| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-88 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-63 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-38 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-86 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-85 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-13 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-12 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-74 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-92 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-51 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-31 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-77 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-79 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-70 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-73 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-75 |
| http://purl.uniprot.org/unirules/MF_00046#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00046#construct-template-90 |
| http://purl.uniprot.org/unirules/MF_00046#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00046#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00046#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00046#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00046#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00046#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:18640 up:source unirule:MF_00046 .
_:18641 up:source unirule:MF_00046 .
_:18642 up:source unirule:MF_00046 .
_:18643 up:source unirule:MF_00046 .
_:18644 up:source unirule:MF_00046 .
_:18645 up:source unirule:MF_00046 .
_:18646 up:source unirule:MF_00046 .
_:18647 up:source unirule:MF_00046 .
_:18648 up:source unirule:MF_00046 .
_:18649 up:source unirule:MF_00046 .
_:18650 up:source unirule:MF_00046 .
_:18651 up:source unirule:MF_00046 .
_:18652 up:source unirule:MF_00046 .
_:18653 up:source unirule:MF_00046 .
_:18654 up:source unirule:MF_00046 .
_:18655 up:source unirule:MF_00046 .
_:18656 up:source unirule:MF_00046 .
_:18657 up:source unirule:MF_00046 .
_:18658 up:source unirule:MF_00046 .
_:18659 up:source unirule:MF_00046 .
_:18660 up:source unirule:MF_00046 .
_:18661 up:source unirule:MF_00046 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005524 ,
GO:0005737 ,
GO:0008763 ,
GO:0009252 ,
keyword:131 ,
keyword:132 ,
keyword:133 ,
keyword:436 ,
keyword:547 ,
keyword:573 ,
keyword:67 ,
keyword:961 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.2.8' ;
up:fullName 'UDP-N-acetylmuramate--L-alanine ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'UDP-N-acetylmuramoyl-L-alanine synthetase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'murC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Cell wall formation.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Cell wall biogenesis; peptidoglycan biosynthesis.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MurCDEF family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
_:18662 a rdf:Statement ;
up:attribution _:18640 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:18663 a rdf:Statement ;
up:attribution _:18641 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:18664 a rdf:Statement ;
up:attribution _:18642 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:18665 a rdf:Statement ;
up:attribution _:18643 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:18666 a rdf:Statement ;
up:attribution _:18644 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:18667 a rdf:Statement ;
up:attribution _:18645 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:18668 a rdf:Statement ;
up:attribution _:18646 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:18669 a rdf:Statement ;
up:attribution _:18647 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:18670 a rdf:Statement ;
up:attribution _:18648 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:18671 a rdf:Statement ;
up:attribution _:18649 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:18672 a rdf:Statement ;
up:attribution _:18650 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:18673 a rdf:Statement ;
up:attribution _:18651 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:133 .
_:18674 a rdf:Statement ;
up:attribution _:18652 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:961 .
_:18675 a rdf:Statement ;
up:attribution _:18653 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:18676 a rdf:Statement ;
up:attribution _:18654 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:18677 a rdf:Statement ;
up:attribution _:18655 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:18678 a rdf:Statement ;
up:attribution _:18656 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:573 .
_:18679 a rdf:Statement ;
up:attribution _:18657 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:18680 a rdf:Statement ;
up:attribution _:18658 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008763 .
_:18681 a rdf:Statement ;
up:attribution _:18659 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009252 .
_:18682 a rdf:Statement ;
up:attribution _:18660 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:18683 a rdf:Statement ;
up:source unirule:MF_00046 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:18684 a rdf:Statement ;
up:attribution _:18661 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00046
#Rule MF_00046 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00046 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00046a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00046a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00046a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00046a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00046a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00046a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00046a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionP1795222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1795224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17952MF_0004617 .
?templateMotifSequenceMatchRegionP1795222 faldo:begin ?templateMotifSequenceMatchBeginP1795223 .
?templateMotifSequenceMatchBeginP1795223 faldo:position ?templateMotifSequenceMatchBeginPositionP1795218 ;
faldo:reference isoform:P17952-1 .
?templateMotifSequenceProfileAlignmentOperationP1795224 edam:has_input signature:MF_00046 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0004628 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17952MF_0004619 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0004627 .
?targetMotifMatchRegionMatchBeginMF_0004627 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0004620 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0004628 edam:has_input signature:MF_00046 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17952MF_0004617, 1, (STRLEN(?templateMotifCigarP17952MF_0004617) - STRLEN(REPLACE(?templateMotifCigarP17952MF_0004617, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP1795218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17952MF_0004619, 1, (STRLEN(?targetMotifMatchCigarP17952MF_0004619) - STRLEN(REPLACE(?targetMotifMatchCigarP17952MF_0004619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17952MF_0004619, 1, (STRLEN(?targetMotifMatchCigarP17952MF_0004619) - STRLEN(REPLACE(?targetMotifMatchCigarP17952MF_0004619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0004620) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17952MF_0004617, 1, (STRLEN(?templateMotifCigarP17952MF_0004617) - STRLEN(REPLACE(?templateMotifCigarP17952MF_0004617, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP1795218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17952MF_0004619, 1, (STRLEN(?targetMotifMatchCigarP17952MF_0004619) - STRLEN(REPLACE(?targetMotifMatchCigarP17952MF_0004619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17952MF_0004619, 1, (STRLEN(?targetMotifMatchCigarP17952MF_0004619) - STRLEN(REPLACE(?targetMotifMatchCigarP17952MF_0004619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0004620) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)GK[ST][STG]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00046a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00046 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00046#construct |
