| http://purl.uniprot.org/unirules/MF_00072#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:28592 up:source unirule:MF_00072 .
_:28593 up:source unirule:MF_00072 .
_:28594 up:source unirule:MF_00072 .
_:28595 up:source unirule:MF_00072 .
_:28596 up:source unirule:MF_00072 .
_:28597 up:source unirule:MF_00072 .
_:28598 up:source unirule:MF_00072 .
_:28599 up:source unirule:MF_00072 .
_:28600 up:source unirule:MF_00072 .
_:28601 up:source unirule:MF_00072 .
_:28602 up:source unirule:MF_00072 .
_:28603 up:source unirule:MF_00072 .
_:28604 up:source unirule:MF_00072 .
_:28605 up:source unirule:MF_00072 .
_:28606 up:source unirule:MF_00072 .
_:28607 up:source unirule:MF_00072 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005525 ,
GO:0005737 ,
GO:0006449 ,
GO:0016149 ,
keyword:342 ,
keyword:547 ,
keyword:648 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Peptide chain release factor 3' ;
up:shortName 'RF-3' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'prfC' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
up:ligand ?ligand10 ;
rdf:type up:Binding_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?ligand10 rdfs:subClassOf chebi:37565 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:37565 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:37565 .
_:28608 a rdf:Statement ;
up:attribution _:28592 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:28609 a rdf:Statement ;
up:attribution _:28593 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:28610 a rdf:Statement ;
up:attribution _:28594 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:28611 a rdf:Statement ;
up:attribution _:28595 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:28612 a rdf:Statement ;
up:attribution _:28596 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:28613 a rdf:Statement ;
up:attribution _:28597 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:28614 a rdf:Statement ;
up:attribution _:28598 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:28615 a rdf:Statement ;
up:attribution _:28599 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:28616 a rdf:Statement ;
up:attribution _:28600 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:28617 a rdf:Statement ;
up:attribution _:28601 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:28618 a rdf:Statement ;
up:attribution _:28602 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016149 .
_:28619 a rdf:Statement ;
up:attribution _:28603 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006449 .
_:28620 a rdf:Statement ;
up:attribution _:28604 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:28621 a rdf:Statement ;
up:source unirule:MF_00072 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:28622 a rdf:Statement ;
up:attribution _:28605 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:28623 a rdf:Statement ;
up:source unirule:MF_00072 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:28624 a rdf:Statement ;
up:attribution _:28606 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:28625 a rdf:Statement ;
up:source unirule:MF_00072 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:28626 a rdf:Statement ;
up:attribution _:28607 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00072
#Rule MF_00072 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-11-28
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00072 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00072a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00072a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00072a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00072a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch31 faldo:location ?templateMotifSequenceMatchRegionP0A7I432 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7I434 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7I4MF_0007227 .
?templateMotifSequenceMatchRegionP0A7I432 faldo:begin ?templateMotifSequenceMatchBeginP0A7I433 .
?templateMotifSequenceMatchBeginP0A7I433 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7I428 ;
faldo:reference isoform:P0A7I4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7I434 edam:has_input signature:MF_00072 ;
rdf:type edam:operation_0300 .
?targetMotifMatch35 faldo:location ?targetMotifMatchRegionMatch36 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0007238 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7I4MF_0007229 .
?targetMotifMatchRegionMatch36 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0007237 .
?targetMotifMatchRegionMatchBeginMF_0007237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0007230 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0007238 edam:has_input signature:MF_00072 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7I4MF_0007227, 1, (STRLEN(?templateMotifCigarP0A7I4MF_0007227) - STRLEN(REPLACE(?templateMotifCigarP0A7I4MF_0007227, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionP0A7I428) + 1)), '}'), '')))), '[a-z]', '')) AS ?step139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007229, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007229) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007229, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007229) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), '')))), '[^-]', ''))) AS ?step240) .
BIND(((?step240 + ?targetMotifMatchRegionMatchBeginPositionMF_0007230) - 1) AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7I4MF_0007227, 1, (STRLEN(?templateMotifCigarP0A7I4MF_0007227) - STRLEN(REPLACE(?templateMotifCigarP0A7I4MF_0007227, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP0A7I428) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007229, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007229) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007229, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007229) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0007230) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)) = 'SHPDAGKT')) .
BIND(URI(CONCAT(STR(?this), '#MF_00072a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionP0A7I449 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7I451 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7I4MF_0007244 .
?templateMotifSequenceMatchRegionP0A7I449 faldo:begin ?templateMotifSequenceMatchBeginP0A7I450 .
?templateMotifSequenceMatchBeginP0A7I450 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7I445 ;
faldo:reference isoform:P0A7I4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7I451 edam:has_input signature:MF_00072 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0007255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7I4MF_0007246 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0007254 .
?targetMotifMatchRegionMatchBeginMF_0007254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0007247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0007255 edam:has_input signature:MF_00072 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7I4MF_0007244, 1, (STRLEN(?templateMotifCigarP0A7I4MF_0007244) - STRLEN(REPLACE(?templateMotifCigarP0A7I4MF_0007244, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP0A7I445) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007246, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007246) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007246, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007246) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0007247) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7I4MF_0007244, 1, (STRLEN(?templateMotifCigarP0A7I4MF_0007244) - STRLEN(REPLACE(?templateMotifCigarP0A7I4MF_0007244, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP0A7I445) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007246, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007246) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007246, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007246) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0007247) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)) = 'DTPGH')) .
BIND(URI(CONCAT(STR(?this), '#MF_00072a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP0A7I466 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7I468 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7I4MF_0007261 .
?templateMotifSequenceMatchRegionP0A7I466 faldo:begin ?templateMotifSequenceMatchBeginP0A7I467 .
?templateMotifSequenceMatchBeginP0A7I467 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7I462 ;
faldo:reference isoform:P0A7I4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7I468 edam:has_input signature:MF_00072 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0007272 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7I4MF_0007263 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0007271 .
?targetMotifMatchRegionMatchBeginMF_0007271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0007264 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0007272 edam:has_input signature:MF_00072 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7I4MF_0007261, 1, (STRLEN(?templateMotifCigarP0A7I4MF_0007261) - STRLEN(REPLACE(?templateMotifCigarP0A7I4MF_0007261, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionP0A7I462) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007263, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007263) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007263, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007263) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0007264) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7I4MF_0007261, 1, (STRLEN(?templateMotifCigarP0A7I4MF_0007261) - STRLEN(REPLACE(?templateMotifCigarP0A7I4MF_0007261, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionP0A7I462) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007263, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007263) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7I4MF_0007263, 1, (STRLEN(?targetMotifMatchCigarP0A7I4MF_0007263) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I4MF_0007263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0007264) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER (REGEX('NK[LMYCVF]D', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00072a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
}
"xsd:string |
