rdf:object ?annotation180 .
_:841144 a rdf:Statement ;
up:attribution _:841041 ;
rdf:subject ?pfs179 ;
rdf:predicate up:annotation ;
rdf:object ?annotation180 .
_:841145 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs186 ;
rdf:predicate up:annotation ;
rdf:object ?annotation187 .
_:841146 a rdf:Statement ;
up:attribution _:841042 ;
rdf:subject ?pfs186 ;
rdf:predicate up:annotation ;
rdf:object ?annotation187 .
_:841147 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs193 ;
rdf:predicate up:annotation ;
rdf:object ?annotation194 .
_:841148 a rdf:Statement ;
up:attribution _:841043 ;
rdf:subject ?pfs193 ;
rdf:predicate up:annotation ;
rdf:object ?annotation194 .
_:841149 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs200 ;
rdf:predicate up:annotation ;
rdf:object ?annotation201 .
_:841150 a rdf:Statement ;
up:attribution _:841044 ;
rdf:subject ?pfs200 ;
rdf:predicate up:annotation ;
rdf:object ?annotation201 .
_:841151 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs207 ;
rdf:predicate up:annotation ;
rdf:object ?annotation208 .
_:841152 a rdf:Statement ;
up:attribution _:841045 ;
rdf:subject ?pfs207 ;
rdf:predicate up:annotation ;
rdf:object ?annotation208 .
_:841153 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs214 ;
rdf:predicate up:annotation ;
rdf:object ?annotation215 .
_:841154 a rdf:Statement ;
up:attribution _:841046 ;
rdf:subject ?pfs214 ;
rdf:predicate up:annotation ;
rdf:object ?annotation215 .
_:841155 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs221 ;
rdf:predicate up:annotation ;
rdf:object ?annotation222 .
_:841156 a rdf:Statement ;
up:attribution _:841047 ;
rdf:subject ?pfs221 ;
rdf:predicate up:annotation ;
rdf:object ?annotation222 .
_:841157 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs228 ;
rdf:predicate up:annotation ;
rdf:object ?annotation229 .
_:841158 a rdf:Statement ;
up:attribution _:841048 ;
rdf:subject ?pfs228 ;
rdf:predicate up:annotation ;
rdf:object ?annotation229 .
_:841159 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs235 ;
rdf:predicate up:annotation ;
rdf:object ?annotation236 .
_:841160 a rdf:Statement ;
up:attribution _:841049 ;
rdf:subject ?pfs235 ;
rdf:predicate up:annotation ;
rdf:object ?annotation236 .
_:841161 a rdf:Statement ;
up:source unirule:MF_03143 ;
rdf:subject ?pfs242 ;
rdf:predicate up:annotation ;
rdf:object ?annotation243 .
_:841162 a rdf:Statement ;
up:attribution _:841050 ;
rdf:subject ?pfs242 ;
rdf:predicate up:annotation ;
rdf:object ?annotation243 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03143
#Rule MF_03143 Created by:? on:2012-11-01 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03143 .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(URI(CONCAT(STR(?this), '#MF_03143a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a3')) AS ?namedpart3) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a4')) AS ?namedpart4) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a5')) AS ?namedpart5) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a15')) AS ?annotation15) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a17')) AS ?annotation17) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a18')) AS ?annotation18) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a19')) AS ?annotation19) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a20')) AS ?annotation20) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a21')) AS ?annotation21) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a22')) AS ?annotation22) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a23')) AS ?annotation23) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a24')) AS ?annotation24) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a26')) AS ?annotation26) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a27')) AS ?annotation27) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a28')) AS ?annotation28) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a29')) AS ?annotation29) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a30')) AS ?annotation30) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionP07547254 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547256 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143249 .
?templateMotifSequenceMatchRegionP07547254 faldo:begin ?templateMotifSequenceMatchBeginP07547255 .
?templateMotifSequenceMatchBeginP07547255 faldo:position ?templateMotifSequenceMatchBeginPositionP07547250 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547256 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143260 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143251 .
?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143259 .
?targetMotifMatchRegionMatchBeginMF_03143259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143252 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143260 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143249, 1, (STRLEN(?templateMotifCigarP07547MF_03143249) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143249, CONCAT('^(?:-*[^-]){', STR(((384 - ?templateMotifSequenceMatchBeginPositionP07547250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143251, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143251) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143251, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143251) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) .
BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_03143252) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((BOUND(?thisPositionOn39) && BOUND(?thisPositionOn40))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionP07547269 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547271 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143264 .
?templateMotifSequenceMatchRegionP07547269 faldo:begin ?templateMotifSequenceMatchBeginP07547270 .
?templateMotifSequenceMatchBeginP07547270 faldo:position ?templateMotifSequenceMatchBeginPositionP07547265 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547271 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143275 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143266 .
?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143274 .
?targetMotifMatchRegionMatchBeginMF_03143274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143267 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143275 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143264, 1, (STRLEN(?templateMotifCigarP07547MF_03143264) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143264, CONCAT('^(?:-*[^-]){', STR(((397 - ?templateMotifSequenceMatchBeginPositionP07547265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143266, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143266) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143266, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143266) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) .
BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_03143267) - 1) AS ?thisPositionOn45) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143264, 1, (STRLEN(?templateMotifCigarP07547MF_03143264) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143264, CONCAT('^(?:-*[^-]){', STR(((842 - ?templateMotifSequenceMatchBeginPositionP07547265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143266, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143266) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143266, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143266) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) .
BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_03143267) - 1) AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t280) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((BOUND(?thisPositionOn45) && BOUND(?thisPositionOn46))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch285 faldo:location ?templateMotifSequenceMatchRegionP07547286 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547288 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143281 .
?templateMotifSequenceMatchRegionP07547286 faldo:begin ?templateMotifSequenceMatchBeginP07547287 .
?templateMotifSequenceMatchBeginP07547287 faldo:position ?templateMotifSequenceMatchBeginPositionP07547282 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547288 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch289 faldo:location ?targetMotifMatchRegionMatch290 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143292 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143283 .
?targetMotifMatchRegionMatch290 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143291 .
?targetMotifMatchRegionMatchBeginMF_03143291 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143284 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143292 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143281, 1, (STRLEN(?templateMotifCigarP07547MF_03143281) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143281, CONCAT('^(?:-*[^-]){', STR(((863 - ?templateMotifSequenceMatchBeginPositionP07547282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1293) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143283, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143283) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143283, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143283) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), '')))), '[^-]', ''))) AS ?step2294) .
BIND(((?step2294 + ?targetMotifMatchRegionMatchBeginPositionMF_03143284) - 1) AS ?thisPositionOn51) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143281, 1, (STRLEN(?templateMotifCigarP07547MF_03143281) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143281, CONCAT('^(?:-*[^-]){', STR(((1055 - ?templateMotifSequenceMatchBeginPositionP07547282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143283, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143283) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143283, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143283) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) .
BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_03143284) - 1) AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t297) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) .
FILTER ((BOUND(?thisPositionOn51) && BOUND(?thisPositionOn52))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionP07547303 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547305 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143298 .
?templateMotifSequenceMatchRegionP07547303 faldo:begin ?templateMotifSequenceMatchBeginP07547304 .
?templateMotifSequenceMatchBeginP07547304 faldo:position ?templateMotifSequenceMatchBeginPositionP07547299 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547305 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143309 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143300 .
?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143308 .
?targetMotifMatchRegionMatchBeginMF_03143308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143301 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143309 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143298, 1, (STRLEN(?templateMotifCigarP07547MF_03143298) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143298, CONCAT('^(?:-*[^-]){', STR(((1056 - ?templateMotifSequenceMatchBeginPositionP07547299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143300, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143300) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143300, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143300) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) .
BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_03143301) - 1) AS ?thisPositionOn57) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143298, 1, (STRLEN(?templateMotifCigarP07547MF_03143298) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143298, CONCAT('^(?:-*[^-]){', STR(((1276 - ?templateMotifSequenceMatchBeginPositionP07547299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143300, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143300) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143300, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143300) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) .
BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_03143301) - 1) AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t314) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) .
FILTER ((BOUND(?thisPositionOn57) && BOUND(?thisPositionOn58))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP07547320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143315 .
?templateMotifSequenceMatchRegionP07547320 faldo:begin ?templateMotifSequenceMatchBeginP07547321 .
?templateMotifSequenceMatchBeginP07547321 faldo:position ?templateMotifSequenceMatchBeginPositionP07547316 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547322 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143317 .
?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143325 .
?targetMotifMatchRegionMatchBeginMF_03143325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143326 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143315, 1, (STRLEN(?templateMotifCigarP07547MF_03143315) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143315, CONCAT('^(?:-*[^-]){', STR(((1289 - ?templateMotifSequenceMatchBeginPositionP07547316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143317, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143317) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143317, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143317) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_03143318) - 1) AS ?thisPositionOn63) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse62) .
FILTER ((BOUND(?thisPositionOn63) && BOUND(?thisPositionOn64))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP07547335 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547337 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143330 .
?templateMotifSequenceMatchRegionP07547335 faldo:begin ?templateMotifSequenceMatchBeginP07547336 .
?templateMotifSequenceMatchBeginP07547336 faldo:position ?templateMotifSequenceMatchBeginPositionP07547331 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547337 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143341 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143332 .
?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143340 .
?targetMotifMatchRegionMatchBeginMF_03143340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143333 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143341 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143330, 1, (STRLEN(?templateMotifCigarP07547MF_03143330) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143330, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP07547331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143332, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143332) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143332, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143332) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) .
BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_03143333) - 1) AS ?thisPositionOn70) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143330, 1, (STRLEN(?templateMotifCigarP07547MF_03143330) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143330, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP07547331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143332, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143332) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143332, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143332) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) .
BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_03143333) - 1) AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t346) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER (REGEX('D[TSDQ][NRT]', SUBSTR(?thisSequenceValue, ?thisPositionOn70, (?thisPositionOn71 - ?thisPositionOn70)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionP07547352 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547354 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143347 .
?templateMotifSequenceMatchRegionP07547352 faldo:begin ?templateMotifSequenceMatchBeginP07547353 .
?templateMotifSequenceMatchBeginP07547353 faldo:position ?templateMotifSequenceMatchBeginPositionP07547348 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547354 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143358 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143349 .
?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143357 .
?targetMotifMatchRegionMatchBeginMF_03143357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143350 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143358 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143347, 1, (STRLEN(?templateMotifCigarP07547MF_03143347) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143347, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionP07547348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143349, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143349) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143349, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143349) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) .
BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_03143350) - 1) AS ?thisPositionOn77) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143347, 1, (STRLEN(?templateMotifCigarP07547MF_03143347) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143347, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP07547348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143349, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143349) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143349, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143349) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) .
BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_03143350) - 1) AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t363) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER (REGEX('E[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)K', SUBSTR(?thisSequenceValue, ?thisPositionOn77, (?thisPositionOn78 - ?thisPositionOn77)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch368 faldo:location ?templateMotifSequenceMatchRegionP07547369 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547371 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143364 .
?templateMotifSequenceMatchRegionP07547369 faldo:begin ?templateMotifSequenceMatchBeginP07547370 .
?templateMotifSequenceMatchBeginP07547370 faldo:position ?templateMotifSequenceMatchBeginPositionP07547365 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547371 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch372 faldo:location ?targetMotifMatchRegionMatch373 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143375 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143366 .
?targetMotifMatchRegionMatch373 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143374 .
?targetMotifMatchRegionMatchBeginMF_03143374 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143367 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143375 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143364, 1, (STRLEN(?templateMotifCigarP07547MF_03143364) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143364, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP07547365) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1376) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143366, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143366) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143366, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143366) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), '')))), '[^-]', ''))) AS ?step2377) .
BIND(((?step2377 + ?targetMotifMatchRegionMatchBeginPositionMF_03143367) - 1) AS ?thisPositionOn84) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143364, 1, (STRLEN(?templateMotifCigarP07547MF_03143364) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143364, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP07547365) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1378) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143366, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143366) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143366, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143366) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), '')))), '[^-]', ''))) AS ?step2379) .
BIND(((?step2379 + ?targetMotifMatchRegionMatchBeginPositionMF_03143367) - 1) AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t380) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER (REGEX('GG[VI]', SUBSTR(?thisSequenceValue, ?thisPositionOn84, (?thisPositionOn85 - ?thisPositionOn84)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch385 faldo:location ?templateMotifSequenceMatchRegionP07547386 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547388 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143381 .
?templateMotifSequenceMatchRegionP07547386 faldo:begin ?templateMotifSequenceMatchBeginP07547387 .
?templateMotifSequenceMatchBeginP07547387 faldo:position ?templateMotifSequenceMatchBeginPositionP07547382 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547388 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch389 faldo:location ?targetMotifMatchRegionMatch390 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143392 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143383 .
?targetMotifMatchRegionMatch390 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143391 .
?targetMotifMatchRegionMatchBeginMF_03143391 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143384 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143392 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143381, 1, (STRLEN(?templateMotifCigarP07547MF_03143381) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143381, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP07547382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1393) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143383, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143383) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1393), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143383, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143383) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1393), '}'), '')))), '[^-]', ''))) AS ?step2394) .
BIND(((?step2394 + ?targetMotifMatchRegionMatchBeginPositionMF_03143384) - 1) AS ?thisPositionOn91) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143381, 1, (STRLEN(?templateMotifCigarP07547MF_03143381) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143381, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP07547382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1395) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143383, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143383) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143383, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143383) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), '')))), '[^-]', ''))) AS ?step2396) .
BIND(((?step2396 + ?targetMotifMatchRegionMatchBeginPositionMF_03143384) - 1) AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t397) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER (REGEX('T[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn91, (?thisPositionOn92 - ?thisPositionOn91)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch402 faldo:location ?templateMotifSequenceMatchRegionP07547403 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547405 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143398 .
?templateMotifSequenceMatchRegionP07547403 faldo:begin ?templateMotifSequenceMatchBeginP07547404 .
?templateMotifSequenceMatchBeginP07547404 faldo:position ?templateMotifSequenceMatchBeginPositionP07547399 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547405 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch406 faldo:location ?targetMotifMatchRegionMatch407 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143409 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143400 .
?targetMotifMatchRegionMatch407 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143408 .
?targetMotifMatchRegionMatchBeginMF_03143408 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143401 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143409 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143398, 1, (STRLEN(?templateMotifCigarP07547MF_03143398) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143398, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP07547399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1410) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143400, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143400) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1410), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143400, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143400) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1410), '}'), '')))), '[^-]', ''))) AS ?step2411) .
BIND(((?step2411 + ?targetMotifMatchRegionMatchBeginPositionMF_03143401) - 1) AS ?thisPositionOn98) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143398, 1, (STRLEN(?templateMotifCigarP07547MF_03143398) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143398, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionP07547399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1412) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143400, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143400) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143400, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143400) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), '')))), '[^-]', ''))) AS ?step2413) .
BIND(((?step2413 + ?targetMotifMatchRegionMatchBeginPositionMF_03143401) - 1) AS ?thisPositionOn99) .
BIND(?this AS ?pfs1t414) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER (REGEX('[FYW][LI][ARNDCQEGHILKMFPSTWYVBZJUOX][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn98, (?thisPositionOn99 - ?thisPositionOn98)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch419 faldo:location ?templateMotifSequenceMatchRegionP07547420 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547422 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143415 .
?templateMotifSequenceMatchRegionP07547420 faldo:begin ?templateMotifSequenceMatchBeginP07547421 .
?templateMotifSequenceMatchBeginP07547421 faldo:position ?templateMotifSequenceMatchBeginPositionP07547416 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547422 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch423 faldo:location ?targetMotifMatchRegionMatch424 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143426 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143417 .
?targetMotifMatchRegionMatch424 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143425 .
?targetMotifMatchRegionMatchBeginMF_03143425 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143418 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143426 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143415, 1, (STRLEN(?templateMotifCigarP07547MF_03143415) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143415, CONCAT('^(?:-*[^-]){', STR(((870 - ?templateMotifSequenceMatchBeginPositionP07547416) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1427) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143417, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143417) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143417, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1427), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143417, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143417) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143417, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1427), '}'), '')))), '[^-]', ''))) AS ?step2428) .
BIND(((?step2428 + ?targetMotifMatchRegionMatchBeginPositionMF_03143418) - 1) AS ?thisPositionOn105) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143415, 1, (STRLEN(?templateMotifCigarP07547MF_03143415) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143415, CONCAT('^(?:-*[^-]){', STR(((877 - ?templateMotifSequenceMatchBeginPositionP07547416) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1429) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143417, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143417) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143417, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143417, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143417) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143417, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), '')))), '[^-]', ''))) AS ?step2430) .
BIND(((?step2430 + ?targetMotifMatchRegionMatchBeginPositionMF_03143418) - 1) AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t431) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER (REGEX('GMR[GA][AST]GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn105, (?thisPositionOn106 - ?thisPositionOn105)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch436 faldo:location ?templateMotifSequenceMatchRegionP07547437 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547439 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143432 .
?templateMotifSequenceMatchRegionP07547437 faldo:begin ?templateMotifSequenceMatchBeginP07547438 .
?templateMotifSequenceMatchBeginP07547438 faldo:position ?templateMotifSequenceMatchBeginPositionP07547433 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547439 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch440 faldo:location ?targetMotifMatchRegionMatch441 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143443 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143434 .
?targetMotifMatchRegionMatch441 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143442 .
?targetMotifMatchRegionMatchBeginMF_03143442 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143435 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143443 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143432, 1, (STRLEN(?templateMotifCigarP07547MF_03143432) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143432, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionP07547433) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1444) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143434, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143434) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1444), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143434, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143434) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1444), '}'), '')))), '[^-]', ''))) AS ?step2445) .
BIND(((?step2445 + ?targetMotifMatchRegionMatchBeginPositionMF_03143435) - 1) AS ?thisPositionOn112) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143432, 1, (STRLEN(?templateMotifCigarP07547MF_03143432) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143432, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP07547433) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1446) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143434, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143434) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1446), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143434, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143434) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1446), '}'), '')))), '[^-]', ''))) AS ?step2447) .
BIND(((?step2447 + ?targetMotifMatchRegionMatchBeginPositionMF_03143435) - 1) AS ?thisPositionOn113) .
BIND(?this AS ?pfs1t448) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER (REGEX('E[VIL][IV]K', SUBSTR(?thisSequenceValue, ?thisPositionOn112, (?thisPositionOn113 - ?thisPositionOn112)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch453 faldo:location ?templateMotifSequenceMatchRegionP07547454 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547456 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143449 .
?templateMotifSequenceMatchRegionP07547454 faldo:begin ?templateMotifSequenceMatchBeginP07547455 .
?templateMotifSequenceMatchBeginP07547455 faldo:position ?templateMotifSequenceMatchBeginPositionP07547450 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547456 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch457 faldo:location ?targetMotifMatchRegionMatch458 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143460 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143451 .
?targetMotifMatchRegionMatch458 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143459 .
?targetMotifMatchRegionMatchBeginMF_03143459 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143452 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143460 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143449, 1, (STRLEN(?templateMotifCigarP07547MF_03143449) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143449, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP07547450) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1461) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143451, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143451) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143451, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1461), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143451, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143451) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143451, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1461), '}'), '')))), '[^-]', ''))) AS ?step2462) .
BIND(((?step2462 + ?targetMotifMatchRegionMatchBeginPositionMF_03143452) - 1) AS ?thisPositionOn119) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143449, 1, (STRLEN(?templateMotifCigarP07547MF_03143449) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143449, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP07547450) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1463) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143451, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143451) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143451, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1463), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143451, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143451) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143451, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1463), '}'), '')))), '[^-]', ''))) AS ?step2464) .
BIND(((?step2464 + ?targetMotifMatchRegionMatchBeginPositionMF_03143452) - 1) AS ?thisPositionOn120) .
BIND(?this AS ?pfs1t465) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) .
FILTER (REGEX('R[NT][LI][LV]N', SUBSTR(?thisSequenceValue, ?thisPositionOn119, (?thisPositionOn120 - ?thisPositionOn119)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch470 faldo:location ?templateMotifSequenceMatchRegionP07547471 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547473 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143466 .
?templateMotifSequenceMatchRegionP07547471 faldo:begin ?templateMotifSequenceMatchBeginP07547472 .
?templateMotifSequenceMatchBeginP07547472 faldo:position ?templateMotifSequenceMatchBeginPositionP07547467 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547473 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch474 faldo:location ?targetMotifMatchRegionMatch475 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143477 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143468 .
?targetMotifMatchRegionMatch475 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143476 .
?targetMotifMatchRegionMatchBeginMF_03143476 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143469 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143477 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143466, 1, (STRLEN(?templateMotifCigarP07547MF_03143466) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143466, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionP07547467) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1478) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143468, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143468) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143468, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1478), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143468, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143468) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143468, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1478), '}'), '')))), '[^-]', ''))) AS ?step2479) .
BIND(((?step2479 + ?targetMotifMatchRegionMatchBeginPositionMF_03143469) - 1) AS ?thisPositionOn125) .
BIND(?thisPositionOn125 AS ?thisPositionOn126) .
BIND(?this AS ?pfs1t480) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfse124) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn125, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch485 faldo:location ?templateMotifSequenceMatchRegionP07547486 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547488 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143481 .
?templateMotifSequenceMatchRegionP07547486 faldo:begin ?templateMotifSequenceMatchBeginP07547487 .
?templateMotifSequenceMatchBeginP07547487 faldo:position ?templateMotifSequenceMatchBeginPositionP07547482 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547488 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch489 faldo:location ?targetMotifMatchRegionMatch490 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143492 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143483 .
?targetMotifMatchRegionMatch490 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143491 .
?targetMotifMatchRegionMatchBeginMF_03143491 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143484 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143492 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143481, 1, (STRLEN(?templateMotifCigarP07547MF_03143481) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143481, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP07547482) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1493) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143483, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143483) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143483, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1493), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143483, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143483) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143483, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1493), '}'), '')))), '[^-]', ''))) AS ?step2494) .
BIND(((?step2494 + ?targetMotifMatchRegionMatchBeginPositionMF_03143484) - 1) AS ?thisPositionOn131) .
BIND(?thisPositionOn131 AS ?thisPositionOn132) .
BIND(?this AS ?pfs1t495) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse130) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a128')) AS ?annotation128) .
BIND(?this AS ?pfs127) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch500 faldo:location ?templateMotifSequenceMatchRegionP07547501 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547503 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143496 .
?templateMotifSequenceMatchRegionP07547501 faldo:begin ?templateMotifSequenceMatchBeginP07547502 .
?templateMotifSequenceMatchBeginP07547502 faldo:position ?templateMotifSequenceMatchBeginPositionP07547497 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547503 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch504 faldo:location ?targetMotifMatchRegionMatch505 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143507 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143498 .
?targetMotifMatchRegionMatch505 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143506 .
?targetMotifMatchRegionMatchBeginMF_03143506 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143499 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143507 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143496, 1, (STRLEN(?templateMotifCigarP07547MF_03143496) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143496, CONCAT('^(?:-*[^-]){', STR(((824 - ?templateMotifSequenceMatchBeginPositionP07547497) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1508) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143498, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143498) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143498, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1508), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143498, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143498) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143498, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1508), '}'), '')))), '[^-]', ''))) AS ?step2509) .
BIND(((?step2509 + ?targetMotifMatchRegionMatchBeginPositionMF_03143499) - 1) AS ?thisPositionOn137) .
BIND(?thisPositionOn137 AS ?thisPositionOn138) .
BIND(?this AS ?pfs1t510) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfsb135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfse136) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn137, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a134')) AS ?annotation134) .
BIND(?this AS ?pfs133) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch515 faldo:location ?templateMotifSequenceMatchRegionP07547516 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547518 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143511 .
?templateMotifSequenceMatchRegionP07547516 faldo:begin ?templateMotifSequenceMatchBeginP07547517 .
?templateMotifSequenceMatchBeginP07547517 faldo:position ?templateMotifSequenceMatchBeginPositionP07547512 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547518 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch519 faldo:location ?targetMotifMatchRegionMatch520 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143522 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143513 .
?targetMotifMatchRegionMatch520 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143521 .
?targetMotifMatchRegionMatchBeginMF_03143521 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143514 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143522 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143511, 1, (STRLEN(?templateMotifCigarP07547MF_03143511) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143511, CONCAT('^(?:-*[^-]){', STR(((1179 - ?templateMotifSequenceMatchBeginPositionP07547512) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1523) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143513, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143513) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143513, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1523), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143513, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143513) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143513, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1523), '}'), '')))), '[^-]', ''))) AS ?step2524) .
BIND(((?step2524 + ?targetMotifMatchRegionMatchBeginPositionMF_03143514) - 1) AS ?thisPositionOn143) .
BIND(?thisPositionOn143 AS ?thisPositionOn144) .
BIND(?this AS ?pfs1t525) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfsb141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfse142) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn143, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a140')) AS ?annotation140) .
BIND(?this AS ?pfs139) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch530 faldo:location ?templateMotifSequenceMatchRegionP07547531 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547533 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143526 .
?templateMotifSequenceMatchRegionP07547531 faldo:begin ?templateMotifSequenceMatchBeginP07547532 .
?templateMotifSequenceMatchBeginP07547532 faldo:position ?templateMotifSequenceMatchBeginPositionP07547527 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547533 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch534 faldo:location ?targetMotifMatchRegionMatch535 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143537 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143528 .
?targetMotifMatchRegionMatch535 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143536 .
?targetMotifMatchRegionMatchBeginMF_03143536 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143529 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143537 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143526, 1, (STRLEN(?templateMotifCigarP07547MF_03143526) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143526, CONCAT('^(?:-*[^-]){', STR(((1207 - ?templateMotifSequenceMatchBeginPositionP07547527) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1538) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143528, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143528) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143528, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1538), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143528, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143528) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143528, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1538), '}'), '')))), '[^-]', ''))) AS ?step2539) .
BIND(((?step2539 + ?targetMotifMatchRegionMatchBeginPositionMF_03143529) - 1) AS ?thisPositionOn149) .
BIND(?thisPositionOn149 AS ?thisPositionOn150) .
BIND(?this AS ?pfs1t540) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn149))) AS ?pfsb147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn150))) AS ?pfse148) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn149, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a146')) AS ?annotation146) .
BIND(?this AS ?pfs145) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch545 faldo:location ?templateMotifSequenceMatchRegionP07547546 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547548 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143541 .
?templateMotifSequenceMatchRegionP07547546 faldo:begin ?templateMotifSequenceMatchBeginP07547547 .
?templateMotifSequenceMatchBeginP07547547 faldo:position ?templateMotifSequenceMatchBeginPositionP07547542 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547548 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch549 faldo:location ?targetMotifMatchRegionMatch550 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143552 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143543 .
?targetMotifMatchRegionMatch550 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143551 .
?targetMotifMatchRegionMatchBeginMF_03143551 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143544 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143552 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143541, 1, (STRLEN(?templateMotifCigarP07547MF_03143541) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143541, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionP07547542) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1553) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143543, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143543) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143543, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1553), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143543, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143543) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143543, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1553), '}'), '')))), '[^-]', ''))) AS ?step2554) .
BIND(((?step2554 + ?targetMotifMatchRegionMatchBeginPositionMF_03143544) - 1) AS ?thisPositionOn156) .
BIND(?thisPositionOn156 AS ?thisPositionOn157) .
BIND(?this AS ?pfs1t555) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn156))) AS ?pfsb153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn157))) AS ?pfse154) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn156, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a152')) AS ?annotation152) .
BIND(?this AS ?pfs151) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch560 faldo:location ?templateMotifSequenceMatchRegionP07547561 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547563 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143556 .
?templateMotifSequenceMatchRegionP07547561 faldo:begin ?templateMotifSequenceMatchBeginP07547562 .
?templateMotifSequenceMatchBeginP07547562 faldo:position ?templateMotifSequenceMatchBeginPositionP07547557 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547563 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch564 faldo:location ?targetMotifMatchRegionMatch565 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143567 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143558 .
?targetMotifMatchRegionMatch565 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143566 .
?targetMotifMatchRegionMatchBeginMF_03143566 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143559 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143567 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143556, 1, (STRLEN(?templateMotifCigarP07547MF_03143556) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143556, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionP07547557) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1568) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143558, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143558) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143558, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1568), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143558, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143558) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143558, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1568), '}'), '')))), '[^-]', ''))) AS ?step2569) .
BIND(((?step2569 + ?targetMotifMatchRegionMatchBeginPositionMF_03143559) - 1) AS ?thisPositionOn163) .
BIND(?thisPositionOn163 AS ?thisPositionOn164) .
BIND(?this AS ?pfs1t570) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn163))) AS ?pfsb160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn164))) AS ?pfse161) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn163, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a159')) AS ?annotation159) .
BIND(?this AS ?pfs158) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch575 faldo:location ?templateMotifSequenceMatchRegionP07547576 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547578 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143571 .
?templateMotifSequenceMatchRegionP07547576 faldo:begin ?templateMotifSequenceMatchBeginP07547577 .
?templateMotifSequenceMatchBeginP07547577 faldo:position ?templateMotifSequenceMatchBeginPositionP07547572 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547578 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch579 faldo:location ?targetMotifMatchRegionMatch580 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143582 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143573 .
?targetMotifMatchRegionMatch580 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143581 .
?targetMotifMatchRegionMatchBeginMF_03143581 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143574 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143582 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143571, 1, (STRLEN(?templateMotifCigarP07547MF_03143571) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143571, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionP07547572) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1583) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143573, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143573) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143573, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1583), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143573, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143573) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143573, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1583), '}'), '')))), '[^-]', ''))) AS ?step2584) .
BIND(((?step2584 + ?targetMotifMatchRegionMatchBeginPositionMF_03143574) - 1) AS ?thisPositionOn170) .
BIND(?thisPositionOn170 AS ?thisPositionOn171) .
BIND(?this AS ?pfs1t585) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn170))) AS ?pfsb167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn171))) AS ?pfse168) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn170, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a166')) AS ?annotation166) .
BIND(?this AS ?pfs165) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch590 faldo:location ?templateMotifSequenceMatchRegionP07547591 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547593 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143586 .
?templateMotifSequenceMatchRegionP07547591 faldo:begin ?templateMotifSequenceMatchBeginP07547592 .
?templateMotifSequenceMatchBeginP07547592 faldo:position ?templateMotifSequenceMatchBeginPositionP07547587 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547593 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch594 faldo:location ?targetMotifMatchRegionMatch595 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143597 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143588 .
?targetMotifMatchRegionMatch595 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143596 .
?targetMotifMatchRegionMatchBeginMF_03143596 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143589 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143597 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143586, 1, (STRLEN(?templateMotifCigarP07547MF_03143586) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143586, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP07547587) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1598) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143588, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143588) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143588, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1598), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143588, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143588) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143588, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1598), '}'), '')))), '[^-]', ''))) AS ?step2599) .
BIND(((?step2599 + ?targetMotifMatchRegionMatchBeginPositionMF_03143589) - 1) AS ?thisPositionOn177) .
BIND(?thisPositionOn177 AS ?thisPositionOn178) .
BIND(?this AS ?pfs1t600) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn177))) AS ?pfsb174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn178))) AS ?pfse175) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn177, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a173')) AS ?annotation173) .
BIND(?this AS ?pfs172) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch605 faldo:location ?templateMotifSequenceMatchRegionP07547606 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547608 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143601 .
?templateMotifSequenceMatchRegionP07547606 faldo:begin ?templateMotifSequenceMatchBeginP07547607 .
?templateMotifSequenceMatchBeginP07547607 faldo:position ?templateMotifSequenceMatchBeginPositionP07547602 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547608 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch609 faldo:location ?targetMotifMatchRegionMatch610 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143612 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143603 .
?targetMotifMatchRegionMatch610 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143611 .
?targetMotifMatchRegionMatchBeginMF_03143611 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143604 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143612 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143601, 1, (STRLEN(?templateMotifCigarP07547MF_03143601) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143601, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP07547602) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1613) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143603, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143603) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143603, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1613), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143603, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143603) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143603, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1613), '}'), '')))), '[^-]', ''))) AS ?step2614) .
BIND(((?step2614 + ?targetMotifMatchRegionMatchBeginPositionMF_03143604) - 1) AS ?thisPositionOn184) .
BIND(?thisPositionOn184 AS ?thisPositionOn185) .
BIND(?this AS ?pfs1t615) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn184))) AS ?pfsb181) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn185))) AS ?pfse182) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn184, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a180')) AS ?annotation180) .
BIND(?this AS ?pfs179) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch620 faldo:location ?templateMotifSequenceMatchRegionP07547621 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547623 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143616 .
?templateMotifSequenceMatchRegionP07547621 faldo:begin ?templateMotifSequenceMatchBeginP07547622 .
?templateMotifSequenceMatchBeginP07547622 faldo:position ?templateMotifSequenceMatchBeginPositionP07547617 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547623 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch624 faldo:location ?targetMotifMatchRegionMatch625 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143627 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143618 .
?targetMotifMatchRegionMatch625 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143626 .
?targetMotifMatchRegionMatchBeginMF_03143626 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143619 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143627 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143616, 1, (STRLEN(?templateMotifCigarP07547MF_03143616) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143616, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionP07547617) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1628) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143618, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143618) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143618, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1628), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143618, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143618) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143618, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1628), '}'), '')))), '[^-]', ''))) AS ?step2629) .
BIND(((?step2629 + ?targetMotifMatchRegionMatchBeginPositionMF_03143619) - 1) AS ?thisPositionOn191) .
BIND(?thisPositionOn191 AS ?thisPositionOn192) .
BIND(?this AS ?pfs1t630) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn191))) AS ?pfsb188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn192))) AS ?pfse189) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn191, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a187')) AS ?annotation187) .
BIND(?this AS ?pfs186) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch635 faldo:location ?templateMotifSequenceMatchRegionP07547636 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547638 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143631 .
?templateMotifSequenceMatchRegionP07547636 faldo:begin ?templateMotifSequenceMatchBeginP07547637 .
?templateMotifSequenceMatchBeginP07547637 faldo:position ?templateMotifSequenceMatchBeginPositionP07547632 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547638 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch639 faldo:location ?targetMotifMatchRegionMatch640 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143642 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143633 .
?targetMotifMatchRegionMatch640 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143641 .
?targetMotifMatchRegionMatchBeginMF_03143641 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143634 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143642 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143631, 1, (STRLEN(?templateMotifCigarP07547MF_03143631) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143631, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP07547632) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1643) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143633, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143633) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143633, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1643), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143633, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143633) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143633, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1643), '}'), '')))), '[^-]', ''))) AS ?step2644) .
BIND(((?step2644 + ?targetMotifMatchRegionMatchBeginPositionMF_03143634) - 1) AS ?thisPositionOn198) .
BIND(?thisPositionOn198 AS ?thisPositionOn199) .
BIND(?this AS ?pfs1t645) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn198))) AS ?pfsb195) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn199))) AS ?pfse196) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn198, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a194')) AS ?annotation194) .
BIND(?this AS ?pfs193) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch650 faldo:location ?templateMotifSequenceMatchRegionP07547651 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547653 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143646 .
?templateMotifSequenceMatchRegionP07547651 faldo:begin ?templateMotifSequenceMatchBeginP07547652 .
?templateMotifSequenceMatchBeginP07547652 faldo:position ?templateMotifSequenceMatchBeginPositionP07547647 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547653 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch654 faldo:location ?targetMotifMatchRegionMatch655 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143657 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143648 .
?targetMotifMatchRegionMatch655 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143656 .
?targetMotifMatchRegionMatchBeginMF_03143656 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143649 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143657 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143646, 1, (STRLEN(?templateMotifCigarP07547MF_03143646) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143646, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP07547647) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1658) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143648, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143648) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143648, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1658), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143648, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143648) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143648, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1658), '}'), '')))), '[^-]', ''))) AS ?step2659) .
BIND(((?step2659 + ?targetMotifMatchRegionMatchBeginPositionMF_03143649) - 1) AS ?thisPositionOn205) .
BIND(?thisPositionOn205 AS ?thisPositionOn206) .
BIND(?this AS ?pfs1t660) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn205))) AS ?pfsb202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn206))) AS ?pfse203) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn205, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a201')) AS ?annotation201) .
BIND(?this AS ?pfs200) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch665 faldo:location ?templateMotifSequenceMatchRegionP07547666 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547668 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143661 .
?templateMotifSequenceMatchRegionP07547666 faldo:begin ?templateMotifSequenceMatchBeginP07547667 .
?templateMotifSequenceMatchBeginP07547667 faldo:position ?templateMotifSequenceMatchBeginPositionP07547662 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547668 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch669 faldo:location ?targetMotifMatchRegionMatch670 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143672 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143663 .
?targetMotifMatchRegionMatch670 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143671 .
?targetMotifMatchRegionMatchBeginMF_03143671 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143664 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143672 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143661, 1, (STRLEN(?templateMotifCigarP07547MF_03143661) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143661, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP07547662) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1673) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143663, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143663) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1673), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143663, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143663) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1673), '}'), '')))), '[^-]', ''))) AS ?step2674) .
BIND(((?step2674 + ?targetMotifMatchRegionMatchBeginPositionMF_03143664) - 1) AS ?thisPositionOn212) .
BIND(?thisPositionOn212 AS ?thisPositionOn213) .
BIND(?this AS ?pfs1t675) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn212))) AS ?pfsb209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn213))) AS ?pfse210) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn212, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a208')) AS ?annotation208) .
BIND(?this AS ?pfs207) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch680 faldo:location ?templateMotifSequenceMatchRegionP07547681 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547683 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143676 .
?templateMotifSequenceMatchRegionP07547681 faldo:begin ?templateMotifSequenceMatchBeginP07547682 .
?templateMotifSequenceMatchBeginP07547682 faldo:position ?templateMotifSequenceMatchBeginPositionP07547677 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547683 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch684 faldo:location ?targetMotifMatchRegionMatch685 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143687 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143678 .
?targetMotifMatchRegionMatch685 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143686 .
?targetMotifMatchRegionMatchBeginMF_03143686 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143679 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143687 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143676, 1, (STRLEN(?templateMotifCigarP07547MF_03143676) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143676, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP07547677) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1688) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143678, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143678) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1688), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143678, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143678) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1688), '}'), '')))), '[^-]', ''))) AS ?step2689) .
BIND(((?step2689 + ?targetMotifMatchRegionMatchBeginPositionMF_03143679) - 1) AS ?thisPositionOn219) .
BIND(?thisPositionOn219 AS ?thisPositionOn220) .
BIND(?this AS ?pfs1t690) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn219))) AS ?pfsb216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn220))) AS ?pfse217) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn219, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a215')) AS ?annotation215) .
BIND(?this AS ?pfs214) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch695 faldo:location ?templateMotifSequenceMatchRegionP07547696 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547698 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143691 .
?templateMotifSequenceMatchRegionP07547696 faldo:begin ?templateMotifSequenceMatchBeginP07547697 .
?templateMotifSequenceMatchBeginP07547697 faldo:position ?templateMotifSequenceMatchBeginPositionP07547692 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547698 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch699 faldo:location ?targetMotifMatchRegionMatch700 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143702 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143693 .
?targetMotifMatchRegionMatch700 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143701 .
?targetMotifMatchRegionMatchBeginMF_03143701 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143694 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143702 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143691, 1, (STRLEN(?templateMotifCigarP07547MF_03143691) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143691, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP07547692) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1703) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143693, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143693) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143693, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1703), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143693, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143693) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143693, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1703), '}'), '')))), '[^-]', ''))) AS ?step2704) .
BIND(((?step2704 + ?targetMotifMatchRegionMatchBeginPositionMF_03143694) - 1) AS ?thisPositionOn226) .
BIND(?thisPositionOn226 AS ?thisPositionOn227) .
BIND(?this AS ?pfs1t705) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn226))) AS ?pfsb223) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn227))) AS ?pfse224) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn226, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a222')) AS ?annotation222) .
BIND(?this AS ?pfs221) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch710 faldo:location ?templateMotifSequenceMatchRegionP07547711 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547713 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143706 .
?templateMotifSequenceMatchRegionP07547711 faldo:begin ?templateMotifSequenceMatchBeginP07547712 .
?templateMotifSequenceMatchBeginP07547712 faldo:position ?templateMotifSequenceMatchBeginPositionP07547707 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547713 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch714 faldo:location ?targetMotifMatchRegionMatch715 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143717 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143708 .
?targetMotifMatchRegionMatch715 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143716 .
?targetMotifMatchRegionMatchBeginMF_03143716 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143709 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143717 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143706, 1, (STRLEN(?templateMotifCigarP07547MF_03143706) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143706, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionP07547707) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1718) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143708, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143708) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143708, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1718), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143708, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143708) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143708, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1718), '}'), '')))), '[^-]', ''))) AS ?step2719) .
BIND(((?step2719 + ?targetMotifMatchRegionMatchBeginPositionMF_03143709) - 1) AS ?thisPositionOn233) .
BIND(?thisPositionOn233 AS ?thisPositionOn234) .
BIND(?this AS ?pfs1t720) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn233))) AS ?pfsb230) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn234))) AS ?pfse231) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn233, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a229')) AS ?annotation229) .
BIND(?this AS ?pfs228) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch725 faldo:location ?templateMotifSequenceMatchRegionP07547726 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547728 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143721 .
?templateMotifSequenceMatchRegionP07547726 faldo:begin ?templateMotifSequenceMatchBeginP07547727 .
?templateMotifSequenceMatchBeginP07547727 faldo:position ?templateMotifSequenceMatchBeginPositionP07547722 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547728 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch729 faldo:location ?targetMotifMatchRegionMatch730 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143732 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143723 .
?targetMotifMatchRegionMatch730 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143731 .
?targetMotifMatchRegionMatchBeginMF_03143731 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143724 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143732 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143721, 1, (STRLEN(?templateMotifCigarP07547MF_03143721) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143721, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionP07547722) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1733) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143723, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143723) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143723, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1733), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143723, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143723) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143723, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1733), '}'), '')))), '[^-]', ''))) AS ?step2734) .
BIND(((?step2734 + ?targetMotifMatchRegionMatchBeginPositionMF_03143724) - 1) AS ?thisPositionOn240) .
BIND(?thisPositionOn240 AS ?thisPositionOn241) .
BIND(?this AS ?pfs1t735) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn240))) AS ?pfsb237) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn241))) AS ?pfse238) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn240, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a236')) AS ?annotation236) .
BIND(?this AS ?pfs235) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch740 faldo:location ?templateMotifSequenceMatchRegionP07547741 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07547743 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07547MF_03143736 .
?templateMotifSequenceMatchRegionP07547741 faldo:begin ?templateMotifSequenceMatchBeginP07547742 .
?templateMotifSequenceMatchBeginP07547742 faldo:position ?templateMotifSequenceMatchBeginPositionP07547737 ;
faldo:reference isoform:P07547-1 .
?templateMotifSequenceProfileAlignmentOperationP07547743 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch744 faldo:location ?targetMotifMatchRegionMatch745 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03143747 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07547MF_03143738 .
?targetMotifMatchRegionMatch745 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03143746 .
?targetMotifMatchRegionMatchBeginMF_03143746 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03143739 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03143747 edam:has_input signature:MF_03143 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07547MF_03143736, 1, (STRLEN(?templateMotifCigarP07547MF_03143736) - STRLEN(REPLACE(?templateMotifCigarP07547MF_03143736, CONCAT('^(?:-*[^-]){', STR(((356 - ?templateMotifSequenceMatchBeginPositionP07547737) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1748) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07547MF_03143738, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143738) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1748), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07547MF_03143738, 1, (STRLEN(?targetMotifMatchCigarP07547MF_03143738) - STRLEN(REPLACE(?targetMotifMatchCigarP07547MF_03143738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1748), '}'), '')))), '[^-]', ''))) AS ?step2749) .
BIND(((?step2749 + ?targetMotifMatchRegionMatchBeginPositionMF_03143739) - 1) AS ?thisPositionOn247) .
BIND(?thisPositionOn247 AS ?thisPositionOn248) .
BIND(?this AS ?pfs1t750) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn247))) AS ?pfsb244) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn248))) AS ?pfse245) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn247, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03143a243')) AS ?annotation243) .
BIND(?this AS ?pfs242) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:5140 .
BIND(?this AS ?case31) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:28568 .
BIND(?this AS ?case32) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4892 .
BIND(?this AS ?case33) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4895 .
BIND(?this AS ?case34) .
}
}
"xsd:string |
