| http://purl.uniprot.org/unirules/MF_00131#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:52165 up:source unirule:MF_00131 .
_:52166 up:source unirule:MF_00131 .
_:52167 up:source unirule:MF_00131 .
_:52168 up:source unirule:MF_00131 .
_:52169 up:source unirule:MF_00131 .
_:52170 up:source unirule:MF_00131 .
_:52171 up:source unirule:MF_00131 .
_:52172 up:source unirule:MF_00131 .
_:52173 up:source unirule:MF_00131 .
_:52174 up:source unirule:MF_00131 .
_:52175 up:source unirule:MF_00131 .
_:52176 up:source unirule:MF_00131 .
_:52177 up:source unirule:MF_00131 .
_:52178 up:source unirule:MF_00131 .
_:52179 up:source unirule:MF_00131 .
_:52180 up:source unirule:MF_00131 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0000162 ,
GO:0004834 ,
keyword:28 ,
keyword:456 ,
keyword:57 ,
keyword:822 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.20' ;
up:fullName 'Tryptophan synthase alpha chain' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'trpA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Tetramer of two alpha and two beta chains.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TrpA family.' .
?case8 up:classifiedWith GO:0009507 .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
_:52181 a rdf:Statement ;
up:attribution _:52165 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:52182 a rdf:Statement ;
up:attribution _:52166 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:52183 a rdf:Statement ;
up:attribution _:52167 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:52184 a rdf:Statement ;
up:attribution _:52168 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:52185 a rdf:Statement ;
up:attribution _:52169 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:52186 a rdf:Statement ;
up:attribution _:52170 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:52187 a rdf:Statement ;
up:attribution _:52171 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:52188 a rdf:Statement ;
up:attribution _:52172 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:52189 a rdf:Statement ;
up:attribution _:52173 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:57 .
_:52190 a rdf:Statement ;
up:attribution _:52174 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:822 .
_:52191 a rdf:Statement ;
up:attribution _:52175 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:52192 a rdf:Statement ;
up:attribution _:52176 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004834 .
_:52193 a rdf:Statement ;
up:attribution _:52177 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000162 .
_:52194 a rdf:Statement ;
up:attribution _:52178 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:52195 a rdf:Statement ;
up:source unirule:MF_00131 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:52196 a rdf:Statement ;
up:attribution _:52179 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:52197 a rdf:Statement ;
up:source unirule:MF_00131 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:52198 a rdf:Statement ;
up:attribution _:52180 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00131
#Rule MF_00131 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-01-13
{
VALUES ?supertaxon21 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00131 .
?thisOrganism rdfs:subClassOf+ ?supertaxon21 .
} UNION {
?this rdfs:seeAlso signature:MF_00131 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_00131a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00131a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00131a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00131a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00131a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00131a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch26 faldo:location ?templateMotifSequenceMatchRegionP0A87727 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A87729 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A877MF_0013122 .
?templateMotifSequenceMatchRegionP0A87727 faldo:begin ?templateMotifSequenceMatchBeginP0A87728 .
?templateMotifSequenceMatchBeginP0A87728 faldo:position ?templateMotifSequenceMatchBeginPositionP0A87723 ;
faldo:reference isoform:P0A877-1 .
?templateMotifSequenceProfileAlignmentOperationP0A87729 edam:has_input signature:MF_00131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch30 faldo:location ?targetMotifMatchRegionMatch31 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0013133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A877MF_0013124 .
?targetMotifMatchRegionMatch31 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0013132 .
?targetMotifMatchRegionMatchBeginMF_0013132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0013125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0013133 edam:has_input signature:MF_00131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A877MF_0013122, 1, (STRLEN(?templateMotifCigarP0A877MF_0013122) - STRLEN(REPLACE(?templateMotifCigarP0A877MF_0013122, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP0A87723) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A877MF_0013124, 1, (STRLEN(?targetMotifMatchCigarP0A877MF_0013124) - STRLEN(REPLACE(?targetMotifMatchCigarP0A877MF_0013124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A877MF_0013124, 1, (STRLEN(?targetMotifMatchCigarP0A877MF_0013124) - STRLEN(REPLACE(?targetMotifMatchCigarP0A877MF_0013124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0013125) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00131a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionP0A87742 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A87744 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A877MF_0013137 .
?templateMotifSequenceMatchRegionP0A87742 faldo:begin ?templateMotifSequenceMatchBeginP0A87743 .
?templateMotifSequenceMatchBeginP0A87743 faldo:position ?templateMotifSequenceMatchBeginPositionP0A87738 ;
faldo:reference isoform:P0A877-1 .
?templateMotifSequenceProfileAlignmentOperationP0A87744 edam:has_input signature:MF_00131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0013148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A877MF_0013139 .
?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0013147 .
?targetMotifMatchRegionMatchBeginMF_0013147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0013140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0013148 edam:has_input signature:MF_00131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A877MF_0013137, 1, (STRLEN(?templateMotifCigarP0A877MF_0013137) - STRLEN(REPLACE(?templateMotifCigarP0A877MF_0013137, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionP0A87738) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A877MF_0013139, 1, (STRLEN(?targetMotifMatchCigarP0A877MF_0013139) - STRLEN(REPLACE(?targetMotifMatchCigarP0A877MF_0013139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A877MF_0013139, 1, (STRLEN(?targetMotifMatchCigarP0A877MF_0013139) - STRLEN(REPLACE(?targetMotifMatchCigarP0A877MF_0013139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0013140) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00131a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case8) .
}
}
"xsd:string |
