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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-91 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-90 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-92 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-71 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-70 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-73 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-63 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-87 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-86 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-89 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-64 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-88 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-67 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-66 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-69 |
| http://purl.uniprot.org/unirules/MF_00092#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00092#construct-template-68 |
| http://purl.uniprot.org/unirules/MF_00092#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00092#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00092#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00092#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00092#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00092#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:36024 up:source unirule:MF_00092 . _:36025 up:source unirule:MF_00092 . _:36026 up:source unirule:MF_00092 . _:36027 up:source unirule:MF_00092 . _:36028 up:source unirule:MF_00092 . _:36029 up:source unirule:MF_00092 . _:36030 up:source unirule:MF_00092 . _:36031 up:source unirule:MF_00092 . _:36032 up:source unirule:MF_00092 . _:36033 up:source unirule:MF_00092 . _:36034 up:source unirule:MF_00092 . _:36035 up:source unirule:MF_00092 . _:36036 up:source unirule:MF_00092 . _:36037 up:source unirule:MF_00092 . _:36038 up:source unirule:MF_00092 . _:36039 up:source unirule:MF_00092 . _:36040 up:source unirule:MF_00092 . _:36041 up:source unirule:MF_00092 . _:36042 up:source unirule:MF_00092 . _:36043 up:source unirule:MF_00092 . _:36044 up:source unirule:MF_00092 . _:36045 up:source unirule:MF_00092 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0003677 , GO:0004519 , GO:0005524 , GO:0019843 , GO:0043023 , GO:0072344 , keyword:238 , keyword:255 , keyword:378 , keyword:540 , keyword:547 , keyword:67 , keyword:694 , keyword:699 ; up:recommendedName ?name0 . ?name0 up:ecName '3.1.-.-' ; up:fullName 'Endonuclease MutS2' ; rdf:type up:Structured_Name . ?name1 up:ecName '3.6.4.-' ; up:fullName 'Ribosome-associated protein quality control-upstream factor' ; up:shortName 'RQC-upstream factor' , 'RqcU' ; rdf:type up:Structured_Name . ?gene2 skos:altLabel 'rqcU' ; skos:prefLabel 'mutS2' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Endonuclease that is involved in the suppression of homologous recombination and thus may have a key role in the control of bacterial genetic diversity.' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Acts as a ribosome collision sensor, splitting the ribosome into its 2 subunits. Detects stalled/collided 70S ribosomes which it binds and splits by an ATP-hydrolysis driven conformational change. Acts upstream of the ribosome quality control system (RQC), a ribosome-associated complex that mediates the extraction of incompletely synthesized nascent chains from stalled ribosomes and their subsequent degradation. Probably generates substrates for RQC.' . ?annotation5 a up:Subunit_Annotation ; rdfs:comment 'Homodimer. Binds to stalled ribosomes, contacting rRNA.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.' . ?pfs7 up:annotation ?annotation8 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; up:ligand ?ligand11 ; rdf:type up:Binding_Site_Annotation . ?pfsb9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?ligand11 rdfs:subClassOf chebi:30616 . _:36046 a rdf:Statement ; up:attribution _:36024 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:36047 a rdf:Statement ; up:attribution _:36025 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:36048 a rdf:Statement ; up:attribution _:36026 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:36049 a rdf:Statement ; up:attribution _:36027 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:36050 a rdf:Statement ; up:attribution _:36028 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:36051 a rdf:Statement ; up:attribution _:36029 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:36052 a rdf:Statement ; up:attribution _:36030 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:36053 a rdf:Statement ; up:attribution _:36031 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:36054 a rdf:Statement ; up:attribution _:36032 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:36055 a rdf:Statement ; up:attribution _:36033 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:255 . _:36056 a rdf:Statement ; up:attribution _:36034 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:36057 a rdf:Statement ; up:attribution _:36035 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:36058 a rdf:Statement ; up:attribution _:36036 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:36059 a rdf:Statement ; up:attribution _:36037 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:36060 a rdf:Statement ; up:attribution _:36038 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:699 . _:36061 a rdf:Statement ; up:attribution _:36039 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:36062 a rdf:Statement ; up:attribution _:36040 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003677 . _:36063 a rdf:Statement ; up:attribution _:36041 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004519 . _:36064 a rdf:Statement ; up:attribution _:36042 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0072344 . _:36065 a rdf:Statement ; up:attribution _:36043 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019843 . _:36066 a rdf:Statement ; up:attribution _:36044 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0043023 . _:36067 a rdf:Statement ; up:source unirule:MF_00092 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:36068 a rdf:Statement ; up:attribution _:36045 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00092 #Rule MF_00092 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2024-09-02 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00092 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00092a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00092a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00092a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00092a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00092a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00092a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionQ5SHT519 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SHT521 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SHT5MF_0009214 . ?templateMotifSequenceMatchRegionQ5SHT519 faldo:begin ?templateMotifSequenceMatchBeginQ5SHT520 . ?templateMotifSequenceMatchBeginQ5SHT520 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SHT515 ; faldo:reference isoform:Q5SHT5-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SHT521 edam:has_input signature:MF_00092 ; rdf:type edam:operation_0300 . ?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0009225 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SHT5MF_0009216 . ?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0009224 . ?targetMotifMatchRegionMatchBeginMF_0009224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0009217 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0009225 edam:has_input signature:MF_00092 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SHT5MF_0009214, 1, (STRLEN(?templateMotifCigarQ5SHT5MF_0009214) - STRLEN(REPLACE(?templateMotifCigarQ5SHT5MF_0009214, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionQ5SHT515) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SHT5MF_0009216, 1, (STRLEN(?targetMotifMatchCigarQ5SHT5MF_0009216) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SHT5MF_0009216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SHT5MF_0009216, 1, (STRLEN(?targetMotifMatchCigarQ5SHT5MF_0009216) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SHT5MF_0009216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) . BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0009217) - 1) AS ?thisPositionOn12) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SHT5MF_0009214, 1, (STRLEN(?templateMotifCigarQ5SHT5MF_0009214) - STRLEN(REPLACE(?templateMotifCigarQ5SHT5MF_0009214, CONCAT('^(?:-*[^-]){', STR(((322 - ?templateMotifSequenceMatchBeginPositionQ5SHT515) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SHT5MF_0009216, 1, (STRLEN(?targetMotifMatchCigarQ5SHT5MF_0009216) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SHT5MF_0009216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SHT5MF_0009216, 1, (STRLEN(?targetMotifMatchCigarQ5SHT5MF_0009216) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SHT5MF_0009216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) . BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0009217) - 1) AS ?thisPositionOn13) . BIND(?this AS ?pfs1t30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]N[ARNDCQEGHILKMFPSTWYVBZJUOX]GGK[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) . BIND(URI(CONCAT(STR(?this), '#MF_00092a8')) AS ?annotation8) . BIND(?this AS ?pfs7) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_00092 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00092#construct |