| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-79 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-83 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-9 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-17 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-77 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-10 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-76 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-78 |
| http://purl.uniprot.org/unirules/MF_00068#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00068#construct-template-71 |
| http://purl.uniprot.org/unirules/MF_00068#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00068#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00068#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00068#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00068#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00068#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:26692 up:source unirule:MF_00068 .
_:26693 up:source unirule:MF_00068 .
_:26694 up:source unirule:MF_00068 .
_:26695 up:source unirule:MF_00068 .
_:26696 up:source unirule:MF_00068 .
_:26697 up:source unirule:MF_00068 .
_:26698 up:source unirule:MF_00068 .
_:26699 up:source unirule:MF_00068 .
_:26700 up:source unirule:MF_00068 .
_:26701 up:source unirule:MF_00068 .
_:26702 up:source unirule:MF_00068 .
_:26703 up:source unirule:MF_00068 .
_:26704 up:source unirule:MF_00068 .
_:26705 up:source unirule:MF_00068 .
_:26706 up:source unirule:MF_00068 .
_:26707 up:source unirule:MF_00068 .
_:26708 up:source unirule:MF_00068 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0006040 ,
GO:0016835 ,
keyword:119 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.126' ;
up:fullName 'N-acetylmuramic acid 6-phosphate etherase' ;
up:shortName 'MurNAc-6-P etherase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N-acetylmuramic acid 6-phosphate hydrolase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'N-acetylmuramic acid 6-phosphate lyase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'murQ' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-sugar metabolism; N-acetylmuramate degradation.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Annotation ;
rdfs:comment 'A lyase-type mechanism (elimination/hydration) is suggested for the cleavage of the lactyl ether bond of MurNAc 6-phosphate, with the formation of an alpha,beta-unsaturated aldehyde intermediate with (E)-stereochemistry, followed by the syn addition of water to give product.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the GCKR-like family. MurNAc-6-P etherase subfamily.' .
?case10 up:classifiedWith GO:0009254 ,
GO:0097175 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:26709 a rdf:Statement ;
up:attribution _:26692 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:26710 a rdf:Statement ;
up:attribution _:26693 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:26711 a rdf:Statement ;
up:attribution _:26694 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:26712 a rdf:Statement ;
up:attribution _:26695 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:26713 a rdf:Statement ;
up:attribution _:26696 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:26714 a rdf:Statement ;
up:attribution _:26697 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:26715 a rdf:Statement ;
up:attribution _:26698 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:26716 a rdf:Statement ;
up:attribution _:26699 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:26717 a rdf:Statement ;
up:attribution _:26700 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:26718 a rdf:Statement ;
up:attribution _:26701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:26719 a rdf:Statement ;
up:attribution _:26702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:26720 a rdf:Statement ;
up:attribution _:26703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016835 .
_:26721 a rdf:Statement ;
up:attribution _:26704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006040 .
_:26722 a rdf:Statement ;
up:attribution _:26705 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0097175 .
_:26723 a rdf:Statement ;
up:attribution _:26706 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009254 .
_:26724 a rdf:Statement ;
up:source unirule:MF_00068 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:26725 a rdf:Statement ;
up:attribution _:26707 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:26726 a rdf:Statement ;
up:source unirule:MF_00068 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:26727 a rdf:Statement ;
up:attribution _:26708 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00068
#Rule MF_00068 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00068 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00068a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00068a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00068a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00068a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00068a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00068a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00068a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00068a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionP7653530 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7653532 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76535MF_0006825 .
?templateMotifSequenceMatchRegionP7653530 faldo:begin ?templateMotifSequenceMatchBeginP7653531 .
?templateMotifSequenceMatchBeginP7653531 faldo:position ?templateMotifSequenceMatchBeginPositionP7653526 ;
faldo:reference isoform:P76535-1 .
?templateMotifSequenceProfileAlignmentOperationP7653532 edam:has_input signature:MF_00068 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0006836 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76535MF_0006827 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0006835 .
?targetMotifMatchRegionMatchBeginMF_0006835 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0006828 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0006836 edam:has_input signature:MF_00068 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76535MF_0006825, 1, (STRLEN(?templateMotifCigarP76535MF_0006825) - STRLEN(REPLACE(?templateMotifCigarP76535MF_0006825, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP7653526) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76535MF_0006827, 1, (STRLEN(?targetMotifMatchCigarP76535MF_0006827) - STRLEN(REPLACE(?targetMotifMatchCigarP76535MF_0006827, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76535MF_0006827, 1, (STRLEN(?targetMotifMatchCigarP76535MF_0006827) - STRLEN(REPLACE(?targetMotifMatchCigarP76535MF_0006827, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0006828) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00068a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP7653545 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7653547 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76535MF_0006840 .
?templateMotifSequenceMatchRegionP7653545 faldo:begin ?templateMotifSequenceMatchBeginP7653546 .
?templateMotifSequenceMatchBeginP7653546 faldo:position ?templateMotifSequenceMatchBeginPositionP7653541 ;
faldo:reference isoform:P76535-1 .
?templateMotifSequenceProfileAlignmentOperationP7653547 edam:has_input signature:MF_00068 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0006851 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76535MF_0006842 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0006850 .
?targetMotifMatchRegionMatchBeginMF_0006850 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0006843 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0006851 edam:has_input signature:MF_00068 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76535MF_0006840, 1, (STRLEN(?templateMotifCigarP76535MF_0006840) - STRLEN(REPLACE(?templateMotifCigarP76535MF_0006840, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP7653541) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76535MF_0006842, 1, (STRLEN(?targetMotifMatchCigarP76535MF_0006842) - STRLEN(REPLACE(?targetMotifMatchCigarP76535MF_0006842, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76535MF_0006842, 1, (STRLEN(?targetMotifMatchCigarP76535MF_0006842) - STRLEN(REPLACE(?targetMotifMatchCigarP76535MF_0006842, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0006843) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00068a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1224 .
})) .
BIND(?this AS ?case12) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00068 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00068#construct |
