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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-74 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-6 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-79 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-13 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-83 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-19 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-17 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-78 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_00163#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00163#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_00163#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00163#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00163#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00163#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00163#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00163#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:65150 up:source unirule:MF_00163 . _:65151 up:source unirule:MF_00163 . _:65152 up:source unirule:MF_00163 . _:65153 up:source unirule:MF_00163 . _:65154 up:source unirule:MF_00163 . _:65155 up:source unirule:MF_00163 . _:65156 up:source unirule:MF_00163 . _:65157 up:source unirule:MF_00163 . _:65158 up:source unirule:MF_00163 . _:65159 up:source unirule:MF_00163 . _:65160 up:source unirule:MF_00163 . _:65161 up:source unirule:MF_00163 . _:65162 up:source unirule:MF_00163 . ?this up:annotation ?annotation0 . ?annotation0 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the polypeptide deformylase family.' . ?case1 up:classifiedWith keyword:408 , keyword:479 . ?case2 up:alternativeName ?name4 ; up:classifiedWith GO:0006412 , GO:0042586 , keyword:378 , keyword:648 ; up:recommendedName ?name3 . ?name3 up:ecName '3.5.1.88' ; up:fullName 'Peptide deformylase' ; up:shortName 'PDF' ; rdf:type up:Structured_Name . ?name4 up:fullName 'Polypeptide deformylase' ; rdf:type up:Structured_Name . ?pfs6 up:annotation ?annotation7 , ?annotation13 , ?annotation19 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; up:ligand ?ligand10 ; rdf:type up:Binding_Site_Annotation . ?pfsb8 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?ligand10 rdfs:subClassOf chebi:24875 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; up:ligand ?ligand16 ; rdf:type up:Binding_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand16 rdfs:subClassOf chebi:24875 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:24875 . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; rdf:type up:Active_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . _:65163 a rdf:Statement ; up:attribution _:65150 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:65164 a rdf:Statement ; up:attribution _:65151 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:65165 a rdf:Statement ; up:attribution _:65152 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:65166 a rdf:Statement ; up:attribution _:65153 ; rdf:subject ?case2 ; rdf:predicate up:recommendedName ; rdf:object ?name3 . _:65167 a rdf:Statement ; up:attribution _:65154 ; rdf:subject ?case2 ; rdf:predicate up:alternativeName ; rdf:object ?name4 . _:65168 a rdf:Statement ; up:attribution _:65155 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object keyword:648 . _:65169 a rdf:Statement ; up:attribution _:65156 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:65170 a rdf:Statement ; up:attribution _:65157 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042586 . _:65171 a rdf:Statement ; up:attribution _:65158 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object GO:0006412 . _:65172 a rdf:Statement ; up:source unirule:MF_00163 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:65173 a rdf:Statement ; up:attribution _:65159 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:65174 a rdf:Statement ; up:source unirule:MF_00163 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:65175 a rdf:Statement ; up:attribution _:65160 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:65176 a rdf:Statement ; up:source unirule:MF_00163 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:65177 a rdf:Statement ; up:attribution _:65161 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:65178 a rdf:Statement ; up:source unirule:MF_00163 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:65179 a rdf:Statement ; up:attribution _:65162 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00163 #Rule MF_00163 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-01-31 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00163 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00163a0')) AS ?annotation0) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionP0A6K336 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6K338 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6K3MF_0016331 . ?templateMotifSequenceMatchRegionP0A6K336 faldo:begin ?templateMotifSequenceMatchBeginP0A6K337 . ?templateMotifSequenceMatchBeginP0A6K337 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6K332 ; faldo:reference isoform:P0A6K3-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6K338 edam:has_input signature:MF_00163 ; rdf:type edam:operation_0300 . ?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0016342 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6K3MF_0016333 . ?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0016341 . ?targetMotifMatchRegionMatchBeginMF_0016341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0016334 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0016342 edam:has_input signature:MF_00163 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6K3MF_0016331, 1, (STRLEN(?templateMotifCigarP0A6K3MF_0016331) - STRLEN(REPLACE(?templateMotifCigarP0A6K3MF_0016331, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP0A6K332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6K3MF_0016333, 1, (STRLEN(?targetMotifMatchCigarP0A6K3MF_0016333) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6K3MF_0016333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6K3MF_0016333, 1, (STRLEN(?targetMotifMatchCigarP0A6K3MF_0016333) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6K3MF_0016333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) . BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0016334) - 1) AS ?thisPositionOn11) . BIND(?thisPositionOn11 AS ?thisPositionOn12) . BIND(?this AS ?pfs1t45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6K3MF_0016331, 1, (STRLEN(?templateMotifCigarP0A6K3MF_0016331) - STRLEN(REPLACE(?templateMotifCigarP0A6K3MF_0016331, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP0A6K332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6K3MF_0016333, 1, (STRLEN(?targetMotifMatchCigarP0A6K3MF_0016333) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6K3MF_0016333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6K3MF_0016333, 1, (STRLEN(?targetMotifMatchCigarP0A6K3MF_0016333) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6K3MF_0016333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) . BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0016334) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6K3MF_0016331, 1, (STRLEN(?templateMotifCigarP0A6K3MF_0016331) - STRLEN(REPLACE(?templateMotifCigarP0A6K3MF_0016331, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP0A6K332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6K3MF_0016333, 1, (STRLEN(?targetMotifMatchCigarP0A6K3MF_0016333) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6K3MF_0016333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6K3MF_0016333, 1, (STRLEN(?targetMotifMatchCigarP0A6K3MF_0016333) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6K3MF_0016333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0016334) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'H')) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionP0A6K357 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6K359 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6K3MF_0016352 . ?templateMotifSequenceMatchRegionP0A6K357 faldo:begin ?templateMotifSequenceMatchBeginP0A6K358 . ?templateMotifSequenceMatchBeginP0A6K358 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6K353 ; faldo:reference isoform:P0A6K3-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6K359 edam:has_input signature:MF_00163 ; rdf:type edam:operation_0300 . ?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0016363 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6K3MF_0016354 . ?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0016362 . ?targetMotifMatchRegionMatchBeginMF_0016362 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0016355 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0016363 edam:has_input signature:MF_00163 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagact_site) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6K3MF_0016352, 1, (STRLEN(?templateMotifCigarP0A6K3MF_0016352) - STRLEN(REPLACE(?templateMotifCigarP0A6K3MF_0016352, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP0A6K353) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6K3MF_0016354, 1, (STRLEN(?targetMotifMatchCigarP0A6K3MF_0016354) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6K3MF_0016354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6K3MF_0016354, 1, (STRLEN(?targetMotifMatchCigarP0A6K3MF_0016354) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6K3MF_0016354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) . BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0016355) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs2t66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00163a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag67) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag67, ?UNBOUND_VARIABLE) AS ?case1) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag68) . BIND(URI(CONCAT(STR(?this), '#MF_00163a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_00163a4')) AS ?name4) . } BIND(IF((BOUND(?tagact_site) || BOUND(?tagFTGRP_1)), ?caseWithTag68, ?UNBOUND_VARIABLE) AS ?case2) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag69) . } BIND(IF((BOUND(?tagact_site) || BOUND(?tagFTGRP_1)), ?caseWithTag69, ?UNBOUND_VARIABLE) AS ?case5) . } "xsd:string |
| http://purl.uniprot.org/unirules/MF_00163 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00163#construct |