| http://purl.uniprot.org/unirules/MF_00120#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:48369 up:source unirule:MF_00120 .
_:48370 up:source unirule:MF_00120 .
_:48371 up:source unirule:MF_00120 .
_:48372 up:source unirule:MF_00120 .
_:48373 up:source unirule:MF_00120 .
_:48374 up:source unirule:MF_00120 .
_:48375 up:source unirule:MF_00120 .
_:48376 up:source unirule:MF_00120 .
_:48377 up:source unirule:MF_00120 .
_:48378 up:source unirule:MF_00120 .
_:48379 up:source unirule:MF_00120 .
_:48380 up:source unirule:MF_00120 .
_:48381 up:source unirule:MF_00120 .
_:48382 up:source unirule:MF_00120 .
_:48383 up:source unirule:MF_00120 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0006412 ,
GO:0050567 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.5.7' ;
up:fullName 'Glutamyl-tRNA(Gln) amidotransferase subunit A' ;
up:shortName 'Glu-ADT subunit A' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gatA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Heterotrimer of A, B and C subunits.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the amidase family. GatA subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Acyl-ester intermediate' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:48384 a rdf:Statement ;
up:attribution _:48369 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:48385 a rdf:Statement ;
up:attribution _:48370 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:48386 a rdf:Statement ;
up:attribution _:48371 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:48387 a rdf:Statement ;
up:attribution _:48372 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:48388 a rdf:Statement ;
up:attribution _:48373 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:48389 a rdf:Statement ;
up:attribution _:48374 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:48390 a rdf:Statement ;
up:attribution _:48375 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:48391 a rdf:Statement ;
up:attribution _:48376 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:48392 a rdf:Statement ;
up:attribution _:48377 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:48393 a rdf:Statement ;
up:attribution _:48378 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:48394 a rdf:Statement ;
up:attribution _:48379 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050567 .
_:48395 a rdf:Statement ;
up:attribution _:48380 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006412 .
_:48396 a rdf:Statement ;
up:source unirule:MF_00120 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:48397 a rdf:Statement ;
up:attribution _:48381 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:48398 a rdf:Statement ;
up:source unirule:MF_00120 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:48399 a rdf:Statement ;
up:attribution _:48382 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:48400 a rdf:Statement ;
up:source unirule:MF_00120 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:48401 a rdf:Statement ;
up:attribution _:48383 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00120
#Rule MF_00120 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00120 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00120 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_00120a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00120a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00120a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00120a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00120a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionO0649130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0649132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06491MF_0012025 .
?templateMotifSequenceMatchRegionO0649130 faldo:begin ?templateMotifSequenceMatchBeginO0649131 .
?templateMotifSequenceMatchBeginO0649131 faldo:position ?templateMotifSequenceMatchBeginPositionO0649126 ;
faldo:reference isoform:O06491-1 .
?templateMotifSequenceProfileAlignmentOperationO0649132 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012036 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06491MF_0012027 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012035 .
?targetMotifMatchRegionMatchBeginMF_0012035 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012028 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012036 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06491MF_0012025, 1, (STRLEN(?templateMotifCigarO06491MF_0012025) - STRLEN(REPLACE(?templateMotifCigarO06491MF_0012025, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionO0649126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06491MF_0012027, 1, (STRLEN(?targetMotifMatchCigarO06491MF_0012027) - STRLEN(REPLACE(?targetMotifMatchCigarO06491MF_0012027, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06491MF_0012027, 1, (STRLEN(?targetMotifMatchCigarO06491MF_0012027) - STRLEN(REPLACE(?targetMotifMatchCigarO06491MF_0012027, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0012028) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00120a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionO0649145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0649147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06491MF_0012040 .
?templateMotifSequenceMatchRegionO0649145 faldo:begin ?templateMotifSequenceMatchBeginO0649146 .
?templateMotifSequenceMatchBeginO0649146 faldo:position ?templateMotifSequenceMatchBeginPositionO0649141 ;
faldo:reference isoform:O06491-1 .
?templateMotifSequenceProfileAlignmentOperationO0649147 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012051 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06491MF_0012042 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012050 .
?targetMotifMatchRegionMatchBeginMF_0012050 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012043 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012051 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06491MF_0012040, 1, (STRLEN(?templateMotifCigarO06491MF_0012040) - STRLEN(REPLACE(?templateMotifCigarO06491MF_0012040, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionO0649141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06491MF_0012042, 1, (STRLEN(?targetMotifMatchCigarO06491MF_0012042) - STRLEN(REPLACE(?targetMotifMatchCigarO06491MF_0012042, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06491MF_0012042, 1, (STRLEN(?targetMotifMatchCigarO06491MF_0012042) - STRLEN(REPLACE(?targetMotifMatchCigarO06491MF_0012042, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0012043) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00120a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionO0649160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0649162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06491MF_0012055 .
?templateMotifSequenceMatchRegionO0649160 faldo:begin ?templateMotifSequenceMatchBeginO0649161 .
?templateMotifSequenceMatchBeginO0649161 faldo:position ?templateMotifSequenceMatchBeginPositionO0649156 ;
faldo:reference isoform:O06491-1 .
?templateMotifSequenceProfileAlignmentOperationO0649162 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012066 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06491MF_0012057 .
?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012065 .
?targetMotifMatchRegionMatchBeginMF_0012065 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012058 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012066 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06491MF_0012055, 1, (STRLEN(?templateMotifCigarO06491MF_0012055) - STRLEN(REPLACE(?templateMotifCigarO06491MF_0012055, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionO0649156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06491MF_0012057, 1, (STRLEN(?targetMotifMatchCigarO06491MF_0012057) - STRLEN(REPLACE(?targetMotifMatchCigarO06491MF_0012057, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06491MF_0012057, 1, (STRLEN(?targetMotifMatchCigarO06491MF_0012057) - STRLEN(REPLACE(?targetMotifMatchCigarO06491MF_0012057, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0012058) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00120a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
