| http://purl.uniprot.org/unirules/MF_00133#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:52900 up:source unirule:MF_00133 .
_:52901 up:source unirule:MF_00133 .
_:52902 up:source unirule:MF_00133 .
_:52903 up:source unirule:MF_00133 .
_:52904 up:source unirule:MF_00133 .
_:52905 up:source unirule:MF_00133 .
_:52906 up:source unirule:MF_00133 .
_:52907 up:source unirule:MF_00133 .
_:52908 up:source unirule:MF_00133 .
_:52909 up:source unirule:MF_00133 .
_:52910 up:source unirule:MF_00133 .
_:52911 up:source unirule:MF_00133 .
_:52912 up:source unirule:MF_00133 .
_:52913 up:source unirule:MF_00133 .
_:52914 up:source unirule:MF_00133 .
_:52915 up:source unirule:MF_00133 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000162 ,
GO:0004834 ,
keyword:28 ,
keyword:456 ,
keyword:57 ,
keyword:663 ,
keyword:822 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.20' ;
up:fullName 'Tryptophan synthase beta chain' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'trpB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Tetramer of two alpha and two beta chains.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TrpB family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
_:52916 a rdf:Statement ;
up:attribution _:52900 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:52917 a rdf:Statement ;
up:attribution _:52901 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:52918 a rdf:Statement ;
up:attribution _:52902 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:52919 a rdf:Statement ;
up:attribution _:52903 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:52920 a rdf:Statement ;
up:attribution _:52904 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:52921 a rdf:Statement ;
up:attribution _:52905 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:52922 a rdf:Statement ;
up:attribution _:52906 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:52923 a rdf:Statement ;
up:attribution _:52907 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:52924 a rdf:Statement ;
up:attribution _:52908 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:52925 a rdf:Statement ;
up:attribution _:52909 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:57 .
_:52926 a rdf:Statement ;
up:attribution _:52910 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:822 .
_:52927 a rdf:Statement ;
up:attribution _:52911 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:52928 a rdf:Statement ;
up:attribution _:52912 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:52929 a rdf:Statement ;
up:attribution _:52913 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004834 .
_:52930 a rdf:Statement ;
up:attribution _:52914 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000162 .
_:52931 a rdf:Statement ;
up:source unirule:MF_00133 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:52932 a rdf:Statement ;
up:attribution _:52915 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00133
#Rule MF_00133 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-01-13
VALUES ?supertaxon15 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00133 .
?thisOrganism rdfs:subClassOf+ ?supertaxon15 .
BIND(URI(CONCAT(STR(?this), '#MF_00133a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00133a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00133a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00133a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00133a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00133a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00133a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch20 faldo:location ?templateMotifSequenceMatchRegionP0A87921 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A87923 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A879MF_0013316 .
?templateMotifSequenceMatchRegionP0A87921 faldo:begin ?templateMotifSequenceMatchBeginP0A87922 .
?templateMotifSequenceMatchBeginP0A87922 faldo:position ?templateMotifSequenceMatchBeginPositionP0A87917 ;
faldo:reference isoform:P0A879-1 .
?templateMotifSequenceProfileAlignmentOperationP0A87923 edam:has_input signature:MF_00133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch24 faldo:location ?targetMotifMatchRegionMatch25 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0013327 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A879MF_0013318 .
?targetMotifMatchRegionMatch25 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0013326 .
?targetMotifMatchRegionMatchBeginMF_0013326 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0013319 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0013327 edam:has_input signature:MF_00133 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A879MF_0013316, 1, (STRLEN(?templateMotifCigarP0A879MF_0013316) - STRLEN(REPLACE(?templateMotifCigarP0A879MF_0013316, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP0A87917) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A879MF_0013318, 1, (STRLEN(?targetMotifMatchCigarP0A879MF_0013318) - STRLEN(REPLACE(?targetMotifMatchCigarP0A879MF_0013318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A879MF_0013318, 1, (STRLEN(?targetMotifMatchCigarP0A879MF_0013318) - STRLEN(REPLACE(?targetMotifMatchCigarP0A879MF_0013318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) .
BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0013319) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00133a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
}
"xsd:string |
