| http://purl.uniprot.org/unirules/MF_00117#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:46713 up:source unirule:MF_00117 .
_:46714 up:source unirule:MF_00117 .
_:46715 up:source unirule:MF_00117 .
_:46716 up:source unirule:MF_00117 .
_:46717 up:source unirule:MF_00117 .
_:46718 up:source unirule:MF_00117 .
_:46719 up:source unirule:MF_00117 .
_:46720 up:source unirule:MF_00117 .
_:46721 up:source unirule:MF_00117 .
_:46722 up:source unirule:MF_00117 .
_:46723 up:source unirule:MF_00117 .
_:46724 up:source unirule:MF_00117 .
_:46725 up:source unirule:MF_00117 .
_:46726 up:source unirule:MF_00117 .
_:46727 up:source unirule:MF_00117 .
_:46728 up:source unirule:MF_00117 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0005737 ,
GO:0051082 ,
keyword:1015 ,
keyword:143 ,
keyword:676 ,
keyword:862 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName '33 kDa chaperonin' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Heat shock protein 33 homolog' ;
up:shortName 'HSP33' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'hslO' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:PTM_Annotation ;
rdfs:comment 'Under oxidizing conditions two disulfide bonds are formed involving the reactive cysteines. Under reducing conditions zinc is bound to the reactive cysteines and the protein is inactive.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the HSP33 family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Redox-active' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Redox-active' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
_:46729 a rdf:Statement ;
up:attribution _:46713 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:46730 a rdf:Statement ;
up:attribution _:46714 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:46731 a rdf:Statement ;
up:attribution _:46715 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:46732 a rdf:Statement ;
up:attribution _:46716 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:46733 a rdf:Statement ;
up:attribution _:46717 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:46734 a rdf:Statement ;
up:attribution _:46718 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:46735 a rdf:Statement ;
up:attribution _:46719 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:46736 a rdf:Statement ;
up:attribution _:46720 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:46737 a rdf:Statement ;
up:attribution _:46721 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:143 .
_:46738 a rdf:Statement ;
up:attribution _:46722 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:46739 a rdf:Statement ;
up:attribution _:46723 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:676 .
_:46740 a rdf:Statement ;
up:attribution _:46724 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:46741 a rdf:Statement ;
up:attribution _:46725 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051082 .
_:46742 a rdf:Statement ;
up:attribution _:46726 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:46743 a rdf:Statement ;
up:source unirule:MF_00117 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:46744 a rdf:Statement ;
up:attribution _:46727 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:46745 a rdf:Statement ;
up:source unirule:MF_00117 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:46746 a rdf:Statement ;
up:attribution _:46728 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00117
#Rule MF_00117 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00117 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00117a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00117a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00117a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00117a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00117a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00117a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP0A6Y525 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6Y527 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6Y5MF_0011720 .
?templateMotifSequenceMatchRegionP0A6Y525 faldo:begin ?templateMotifSequenceMatchBeginP0A6Y526 .
?templateMotifSequenceMatchBeginP0A6Y526 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6Y521 ;
faldo:reference isoform:P0A6Y5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6Y527 edam:has_input signature:MF_00117 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0011731 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6Y5MF_0011722 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0011730 .
?targetMotifMatchRegionMatchBeginMF_0011730 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0011723 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0011731 edam:has_input signature:MF_00117 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6Y5MF_0011720, 1, (STRLEN(?templateMotifCigarP0A6Y5MF_0011720) - STRLEN(REPLACE(?templateMotifCigarP0A6Y5MF_0011720, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionP0A6Y521) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6Y5MF_0011722, 1, (STRLEN(?targetMotifMatchCigarP0A6Y5MF_0011722) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6Y5MF_0011722, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6Y5MF_0011722, 1, (STRLEN(?targetMotifMatchCigarP0A6Y5MF_0011722) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6Y5MF_0011722, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0011723) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6Y5MF_0011720, 1, (STRLEN(?templateMotifCigarP0A6Y5MF_0011720) - STRLEN(REPLACE(?templateMotifCigarP0A6Y5MF_0011720, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP0A6Y521) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6Y5MF_0011722, 1, (STRLEN(?targetMotifMatchCigarP0A6Y5MF_0011722) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6Y5MF_0011722, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6Y5MF_0011722, 1, (STRLEN(?targetMotifMatchCigarP0A6Y5MF_0011722) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6Y5MF_0011722, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0011723) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]C', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00117a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionP0A6Y542 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6Y544 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6Y5MF_0011737 .
?templateMotifSequenceMatchRegionP0A6Y542 faldo:begin ?templateMotifSequenceMatchBeginP0A6Y543 .
?templateMotifSequenceMatchBeginP0A6Y543 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6Y538 ;
faldo:reference isoform:P0A6Y5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6Y544 edam:has_input signature:MF_00117 ;
rdf:type edam:operation_0300 .
?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0011748 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6Y5MF_0011739 .
?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0011747 .
?targetMotifMatchRegionMatchBeginMF_0011747 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0011740 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0011748 edam:has_input signature:MF_00117 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6Y5MF_0011737, 1, (STRLEN(?templateMotifCigarP0A6Y5MF_0011737) - STRLEN(REPLACE(?templateMotifCigarP0A6Y5MF_0011737, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionP0A6Y538) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6Y5MF_0011739, 1, (STRLEN(?targetMotifMatchCigarP0A6Y5MF_0011739) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6Y5MF_0011739, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6Y5MF_0011739, 1, (STRLEN(?targetMotifMatchCigarP0A6Y5MF_0011739) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6Y5MF_0011739, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0011740) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6Y5MF_0011737, 1, (STRLEN(?templateMotifCigarP0A6Y5MF_0011737) - STRLEN(REPLACE(?templateMotifCigarP0A6Y5MF_0011737, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionP0A6Y538) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6Y5MF_0011739, 1, (STRLEN(?targetMotifMatchCigarP0A6Y5MF_0011739) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6Y5MF_0011739, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6Y5MF_0011739, 1, (STRLEN(?targetMotifMatchCigarP0A6Y5MF_0011739) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6Y5MF_0011739, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0011740) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)C', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00117a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
}
"xsd:string |
